Wall clock time and date at job start Mon Mar 30 2020 02:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99833 * 2 1 4 4 H 1.48501 * 109.47096 * 240.00290 * 3 2 1 5 5 H 1.48507 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47406 * 120.00232 * 3 2 1 7 7 C 1.38806 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00404 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.83587 * 0.02716 * 9 7 2 11 11 H 1.08997 * 115.85750 * 0.33431 * 10 9 7 12 12 C 1.55847 * 101.05077 * 233.94644 * 10 9 7 13 13 C 1.55877 * 103.52933 * 327.67019 * 12 10 9 14 14 C 1.50240 * 130.84094 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.85732 * 359.66289 * 14 9 7 16 16 C 1.55848 * 101.05163 * 233.98621 * 14 9 7 17 17 H 1.09000 * 110.62759 * 208.57017 * 16 14 9 18 18 N 1.46507 * 110.62282 * 85.54974 * 16 14 9 19 19 C 1.34779 * 119.99455 * 155.00113 * 18 16 14 20 20 O 1.21687 * 120.00224 * 359.97438 * 19 18 16 21 21 C 1.46673 * 119.99466 * 179.97438 * 19 18 16 22 22 C 1.37877 * 126.23122 * 179.68684 * 21 19 18 23 23 C 1.39836 * 107.08337 * 179.85005 * 22 21 19 24 24 C 1.35451 * 107.86559 * 0.41840 * 23 22 21 25 25 N 1.35530 * 108.87331 * 359.74201 * 24 23 22 26 26 H 0.96998 * 125.67691 * 179.97438 * 25 24 23 27 27 C 1.54853 * 103.44532 * 327.06431 * 16 14 9 28 28 H 0.97003 * 120.00245 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.62865 * 85.55047 * 12 10 9 30 30 H 1.08998 * 110.62667 * 208.41417 * 12 10 9 31 31 H 1.09006 * 110.09627 * 241.13600 * 13 12 10 32 32 H 1.09001 * 111.60505 * 117.80684 * 13 12 10 33 33 H 0.97001 * 119.99889 * 335.00438 * 18 16 14 34 34 H 1.07997 * 126.45487 * 0.02562 * 22 21 19 35 35 H 1.08003 * 126.06370 * 180.16262 * 23 22 21 36 36 H 1.08000 * 125.56003 * 179.71798 * 24 23 22 37 37 H 1.08997 * 110.62526 * 241.50943 * 27 16 14 38 38 H 1.09001 * 110.62973 * 118.48666 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1499 -2.6706 -0.0006 11 1 -0.8012 -1.7966 -0.0063 12 6 -0.2740 -3.6109 1.2361 13 6 1.0818 -4.3800 1.2469 14 6 1.8189 -3.8071 -0.0005 15 1 2.9015 -3.9342 -0.0063 16 6 1.0675 -4.3846 -1.2378 17 1 0.8936 -5.4538 -1.1169 18 7 1.8176 -4.1181 -2.4677 19 6 1.6537 -4.9143 -3.5428 20 8 0.8832 -5.8548 -3.4916 21 6 2.4042 -4.6472 -4.7743 22 6 2.3411 -5.3779 -5.9418 23 6 3.2125 -4.7727 -6.8528 24 6 3.7870 -3.7121 -6.2365 25 7 3.3044 -3.6249 -4.9731 26 1 3.5524 -2.9540 -4.3178 27 6 -0.2736 -3.6103 -1.2381 28 1 -0.4850 0.8400 0.0004 29 1 -0.3812 -3.0291 2.1516 30 1 -1.1146 -4.2942 1.1160 31 1 0.9066 -5.4497 1.1318 32 1 1.6503 -4.1784 2.1548 33 1 2.4321 -3.3686 -2.5083 34 1 1.7313 -6.2512 -6.1201 35 1 3.3978 -5.0962 -7.8664 36 1 4.5117 -3.0451 -6.6796 37 1 -1.1126 -4.2956 -1.1174 38 1 -0.3807 -3.0281 -2.1534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096795750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:34 Heat of formation + Delta-G solvation = 53.392332 kcal Electronic energy + Delta-G solvation = -21571.984225 eV Core-core repulsion = 18416.285379 eV Total energy + Delta-G solvation = -3155.698847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14772 -39.52372 -38.02604 -33.88244 -32.59286 -30.98852 -29.61181 -29.15121 -28.67660 -27.47191 -24.29424 -22.93709 -21.12550 -20.30667 -19.89768 -19.84106 -18.97161 -18.24698 -17.05378 -15.84526 -15.52720 -14.92625 -14.80236 -14.08575 -14.01202 -13.75820 -13.47894 -13.33268 -13.04587 -12.48738 -12.24606 -12.09887 -11.86693 -11.29312 -11.16946 -11.00346 -10.95832 -10.54510 -10.41292 -10.18342 -9.98175 -9.86294 -9.32352 -9.21806 -9.03355 -8.98501 -8.59852 -8.13688 -7.01664 -5.81362 -3.20962 1.62743 2.80208 3.16840 3.28969 3.34376 3.36604 3.55616 3.67511 4.33532 5.04812 5.07379 5.12308 5.29520 5.37481 5.49216 5.59925 5.64876 5.82327 6.02829 6.05610 6.09923 6.11085 6.20286 6.26158 6.37426 6.45794 6.55212 6.69808 6.73655 6.79121 6.90939 6.96192 7.07582 7.28548 7.38699 7.40938 7.73317 7.93720 8.11165 8.53669 8.99986 9.63256 10.45058 11.27394 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.006202 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.401441 B = 4513.338913 C = 5765.712608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.218 4.218 8 H 0.077 0.923 9 N -0.592 5.592 10 C 0.154 3.846 11 H 0.153 0.847 12 C -0.138 4.138 13 C -0.127 4.127 14 C 0.124 3.876 15 H 0.085 0.915 16 C 0.130 3.870 17 H 0.083 0.917 18 N -0.705 5.705 19 C 0.582 3.418 20 O -0.542 6.542 21 C -0.047 4.047 22 C -0.117 4.117 23 C -0.215 4.215 24 C 0.016 3.984 25 N -0.537 5.537 26 H 0.419 0.581 27 C -0.144 4.144 28 H 0.255 0.745 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.396 0.604 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.168 0.832 37 H 0.055 0.945 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 -6.769 -7.148 11.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.313 5.313 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.178 4.178 13 C -0.167 4.167 14 C 0.016 3.984 15 H 0.103 0.897 16 C 0.024 3.976 17 H 0.101 0.899 18 N -0.354 5.354 19 C 0.369 3.631 20 O -0.419 6.419 21 C -0.160 4.160 22 C -0.143 4.143 23 C -0.240 4.240 24 C -0.120 4.120 25 N -0.133 5.133 26 H 0.256 0.744 27 C -0.184 4.184 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.230 0.770 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.186 0.814 37 H 0.074 0.926 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.162 -6.983 -6.927 11.109 hybrid contribution 0.964 1.575 0.215 1.859 sum 6.127 -5.409 -6.712 10.576 Atomic orbital electron populations 1.69448 1.05007 1.25188 1.56899 1.24706 0.95588 0.97477 1.02703 0.86152 0.78380 0.83126 0.77757 1.21405 1.21541 1.21235 1.18938 0.90119 0.81964 1.43606 0.90541 1.46540 1.01682 0.98537 1.84509 1.23776 0.87328 0.95306 0.88878 0.82980 1.23234 0.95106 0.98279 1.01138 1.23027 0.97593 0.97705 0.98378 1.23156 0.95997 0.87013 0.92268 0.89656 1.22636 0.92769 0.98817 0.83415 0.89950 1.45915 1.45292 1.31118 1.13069 1.17102 0.81582 0.82610 0.81794 1.90793 1.37666 1.30548 1.82931 1.20663 1.01763 0.95733 0.97860 1.21281 1.01050 1.00552 0.91424 1.20856 1.03286 0.99198 1.00620 1.21999 1.03071 1.01903 0.85062 1.42126 1.33459 1.24644 1.13075 0.74369 1.23483 0.94972 0.98435 1.01536 0.93399 0.92704 0.93146 0.92987 0.92249 0.76998 0.83717 0.84176 0.81444 0.92642 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.28 10.46 55.49 0.58 -24.70 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.22 -5.54 10.59 -15.06 -0.16 -5.70 16 8 H 0.08 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.59 -13.67 2.98 -145.81 -0.43 -14.11 16 10 C 0.15 3.45 4.72 -62.78 -0.30 3.15 16 11 H 0.15 3.93 5.52 -51.93 -0.29 3.64 16 12 C -0.14 -2.70 6.46 -23.67 -0.15 -2.85 16 13 C -0.13 -2.28 6.53 -23.70 -0.15 -2.43 16 14 C 0.12 2.38 5.01 -62.82 -0.31 2.06 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 16 C 0.13 2.42 2.82 -65.43 -0.18 2.24 16 17 H 0.08 1.55 7.26 -51.93 -0.38 1.17 16 18 N -0.71 -12.24 5.07 -52.69 -0.27 -12.51 16 19 C 0.58 10.40 7.79 -12.85 -0.10 10.30 16 20 O -0.54 -11.27 16.53 5.20 0.09 -11.18 16 21 C -0.05 -0.71 7.06 -81.98 -0.58 -1.29 16 22 C -0.12 -1.65 10.65 -39.12 -0.42 -2.07 16 23 C -0.22 -2.49 10.81 -39.98 -0.43 -2.92 16 24 C 0.02 0.17 11.89 -16.91 -0.20 -0.04 16 25 N -0.54 -6.50 5.99 -9.39 -0.06 -6.55 16 26 H 0.42 4.34 8.19 -40.82 -0.33 4.01 16 27 C -0.14 -2.94 6.23 -24.21 -0.15 -3.09 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.88 7.82 -51.93 -0.41 0.48 16 31 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 6.47 7.79 -40.82 -0.32 6.16 16 34 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 35 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.05 1.06 7.82 -51.93 -0.41 0.65 16 38 H 0.06 1.32 7.98 -51.93 -0.41 0.91 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -30.20 312.93 -8.67 -38.87 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -3.24 Total: -2.96 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.18 Total: -57.86 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.20 -8.67 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096795750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.259 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds