Wall clock time and date at job start Mon Mar 30 2020 02:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00187 * 2 1 4 4 H 1.48504 * 109.46678 * 90.00209 * 3 2 1 5 5 H 1.48505 * 109.47215 * 330.00467 * 3 2 1 6 6 H 1.48493 * 109.47193 * 210.00310 * 3 2 1 7 7 C 1.38815 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99499 * 20.95702 * 7 2 1 9 9 N 1.36925 * 120.00078 * 200.95990 * 7 2 1 10 10 C 1.50244 * 130.84127 * 9.92916 * 9 7 2 11 11 H 1.09005 * 115.85586 * 0.39310 * 10 9 7 12 12 C 1.55844 * 101.05076 * 234.00763 * 10 9 7 13 13 C 1.54222 * 103.56414 * 327.14387 * 12 10 9 14 14 C 1.50240 * 130.83819 * 190.27108 * 9 7 2 15 15 H 1.08999 * 115.86022 * 359.59890 * 14 9 7 16 16 C 1.55850 * 101.04791 * 233.93104 * 14 9 7 17 17 H 1.08998 * 110.62686 * 85.71172 * 16 14 9 18 18 N 1.46500 * 110.62323 * 208.57199 * 16 14 9 19 19 C 1.34777 * 119.99992 * 274.63113 * 18 16 14 20 20 O 1.21696 * 119.99885 * 0.02562 * 19 18 16 21 21 C 1.46677 * 120.00093 * 180.02562 * 19 18 16 22 22 C 1.37871 * 126.23732 * 180.02562 * 21 19 18 23 23 C 1.39831 * 107.09240 * 179.97438 * 22 21 19 24 24 C 1.35461 * 107.85909 * 359.97438 * 23 22 21 25 25 N 1.35530 * 108.87260 * 359.73683 * 24 23 22 26 26 H 0.97001 * 125.67499 * 180.30554 * 25 24 23 27 27 C 1.54849 * 103.44516 * 327.05866 * 16 14 9 28 28 H 0.96998 * 119.99878 * 174.93669 * 1 2 3 29 29 H 1.08993 * 110.62755 * 85.55189 * 12 10 9 30 30 H 1.09006 * 110.62362 * 208.41215 * 12 10 9 31 31 H 1.08997 * 110.64635 * 241.43977 * 13 12 10 32 32 H 1.09001 * 110.49535 * 118.49925 * 13 12 10 33 33 H 0.97008 * 120.00117 * 94.63806 * 18 16 14 34 34 H 1.08003 * 126.45313 * 359.96373 * 22 21 19 35 35 H 1.07998 * 126.07335 * 179.97438 * 23 22 21 36 36 H 1.08005 * 125.55992 * 179.97438 * 24 23 22 37 37 H 1.09001 * 110.62756 * 118.49304 * 27 16 14 38 38 H 1.09004 * 110.62978 * 241.51215 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4002 5 1 1.4477 2.6527 -0.7000 6 1 3.5477 1.4401 -0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.5238 -2.1064 -0.3355 9 7 3.3116 -1.2416 0.4236 10 6 4.1526 -0.2041 1.1117 11 1 3.6591 0.7448 1.3221 12 6 5.3856 -0.1403 0.1608 13 6 5.5129 -1.5849 -0.3640 14 6 4.3401 -2.3335 0.3382 15 1 4.0118 -3.2601 -0.1326 16 6 4.7724 -2.4540 1.8307 17 1 4.1039 -3.1242 2.3711 18 7 6.1581 -2.9188 1.9306 19 6 6.4300 -4.2385 1.9010 20 8 5.5245 -5.0440 1.7908 21 6 7.8174 -4.7039 2.0016 22 6 8.2401 -6.0161 1.9848 23 6 9.6331 -6.0007 2.1048 24 6 10.0285 -4.7079 2.1904 25 7 8.9352 -3.9097 2.1227 26 1 8.9395 -2.9403 2.1563 27 6 4.6435 -1.0049 2.3610 28 1 -0.4850 -0.8368 -0.0741 29 1 5.2004 0.5499 -0.6623 30 1 6.2802 0.1515 0.7110 31 1 6.4713 -2.0158 -0.0747 32 1 5.3907 -1.6098 -1.4468 33 1 6.8799 -2.2767 2.0182 34 1 7.6132 -6.8911 1.8958 35 1 10.2792 -6.8659 2.1256 36 1 11.0488 -4.3685 2.2918 37 1 3.9094 -0.9542 3.1652 38 1 5.6106 -0.6320 2.6985 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095169501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:30 Heat of formation + Delta-G solvation = 68.237856 kcal Electronic energy + Delta-G solvation = -21622.190715 eV Core-core repulsion = 18467.135619 eV Total energy + Delta-G solvation = -3155.055097 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39517 -40.05196 -38.25586 -34.21740 -32.54368 -31.22447 -29.99678 -29.57143 -29.15553 -27.93283 -23.90812 -22.81451 -21.63550 -20.68917 -20.26320 -20.09833 -19.03366 -18.73138 -17.36647 -16.21764 -15.83146 -15.40551 -15.25964 -14.56347 -14.09520 -13.72787 -13.68064 -13.45685 -13.18316 -12.87381 -12.53485 -12.39285 -12.02711 -11.83423 -11.52971 -11.35821 -11.21718 -10.78044 -10.37990 -10.10922 -9.90731 -9.69266 -9.48435 -9.19861 -9.18730 -8.94886 -8.58081 -8.34188 -7.23344 -6.31545 -3.19162 1.40531 2.60833 2.91119 3.23481 3.31298 3.45022 3.46471 3.63172 4.56505 4.66456 4.83337 4.84802 5.13251 5.18389 5.18845 5.31911 5.38876 5.56646 5.64130 5.72293 5.76923 5.87795 5.90924 5.92208 6.01961 6.18282 6.24601 6.34374 6.38516 6.52050 6.57778 6.67152 6.74752 6.85244 6.87611 7.16326 7.39658 7.61533 8.27314 8.30503 8.99376 9.52026 10.30777 11.17770 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038973 B = 0.004693 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.275390 B = 5964.289075 C = 6330.477074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.024 4.024 3 Si 1.060 2.940 4 H -0.295 1.295 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.311 4.311 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.118 3.882 11 H 0.097 0.903 12 C -0.138 4.138 13 C -0.130 4.130 14 C 0.134 3.866 15 H 0.093 0.907 16 C 0.132 3.868 17 H 0.090 0.910 18 N -0.715 5.715 19 C 0.583 3.417 20 O -0.527 6.527 21 C -0.049 4.049 22 C -0.112 4.112 23 C -0.213 4.213 24 C 0.016 3.984 25 N -0.541 5.541 26 H 0.415 0.585 27 C -0.134 4.134 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.388 0.612 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.169 0.831 37 H 0.073 0.927 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.033 -4.442 5.181 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.223 4.223 3 Si 0.895 3.105 4 H -0.225 1.225 5 H -0.229 1.229 6 H -0.203 1.203 7 C -0.438 4.438 8 H 0.097 0.903 9 N -0.324 5.324 10 C 0.012 3.988 11 H 0.114 0.886 12 C -0.177 4.177 13 C -0.170 4.170 14 C 0.025 3.975 15 H 0.112 0.888 16 C 0.026 3.974 17 H 0.108 0.892 18 N -0.365 5.365 19 C 0.370 3.630 20 O -0.402 6.402 21 C -0.162 4.162 22 C -0.138 4.138 23 C -0.237 4.237 24 C -0.120 4.120 25 N -0.137 5.137 26 H 0.252 0.748 27 C -0.174 4.174 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.222 0.778 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.092 0.908 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.853 -3.222 5.069 21.701 hybrid contribution 0.704 -0.874 -0.024 1.122 sum 21.557 -4.095 5.045 22.515 Atomic orbital electron populations 1.70900 1.05605 1.29831 1.50477 1.25772 0.96425 1.00725 0.99412 0.83890 0.74901 0.75982 0.75750 1.22478 1.22859 1.20274 1.20115 0.84235 0.96445 1.42969 0.90287 1.46834 1.08573 1.10360 1.66591 1.23301 0.90688 0.93741 0.91118 0.88565 1.23056 0.97552 0.97270 0.99850 1.22799 0.98213 0.95835 1.00138 1.23174 0.88618 0.93028 0.92707 0.88849 1.22573 0.80231 0.95286 0.99323 0.89180 1.46102 1.09778 1.06248 1.74384 1.17080 0.86360 0.82619 0.76972 1.90860 1.45514 1.54079 1.49787 1.20636 0.86589 0.91625 1.17333 1.21340 0.94894 0.94901 1.02700 1.20899 0.95117 0.96275 1.11423 1.22004 0.91710 0.90978 1.07288 1.42051 1.06142 1.08909 1.56590 0.74798 1.23226 1.00280 0.94649 0.99239 0.92716 0.91456 0.92818 0.92812 0.92378 0.77826 0.83551 0.84043 0.81368 0.90823 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.13 13.70 55.49 0.76 -28.37 16 2 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 3 Si 1.06 25.89 25.01 -169.99 -4.25 21.64 16 4 H -0.30 -6.80 6.60 56.52 0.37 -6.43 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.28 -6.16 4.94 56.52 0.28 -5.88 16 7 C -0.31 -8.86 10.81 -15.06 -0.16 -9.03 16 8 H 0.08 2.42 8.06 -52.48 -0.42 1.99 16 9 N -0.60 -14.37 2.83 -145.54 -0.41 -14.78 16 10 C 0.12 2.38 3.61 -62.55 -0.23 2.15 16 11 H 0.10 2.07 3.44 -51.93 -0.18 1.89 16 12 C -0.14 -2.35 6.20 -24.57 -0.15 -2.50 16 13 C -0.13 -2.22 6.29 -24.57 -0.15 -2.38 16 14 C 0.13 2.70 5.34 -62.80 -0.34 2.36 16 15 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 16 C 0.13 2.28 3.07 -65.43 -0.20 2.08 16 17 H 0.09 1.78 7.71 -51.93 -0.40 1.38 16 18 N -0.71 -9.69 3.62 -52.70 -0.19 -9.88 16 19 C 0.58 8.90 7.78 -12.85 -0.10 8.80 16 20 O -0.53 -10.28 16.62 5.19 0.09 -10.19 16 21 C -0.05 -0.60 7.06 -81.98 -0.58 -1.18 16 22 C -0.11 -1.36 10.65 -39.12 -0.42 -1.77 16 23 C -0.21 -1.99 10.81 -39.98 -0.43 -2.42 16 24 C 0.02 0.12 11.89 -16.91 -0.20 -0.08 16 25 N -0.54 -4.58 5.99 -9.39 -0.06 -4.63 16 26 H 0.42 2.32 8.19 -40.82 -0.33 1.98 16 27 C -0.13 -2.23 6.22 -23.98 -0.15 -2.38 16 28 H 0.26 8.20 8.73 -40.82 -0.36 7.85 16 29 H 0.07 1.23 6.51 -51.93 -0.34 0.90 16 30 H 0.05 0.72 7.83 -51.93 -0.41 0.31 16 31 H 0.05 0.77 6.49 -51.93 -0.34 0.43 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.39 3.95 7.16 -40.82 -0.29 3.66 16 34 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.17 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.06 0.79 7.35 -51.93 -0.38 0.41 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -34.50 301.74 -7.65 -42.15 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.93 Total: 6.64 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -3.21 Total: -7.13 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.10 Total: -57.66 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -4.25 Total: 21.64 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.50 -7.65 -42.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095169501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.392 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds