Wall clock time and date at job start Mon Mar 30 2020 01:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99853 * 2 1 4 4 C 1.53002 * 109.47188 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47134 * 65.00030 * 4 3 2 6 6 C 1.46495 * 120.00187 * 269.99765 * 5 4 3 7 7 C 1.50697 * 109.47337 * 270.00366 * 6 5 4 8 8 H 1.07999 * 119.99908 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00075 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00241 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99890 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47175 * 90.00231 * 11 9 7 13 13 H 1.48507 * 109.47069 * 209.99927 * 11 9 7 14 14 H 1.48493 * 109.47302 * 329.99849 * 11 9 7 15 15 C 1.34780 * 119.99750 * 89.99993 * 5 4 3 16 16 O 1.21277 * 119.99500 * 179.97438 * 15 5 4 17 17 C 1.50696 * 120.00321 * 0.02562 * 15 5 4 18 18 F 1.39905 * 110.43334 * 310.69926 * 17 15 5 19 19 C 1.54810 * 110.49037 * 188.15561 * 17 15 5 20 20 C 1.55340 * 101.93235 * 220.33674 * 19 17 15 21 21 O 1.44378 * 103.50502 * 37.05429 * 20 19 17 22 22 C 1.43744 * 106.97222 * 319.90589 * 21 20 19 23 23 H 1.08999 * 109.46993 * 59.99938 * 1 2 3 24 24 H 1.09000 * 109.46888 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47539 * 299.99704 * 1 2 3 26 26 H 1.08998 * 109.47188 * 60.00402 * 3 2 1 27 27 H 1.08999 * 109.47074 * 299.99897 * 3 2 1 28 28 H 1.08996 * 109.46969 * 304.99918 * 4 3 2 29 29 H 1.09002 * 109.46888 * 185.00146 * 4 3 2 30 30 H 1.09002 * 109.46955 * 30.00111 * 6 5 4 31 31 H 1.08995 * 109.47547 * 149.99489 * 6 5 4 32 32 H 0.97003 * 120.00407 * 180.02562 * 10 9 7 33 33 H 1.09005 * 110.90539 * 338.50646 * 19 17 15 34 34 H 1.08999 * 110.90782 * 102.10692 * 19 17 15 35 35 H 1.08994 * 110.64130 * 278.53231 * 20 19 17 36 36 H 1.09004 * 110.72078 * 155.60691 * 20 19 17 37 37 H 1.08997 * 109.88339 * 267.08778 * 22 21 20 38 38 H 1.09001 * 110.00611 * 146.00792 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1053 -0.8919 -1.3428 7 6 5.5010 -1.2976 -0.9450 8 1 6.2198 -0.5457 -0.6545 9 6 5.8604 -2.6287 -0.9518 10 7 7.0786 -2.9827 -0.6050 11 14 4.6174 -3.9291 -1.4549 12 1 4.7028 -4.1550 -2.9201 13 1 4.9114 -5.1975 -0.7406 14 1 3.2499 -3.4689 -1.1038 15 6 4.2614 1.3339 -2.3218 16 8 4.6263 0.8205 -3.3582 17 6 4.1287 2.8322 -2.2290 18 9 2.8874 3.1798 -1.6852 19 6 4.3097 3.4796 -3.6235 20 6 5.1553 4.7382 -3.2859 21 8 6.0434 4.2784 -2.2446 22 6 5.2729 3.4237 -1.3831 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5683 0.8409 29 1 3.9784 2.1766 0.0889 30 1 3.3853 -1.3628 -0.6734 31 1 3.9120 -1.2113 -2.3668 32 1 7.3316 -3.9191 -0.6102 33 1 4.8527 2.8135 -4.2941 34 1 3.3466 3.7589 -4.0507 35 1 4.5176 5.5425 -2.9191 36 1 5.7226 5.0667 -4.1568 37 1 4.8615 4.0037 -0.5571 38 1 5.9006 2.6212 -0.9958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117381138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:46 Heat of formation + Delta-G solvation = -156.241352 kcal Electronic energy + Delta-G solvation = -23169.029252 eV Core-core repulsion = 19541.178030 eV Total energy + Delta-G solvation = -3627.851221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.09667 -39.76096 -38.45385 -37.54013 -35.15777 -32.64516 -31.67176 -29.97513 -29.51296 -27.56826 -26.08375 -23.96312 -22.96505 -22.67860 -21.28601 -18.95558 -17.42395 -17.07892 -16.79628 -16.66741 -16.12277 -15.63145 -15.31943 -15.05852 -14.86409 -14.49741 -14.23217 -14.01509 -13.91829 -13.21574 -13.05453 -12.60055 -12.38951 -12.11951 -11.97781 -11.72368 -11.60648 -11.56216 -11.48021 -10.93188 -10.89231 -10.84763 -10.42115 -10.12247 -9.92389 -9.53587 -9.44656 -9.16410 -8.55554 -7.84068 -6.06323 -4.05126 2.89969 3.31954 3.37016 3.43325 3.44870 3.73047 3.95421 4.04527 4.24968 4.43576 4.53990 4.75621 4.94483 5.05519 5.23947 5.27773 5.34778 5.38359 5.47507 5.50491 5.53181 5.55971 5.61026 5.64065 5.74570 5.77408 6.01509 6.18312 6.62092 6.80505 6.98264 7.22797 7.33831 7.63342 8.07040 8.43835 8.67548 8.95303 9.53830 11.06798 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.007542 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.549660 B = 3711.821410 C = 4859.006923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.037 3.963 4 C 0.108 3.892 5 N -0.571 5.571 6 C 0.218 3.782 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.074 3.926 10 N -0.897 5.897 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.261 1.261 15 C 0.500 3.500 16 O -0.517 6.517 17 C 0.066 3.934 18 F -0.187 7.187 19 C -0.165 4.165 20 C 0.046 3.954 21 O -0.363 6.363 22 C 0.036 3.964 23 H 0.036 0.964 24 H 0.082 0.918 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.264 0.736 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.291 14.360 0.042 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.041 4.041 4 C -0.016 4.016 5 N -0.300 5.300 6 C 0.099 3.901 7 C -0.569 4.569 8 H 0.092 0.908 9 C -0.128 4.128 10 N -0.536 5.536 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.283 3.717 16 O -0.393 6.393 17 C 0.044 3.956 18 F -0.168 7.168 19 C -0.203 4.203 20 C -0.030 4.030 21 O -0.282 6.282 22 C -0.042 4.042 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.674 13.774 -0.425 17.431 hybrid contribution -1.149 -0.532 -0.046 1.267 sum -11.823 13.242 -0.471 17.759 Atomic orbital electron populations 1.22685 0.81930 1.02430 0.99347 1.88021 1.18870 1.27570 1.95282 1.23366 0.94609 0.85150 1.00974 1.21666 0.91994 0.99044 0.88882 1.47862 1.63022 1.09157 1.09999 1.19785 0.98053 0.74146 0.98159 1.21314 0.95944 0.93663 1.45992 0.90779 1.24809 0.95170 0.98312 0.94522 1.69894 1.18118 1.17317 1.48251 0.86882 0.82508 0.81391 0.79245 1.20023 1.21089 1.18590 1.20066 0.79638 0.87149 0.84855 1.90694 1.46199 1.73284 1.29137 1.22647 0.81631 0.95317 0.96044 1.92822 1.43791 1.93121 1.87054 1.23731 1.03204 0.98021 0.95313 1.23688 0.92443 0.95398 0.91492 1.88948 1.33852 1.64896 1.40468 1.23813 0.92564 0.94948 0.92853 0.94525 0.89925 0.94510 0.92930 0.91744 0.88398 0.89988 0.93486 0.94826 0.92577 0.86531 0.88591 0.91722 0.87990 0.90055 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.32 9.53 -35.23 -0.34 -6.66 16 3 C 0.04 0.53 5.78 37.16 0.21 0.75 16 4 C 0.11 1.78 5.32 -4.04 -0.02 1.75 16 5 N -0.57 -11.93 2.42 -175.07 -0.42 -12.36 16 6 C 0.22 5.46 4.05 -5.20 -0.02 5.44 16 7 C -0.53 -15.31 9.94 -34.44 -0.34 -15.66 16 8 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 10 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 11 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 12 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 15 C 0.50 10.23 6.58 -10.99 -0.07 10.15 16 16 O -0.52 -12.50 15.01 5.56 0.08 -12.42 16 17 C 0.07 1.01 1.10 -90.24 -0.10 0.91 16 18 F -0.19 -2.60 12.53 2.25 0.03 -2.57 16 19 C -0.16 -2.20 6.41 -24.54 -0.16 -2.35 16 20 C 0.05 0.52 7.73 38.40 0.30 0.82 16 21 O -0.36 -5.34 11.52 -35.23 -0.41 -5.75 16 22 C 0.04 0.51 5.61 37.73 0.21 0.72 16 23 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.94 5.78 -51.93 -0.30 0.64 16 28 H 0.10 1.68 8.07 -51.93 -0.42 1.26 16 29 H 0.08 1.12 4.89 -51.93 -0.25 0.86 16 30 H 0.05 1.17 6.17 -51.93 -0.32 0.85 16 31 H 0.03 0.90 6.85 -51.93 -0.36 0.55 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.12 1.79 6.80 -51.93 -0.35 1.44 16 34 H 0.10 1.07 8.12 -51.93 -0.42 0.65 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.94 7.75 -51.93 -0.40 0.54 16 38 H 0.11 1.74 7.65 -51.93 -0.40 1.34 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -34.45 309.49 -4.61 -39.06 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.35 Total: -0.36 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 1.02 Total: 6.15 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.35 Total: -39.41 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.66 Total: -24.83 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.03 Total: -2.57 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.45 -4.61 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117381138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.185 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds