Wall clock time and date at job start Mon Mar 30 2020 01:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99853 * 2 1 4 4 C 1.53002 * 109.47188 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47134 * 65.00030 * 4 3 2 6 6 C 1.46495 * 120.00187 * 269.99765 * 5 4 3 7 7 C 1.50697 * 109.47337 * 270.00366 * 6 5 4 8 8 H 1.07999 * 119.99908 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00075 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00241 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99890 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47175 * 90.00231 * 11 9 7 13 13 H 1.48507 * 109.47069 * 209.99927 * 11 9 7 14 14 H 1.48493 * 109.47302 * 329.99849 * 11 9 7 15 15 C 1.34780 * 119.99750 * 89.99993 * 5 4 3 16 16 O 1.21277 * 119.99500 * 179.97438 * 15 5 4 17 17 C 1.50696 * 120.00321 * 0.02562 * 15 5 4 18 18 F 1.39905 * 110.43334 * 310.69926 * 17 15 5 19 19 C 1.54810 * 110.49037 * 188.15561 * 17 15 5 20 20 C 1.55340 * 101.93235 * 220.33674 * 19 17 15 21 21 O 1.44378 * 103.50502 * 37.05429 * 20 19 17 22 22 C 1.43744 * 106.97222 * 319.90589 * 21 20 19 23 23 H 1.08999 * 109.46993 * 59.99938 * 1 2 3 24 24 H 1.09000 * 109.46888 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47539 * 299.99704 * 1 2 3 26 26 H 1.08998 * 109.47188 * 60.00402 * 3 2 1 27 27 H 1.08999 * 109.47074 * 299.99897 * 3 2 1 28 28 H 1.08996 * 109.46969 * 304.99918 * 4 3 2 29 29 H 1.09002 * 109.46888 * 185.00146 * 4 3 2 30 30 H 1.09002 * 109.46955 * 30.00111 * 6 5 4 31 31 H 1.08995 * 109.47547 * 149.99489 * 6 5 4 32 32 H 0.97003 * 120.00407 * 180.02562 * 10 9 7 33 33 H 1.09005 * 110.90539 * 338.50646 * 19 17 15 34 34 H 1.08999 * 110.90782 * 102.10692 * 19 17 15 35 35 H 1.08994 * 110.64130 * 278.53231 * 20 19 17 36 36 H 1.09004 * 110.72078 * 155.60691 * 20 19 17 37 37 H 1.08997 * 109.88339 * 267.08778 * 22 21 20 38 38 H 1.09001 * 110.00611 * 146.00792 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1053 -0.8919 -1.3428 7 6 5.5010 -1.2976 -0.9450 8 1 6.2198 -0.5457 -0.6545 9 6 5.8604 -2.6287 -0.9518 10 7 7.0786 -2.9827 -0.6050 11 14 4.6174 -3.9291 -1.4549 12 1 4.7028 -4.1550 -2.9201 13 1 4.9114 -5.1975 -0.7406 14 1 3.2499 -3.4689 -1.1038 15 6 4.2614 1.3339 -2.3218 16 8 4.6263 0.8205 -3.3582 17 6 4.1287 2.8322 -2.2290 18 9 2.8874 3.1798 -1.6852 19 6 4.3097 3.4796 -3.6235 20 6 5.1553 4.7382 -3.2859 21 8 6.0434 4.2784 -2.2446 22 6 5.2729 3.4237 -1.3831 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5683 0.8409 29 1 3.9784 2.1766 0.0889 30 1 3.3853 -1.3628 -0.6734 31 1 3.9120 -1.2113 -2.3668 32 1 7.3316 -3.9191 -0.6102 33 1 4.8527 2.8135 -4.2941 34 1 3.3466 3.7589 -4.0507 35 1 4.5176 5.5425 -2.9191 36 1 5.7226 5.0667 -4.1568 37 1 4.8615 4.0037 -0.5571 38 1 5.9006 2.6212 -0.9958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117381138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:46 Heat of formation + Delta-G solvation = -182.355925 kcal Electronic energy + Delta-G solvation = -23170.161665 eV Core-core repulsion = 19541.178030 eV Total energy + Delta-G solvation = -3628.983634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.27226 -41.19409 -39.69132 -38.77567 -36.79123 -34.80621 -32.90335 -31.56641 -30.63648 -29.27884 -27.14508 -25.50457 -24.35951 -23.93552 -22.74023 -20.41550 -19.15622 -18.79886 -18.14581 -17.94060 -17.24952 -16.99709 -16.66655 -16.42304 -16.05676 -15.79384 -15.68712 -15.46937 -15.33001 -14.73397 -14.47380 -14.21965 -13.90508 -13.52645 -13.40810 -13.12923 -13.00042 -12.76754 -12.60407 -12.56387 -12.48866 -12.08506 -11.96717 -11.92742 -11.76143 -11.05106 -10.84014 -10.69536 -10.53268 -9.58646 -8.35558 -6.40241 1.31281 1.33685 1.34114 1.44753 1.90061 2.29838 2.65516 2.78179 2.91800 2.99204 3.06537 3.24884 3.68046 3.90417 4.07870 4.12174 4.18426 4.34321 4.41901 4.47841 4.52375 4.53813 4.59761 4.67115 4.73083 4.84363 4.87284 4.89575 4.92272 4.99431 5.40576 5.48224 5.62087 6.17976 6.26774 6.47983 6.60138 7.00461 7.24507 8.80978 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.007542 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.549660 B = 3711.821410 C = 4859.006923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.042 3.958 4 C 0.100 3.900 5 N -0.579 5.579 6 C 0.234 3.766 7 C -0.537 4.537 8 H 0.034 0.966 9 C 0.016 3.984 10 N -0.941 5.941 11 Si 0.941 3.059 12 H -0.275 1.275 13 H -0.272 1.272 14 H -0.243 1.243 15 C 0.488 3.512 16 O -0.567 6.567 17 C 0.078 3.922 18 F -0.173 7.173 19 C -0.165 4.165 20 C 0.049 3.951 21 O -0.385 6.385 22 C 0.039 3.961 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.269 0.731 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 16.090 0.416 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.035 4.035 4 C -0.022 4.022 5 N -0.308 5.308 6 C 0.112 3.888 7 C -0.575 4.575 8 H 0.052 0.948 9 C -0.182 4.182 10 N -0.581 5.581 11 Si 0.764 3.236 12 H -0.201 1.201 13 H -0.197 1.197 14 H -0.166 1.166 15 C 0.273 3.727 16 O -0.446 6.446 17 C 0.056 3.944 18 F -0.153 7.153 19 C -0.203 4.203 20 C -0.027 4.027 21 O -0.304 6.304 22 C -0.039 4.039 23 H 0.062 0.938 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.148 15.548 -0.019 20.362 hybrid contribution -0.347 -1.008 -0.147 1.076 sum -13.495 14.540 -0.166 19.838 Atomic orbital electron populations 1.22872 0.79813 1.03299 1.00854 1.87956 1.21323 1.28850 1.95607 1.23352 0.92550 0.84889 1.02735 1.21986 0.94122 0.99780 0.86301 1.47930 1.63095 1.07807 1.11953 1.19325 0.95550 0.77287 0.96662 1.21529 0.97194 0.93125 1.45695 0.94790 1.25745 0.97252 1.00834 0.94401 1.70032 1.20296 1.18172 1.49638 0.85802 0.80560 0.78522 0.78687 1.20056 1.19699 1.16648 1.21025 0.78231 0.89540 0.83858 1.90658 1.48144 1.74901 1.30902 1.22400 0.82694 0.91265 0.98032 1.92852 1.42894 1.92602 1.86965 1.23776 1.04679 0.98337 0.93538 1.23951 0.92365 0.94825 0.91514 1.88929 1.35194 1.64876 1.41375 1.23794 0.91622 0.94840 0.93617 0.93800 0.89544 0.92115 0.89256 0.91595 0.89650 0.87196 0.92838 0.96821 0.92201 0.89246 0.86072 0.88452 0.86047 0.86365 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.42 -13.14 9.53 -148.98 -1.42 -14.56 16 3 C 0.04 1.10 5.78 71.98 0.42 1.52 16 4 C 0.10 3.20 5.32 86.38 0.46 3.66 16 5 N -0.58 -24.50 2.42 -826.18 -2.00 -26.50 16 6 C 0.23 11.94 4.05 85.63 0.35 12.29 16 7 C -0.54 -32.26 9.94 25.60 0.25 -32.00 16 8 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 9 C 0.02 0.97 5.47 84.65 0.46 1.44 16 10 N -0.94 -60.19 13.96 21.45 0.30 -59.89 16 11 Si 0.94 45.93 27.47 68.60 1.88 47.81 16 12 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.24 -11.04 6.54 99.48 0.65 -10.39 16 15 C 0.49 20.26 6.58 87.66 0.58 20.84 16 16 O -0.57 -28.51 15.01 -3.02 -0.05 -28.56 16 17 C 0.08 2.29 1.10 -10.55 -0.01 2.28 16 18 F -0.17 -4.24 12.53 44.97 0.56 -3.67 16 19 C -0.17 -4.13 6.41 32.02 0.21 -3.92 16 20 C 0.05 0.96 7.73 72.79 0.56 1.52 16 21 O -0.38 -10.63 11.52 -148.98 -1.72 -12.34 16 22 C 0.04 1.05 5.61 72.36 0.41 1.46 16 23 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 24 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.72 5.78 -2.39 -0.01 1.71 16 28 H 0.09 2.92 8.07 -2.39 -0.02 2.90 16 29 H 0.11 2.79 4.89 -2.39 -0.01 2.78 16 30 H 0.05 2.66 6.17 -2.39 -0.01 2.65 16 31 H 0.01 0.75 6.85 -2.39 -0.02 0.74 16 32 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 33 H 0.09 2.77 6.80 -2.38 -0.02 2.75 16 34 H 0.12 2.37 8.12 -2.39 -0.02 2.35 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.12 2.31 7.75 -2.39 -0.02 2.30 16 38 H 0.08 2.65 7.65 -2.39 -0.02 2.63 16 Total: -1.00 -78.47 309.49 3.50 -74.97 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.01 Total: 11.81 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 4.93 Total: 10.93 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -1.70 Total: -86.39 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -3.18 Total: -55.46 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.56 Total: -3.67 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.81 kcal Total: -78.47 3.50 -74.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117381138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.390 kcal (2) G-P(sol) polarization free energy of solvation -78.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds