Wall clock time and date at job start Mon Mar 30 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99833 * 2 1 4 4 H 1.48501 * 109.47096 * 240.00290 * 3 2 1 5 5 H 1.48507 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47406 * 120.00232 * 3 2 1 7 7 C 1.38806 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00404 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.83587 * 0.02716 * 9 7 2 11 11 H 1.08997 * 115.85750 * 0.33431 * 10 9 7 12 12 C 1.55847 * 101.05077 * 233.94644 * 10 9 7 13 13 C 1.55877 * 103.52933 * 327.67019 * 12 10 9 14 14 C 1.50240 * 130.84094 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.85732 * 359.66289 * 14 9 7 16 16 C 1.55848 * 101.05163 * 233.98621 * 14 9 7 17 17 H 1.09000 * 110.62759 * 208.57017 * 16 14 9 18 18 N 1.46507 * 110.62282 * 85.54974 * 16 14 9 19 19 C 1.34779 * 119.99455 * 155.00113 * 18 16 14 20 20 O 1.21687 * 120.00224 * 359.97438 * 19 18 16 21 21 C 1.46673 * 119.99466 * 179.97438 * 19 18 16 22 22 C 1.37877 * 126.23122 * 179.68684 * 21 19 18 23 23 C 1.39836 * 107.08337 * 179.85005 * 22 21 19 24 24 C 1.35451 * 107.86559 * 0.41840 * 23 22 21 25 25 N 1.35530 * 108.87331 * 359.74201 * 24 23 22 26 26 H 0.96998 * 125.67691 * 179.97438 * 25 24 23 27 27 C 1.54853 * 103.44532 * 327.06431 * 16 14 9 28 28 H 0.97003 * 120.00245 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.62865 * 85.55047 * 12 10 9 30 30 H 1.08998 * 110.62667 * 208.41417 * 12 10 9 31 31 H 1.09006 * 110.09627 * 241.13600 * 13 12 10 32 32 H 1.09001 * 111.60505 * 117.80684 * 13 12 10 33 33 H 0.97001 * 119.99889 * 335.00438 * 18 16 14 34 34 H 1.07997 * 126.45487 * 0.02562 * 22 21 19 35 35 H 1.08003 * 126.06370 * 180.16262 * 23 22 21 36 36 H 1.08000 * 125.56003 * 179.71798 * 24 23 22 37 37 H 1.08997 * 110.62526 * 241.50943 * 27 16 14 38 38 H 1.09001 * 110.62973 * 118.48666 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1499 -2.6706 -0.0006 11 1 -0.8012 -1.7966 -0.0063 12 6 -0.2740 -3.6109 1.2361 13 6 1.0818 -4.3800 1.2469 14 6 1.8189 -3.8071 -0.0005 15 1 2.9015 -3.9342 -0.0063 16 6 1.0675 -4.3846 -1.2378 17 1 0.8936 -5.4538 -1.1169 18 7 1.8176 -4.1181 -2.4677 19 6 1.6537 -4.9143 -3.5428 20 8 0.8832 -5.8548 -3.4916 21 6 2.4042 -4.6472 -4.7743 22 6 2.3411 -5.3779 -5.9418 23 6 3.2125 -4.7727 -6.8528 24 6 3.7870 -3.7121 -6.2365 25 7 3.3044 -3.6249 -4.9731 26 1 3.5524 -2.9540 -4.3178 27 6 -0.2736 -3.6103 -1.2381 28 1 -0.4850 0.8400 0.0004 29 1 -0.3812 -3.0291 2.1516 30 1 -1.1146 -4.2942 1.1160 31 1 0.9066 -5.4497 1.1318 32 1 1.6503 -4.1784 2.1548 33 1 2.4321 -3.3686 -2.5083 34 1 1.7313 -6.2512 -6.1201 35 1 3.3978 -5.0962 -7.8664 36 1 4.5117 -3.0451 -6.6796 37 1 -1.1126 -4.2956 -1.1174 38 1 -0.3807 -3.0281 -2.1534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096795750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:33 Heat of formation + Delta-G solvation = 34.128231 kcal Electronic energy + Delta-G solvation = -21572.819580 eV Core-core repulsion = 18416.285379 eV Total energy + Delta-G solvation = -3156.534201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.19471 -41.02840 -39.49135 -35.39506 -34.43556 -31.98032 -30.98144 -30.87231 -30.17048 -28.90106 -26.14415 -24.23519 -22.44764 -21.62117 -21.28456 -21.00286 -20.49127 -19.59889 -18.85724 -17.29536 -16.83153 -16.68088 -16.17303 -15.73910 -15.40399 -15.10686 -14.65421 -14.55347 -14.46733 -13.77279 -13.67238 -13.48878 -13.16618 -12.93578 -12.88051 -12.79701 -12.69064 -12.12070 -12.00586 -11.93200 -11.71906 -11.38986 -11.01450 -10.95135 -10.77443 -10.09274 -9.94567 -9.16799 -8.88644 -7.76749 -5.17177 0.49713 1.47867 1.50368 1.56307 1.86824 2.14771 2.29469 2.40490 2.49171 3.36154 3.43164 3.88705 4.00372 4.05980 4.24565 4.32690 4.44197 4.44624 4.45817 4.52431 4.61098 4.68222 4.80772 4.88550 5.05178 5.12821 5.14846 5.16896 5.28092 5.36527 5.48838 5.55421 5.65573 5.79439 5.88069 5.96544 6.25726 6.48691 6.62548 7.04085 7.16574 7.71316 8.57463 9.30436 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.006202 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.401441 B = 4513.338913 C = 5765.712608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.303 1.303 6 H -0.282 1.282 7 C -0.217 4.217 8 H 0.087 0.913 9 N -0.610 5.610 10 C 0.140 3.860 11 H 0.116 0.884 12 C -0.132 4.132 13 C -0.119 4.119 14 C 0.127 3.873 15 H 0.102 0.898 16 C 0.140 3.860 17 H 0.088 0.912 18 N -0.702 5.702 19 C 0.582 3.418 20 O -0.580 6.580 21 C -0.085 4.085 22 C -0.125 4.125 23 C -0.225 4.225 24 C 0.040 3.960 25 N -0.533 5.533 26 H 0.426 0.574 27 C -0.135 4.135 28 H 0.245 0.755 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.401 0.599 34 H 0.139 0.861 35 H 0.167 0.833 36 H 0.212 0.788 37 H 0.066 0.934 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.936 -7.292 -8.107 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.229 1.229 6 H -0.209 1.209 7 C -0.346 4.346 8 H 0.105 0.895 9 N -0.331 5.331 10 C 0.034 3.966 11 H 0.134 0.866 12 C -0.171 4.171 13 C -0.158 4.158 14 C 0.020 3.980 15 H 0.119 0.881 16 C 0.033 3.967 17 H 0.106 0.894 18 N -0.350 5.350 19 C 0.371 3.629 20 O -0.460 6.460 21 C -0.198 4.198 22 C -0.152 4.152 23 C -0.248 4.248 24 C -0.097 4.097 25 N -0.129 5.129 26 H 0.265 0.735 27 C -0.175 4.175 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.236 0.764 34 H 0.157 0.843 35 H 0.184 0.816 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.442 -7.523 -7.879 13.193 hybrid contribution 0.296 1.704 0.424 1.781 sum 7.739 -5.819 -7.454 12.219 Atomic orbital electron populations 1.69713 1.06301 1.24900 1.58874 1.25442 0.96274 1.00404 1.03786 0.85197 0.76988 0.79332 0.78032 1.20217 1.22939 1.20889 1.19329 0.90797 0.82900 1.41560 0.89519 1.46716 1.02154 0.99588 1.84645 1.23602 0.86854 0.95078 0.91114 0.86647 1.23138 0.97167 0.98034 0.98766 1.22990 0.96091 0.99013 0.97753 1.23344 0.97061 0.84751 0.92844 0.88054 1.22460 0.91767 0.98565 0.83896 0.89427 1.45823 1.45161 1.31287 1.12766 1.17450 0.81150 0.81853 0.82435 1.90755 1.39474 1.32126 1.83694 1.20324 1.04105 0.98132 0.97235 1.21518 1.01331 1.00437 0.91924 1.21215 1.02741 0.99349 1.01540 1.22771 1.01859 1.01270 0.83782 1.42158 1.32740 1.24007 1.13999 0.73519 1.23349 0.96735 0.98075 0.99349 0.94502 0.94328 0.91016 0.90105 0.91850 0.76421 0.84303 0.81575 0.77127 0.91518 0.94907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.92 10.46 21.65 0.23 -53.69 16 2 C -0.07 -3.52 5.50 84.86 0.47 -3.05 16 3 Si 0.97 43.12 29.55 68.60 2.03 45.15 16 4 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.22 -10.95 10.59 84.03 0.89 -10.06 16 8 H 0.09 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.61 -27.99 2.98 -615.23 -1.83 -29.83 16 10 C 0.14 6.38 4.72 46.24 0.22 6.60 16 11 H 0.12 6.24 5.52 -2.39 -0.01 6.22 16 12 C -0.13 -5.05 6.46 32.57 0.21 -4.84 16 13 C -0.12 -3.99 6.53 32.56 0.21 -3.78 16 14 C 0.13 4.66 5.01 46.21 0.23 4.89 16 15 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 16 C 0.14 5.08 2.82 46.61 0.13 5.22 16 17 H 0.09 3.16 7.26 -2.39 -0.02 3.14 16 18 N -0.70 -23.99 5.07 -438.85 -2.22 -26.22 16 19 C 0.58 20.74 7.79 86.45 0.67 21.41 16 20 O -0.58 -24.36 16.53 -4.31 -0.07 -24.43 16 21 C -0.08 -2.52 7.06 40.35 0.28 -2.23 16 22 C -0.12 -3.42 10.65 22.57 0.24 -3.17 16 23 C -0.23 -4.54 10.81 22.01 0.24 -4.30 16 24 C 0.04 0.69 11.89 83.48 0.99 1.68 16 25 N -0.53 -11.71 5.99 -183.62 -1.10 -12.81 16 26 H 0.43 7.92 8.19 -92.71 -0.76 7.16 16 27 C -0.13 -5.54 6.23 32.23 0.20 -5.34 16 28 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 2.41 7.82 -2.39 -0.02 2.39 16 31 H 0.08 2.28 7.85 -2.38 -0.02 2.26 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.40 12.80 7.79 -92.71 -0.72 12.08 16 34 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 35 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.21 1.74 8.06 -2.91 -0.02 1.71 16 37 H 0.07 2.54 7.82 -2.39 -0.02 2.52 16 38 H 0.03 1.49 7.98 -2.39 -0.02 1.47 16 Total: -1.00 -66.72 312.93 1.63 -65.09 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.39 Total: 33.71 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 4.99 Total: 3.02 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -4.93 Total: -122.54 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.07 Total: -24.43 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.72 1.63 -65.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096795750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.216 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds