Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47606 * 120.00103 * 3 2 1 6 6 H 1.48506 * 109.47130 * 240.00210 * 3 2 1 7 7 C 1.40029 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99552 * 4.82441 * 7 2 1 9 9 C 1.41330 * 119.99910 * 184.82186 * 7 2 1 10 10 C 1.40621 * 119.78748 * 185.13158 * 9 7 2 11 11 C 1.38302 * 119.12810 * 180.02562 * 10 9 7 12 12 C 1.38698 * 118.67154 * 359.97438 * 11 10 9 13 13 C 1.39630 * 119.49318 * 0.02562 * 12 11 10 14 14 N 1.39271 * 119.56860 * 180.02562 * 13 12 11 15 15 C 1.34771 * 120.00511 * 339.10164 * 14 13 12 16 16 O 1.21278 * 119.99494 * 3.72448 * 15 14 13 17 17 C 1.50697 * 120.00501 * 183.71797 * 15 14 13 18 18 H 1.08999 * 109.47231 * 320.00352 * 17 15 14 19 19 N 1.46893 * 109.47421 * 200.00124 * 17 15 14 20 20 C 1.53005 * 109.46848 * 79.99916 * 17 15 14 21 21 C 1.53000 * 109.47169 * 185.00150 * 20 17 15 22 22 C 1.53002 * 117.49867 * 243.75302 * 21 20 17 23 23 C 1.52997 * 117.49912 * 175.09008 * 21 20 17 24 24 N 1.31925 * 120.85501 * 359.72050 * 13 12 11 25 25 H 0.96996 * 119.99946 * 174.99566 * 1 2 3 26 26 H 1.08002 * 120.43205 * 359.97438 * 10 9 7 27 27 H 1.08004 * 120.66389 * 180.02562 * 11 10 9 28 28 H 1.08002 * 120.25176 * 180.02562 * 12 11 10 29 29 H 0.97000 * 119.99794 * 159.10492 * 14 13 12 30 30 H 1.00898 * 111.00271 * 300.00328 * 19 17 15 31 31 H 1.00897 * 111.00142 * 63.96000 * 19 17 15 32 32 H 1.09000 * 109.47273 * 305.00271 * 20 17 15 33 33 H 1.09000 * 109.46882 * 65.00544 * 20 17 15 34 34 H 1.09003 * 115.54851 * 29.41637 * 21 20 17 35 35 H 1.08993 * 117.50102 * 359.97438 * 22 21 20 36 36 H 1.09000 * 117.50084 * 145.02109 * 22 21 20 37 37 H 1.09004 * 117.49870 * 214.97964 * 23 21 20 38 38 H 1.09000 * 117.49802 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0952 1.6965 1.2124 6 1 3.0952 1.6964 -1.2126 7 6 2.0076 -1.2127 0.0005 8 1 1.4705 -2.1463 -0.0777 9 6 3.4172 -1.2147 0.1034 10 6 4.1238 -2.4257 -0.0050 11 6 5.5029 -2.4120 0.0983 12 6 6.1427 -1.1990 0.3055 13 6 5.3850 -0.0303 0.4046 14 7 6.0259 1.1887 0.6122 15 6 7.2709 1.2164 1.1275 16 8 7.8593 0.1790 1.3474 17 6 7.9319 2.5363 1.4303 18 1 7.7032 3.2478 0.6368 19 7 9.3862 2.3478 1.5146 20 6 7.4091 3.0744 2.7638 21 6 7.9846 4.4703 3.0114 22 6 8.9062 4.6505 4.2194 23 6 7.4896 5.2302 4.2436 24 7 4.0705 -0.0651 0.2982 25 1 -0.4850 -0.8368 -0.0733 26 1 3.5963 -3.3543 -0.1660 27 1 6.0703 -3.3275 0.0183 28 1 7.2186 -1.1587 0.3896 29 1 5.5761 2.0177 0.3859 30 1 9.6242 1.6920 2.2436 31 1 9.7649 2.0544 0.6267 32 1 6.3211 3.1305 2.7316 33 1 7.7149 2.4072 3.5697 34 1 8.2076 5.0522 2.1171 35 1 9.1021 3.7747 4.8380 36 1 9.7350 5.3513 4.1200 37 1 7.3871 6.3122 4.1601 38 1 6.7536 4.7358 4.8777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119378280.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = 10.429374 kcal Electronic energy + Delta-G solvation = -20898.857006 eV Core-core repulsion = 17741.295145 eV Total energy + Delta-G solvation = -3157.561860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43878 -38.50644 -37.57976 -34.80361 -34.42839 -33.53054 -31.16575 -29.83360 -28.89903 -25.59759 -24.62774 -22.44492 -21.94409 -21.61251 -20.56936 -19.88317 -18.42811 -17.49107 -16.83089 -16.24886 -15.65025 -15.23222 -14.91439 -14.81502 -14.27237 -14.14765 -13.66423 -13.44841 -12.97630 -12.86817 -12.56395 -12.29234 -11.94916 -11.70266 -11.60052 -11.49656 -11.19631 -10.89009 -10.39099 -10.35254 -10.10369 -9.97581 -9.76437 -9.62002 -9.23148 -8.77170 -8.59330 -7.79685 -7.54180 -7.26848 -4.82984 2.10987 2.59022 2.90396 3.24149 3.48877 3.59261 3.73810 3.92806 4.31414 4.34608 4.46158 4.59526 4.75374 4.83924 4.87657 5.03162 5.13715 5.46075 5.47668 5.55151 5.70503 5.75814 5.81222 5.82368 6.02206 6.02984 6.19939 6.39426 6.46304 6.50004 6.82778 7.06867 7.13638 7.23831 7.38836 7.50178 7.56261 7.71028 8.05688 8.21283 8.36050 8.59939 9.34900 9.95249 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.005376 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.273439 B = 5207.349915 C = 6375.103449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.043 3.957 3 Si 1.154 2.846 4 H -0.331 1.331 5 H -0.280 1.280 6 H -0.295 1.295 7 C -0.476 4.476 8 H 0.084 0.916 9 C 0.272 3.728 10 C -0.275 4.275 11 C -0.037 4.037 12 C -0.315 4.315 13 C 0.381 3.619 14 N -0.649 5.649 15 C 0.480 3.520 16 O -0.520 6.520 17 C 0.083 3.917 18 H 0.106 0.894 19 N -0.813 5.813 20 C -0.080 4.080 21 C -0.129 4.129 22 C -0.172 4.172 23 C -0.190 4.190 24 N -0.598 5.598 25 H 0.283 0.717 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.144 0.856 29 H 0.407 0.593 30 H 0.350 0.650 31 H 0.344 0.656 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.690 8.660 3.721 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.178 4.178 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.208 1.208 6 H -0.223 1.223 7 C -0.508 4.508 8 H 0.102 0.898 9 C 0.148 3.852 10 C -0.298 4.298 11 C -0.061 4.061 12 C -0.339 4.339 13 C 0.151 3.849 14 N -0.294 5.294 15 C 0.265 3.735 16 O -0.395 6.395 17 C -0.034 4.034 18 H 0.124 0.876 19 N -0.341 5.341 20 C -0.118 4.118 21 C -0.147 4.147 22 C -0.209 4.209 23 C -0.227 4.227 24 N -0.324 5.324 25 H 0.095 0.905 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.161 0.839 29 H 0.242 0.758 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.399 10.980 4.206 17.827 hybrid contribution -0.089 -3.420 -0.523 3.460 sum 13.311 7.560 3.684 15.745 Atomic orbital electron populations 1.70644 1.08168 1.32850 1.30965 1.27789 0.95328 1.06187 0.88527 0.81857 0.70786 0.69648 0.78763 1.26506 1.20750 1.22321 1.20741 0.90366 0.96396 1.43282 0.89841 1.18277 0.93449 0.85938 0.87510 1.21624 0.94013 0.98391 1.15751 1.20959 0.94180 0.96541 0.94396 1.21714 1.01266 0.91507 1.19434 1.18196 0.88675 0.84496 0.93575 1.43437 1.16013 1.08594 1.61324 1.22205 0.81338 0.93310 0.76669 1.90586 1.63451 1.34021 1.51477 1.21583 0.89143 0.92588 1.00043 0.87638 1.59146 1.07550 1.55726 1.11708 1.21159 1.00361 0.95008 0.95238 1.22029 1.03265 0.96354 0.93064 1.22943 0.93303 1.03017 1.01629 1.23043 0.97877 0.99844 1.01943 1.66001 1.06772 1.29735 1.29853 0.90537 0.87668 0.87630 0.83911 0.75764 0.83607 0.84343 0.90268 0.91023 0.87529 0.89106 0.89123 0.88958 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.80 13.65 55.55 0.76 -21.04 16 2 C 0.04 1.16 5.52 -17.34 -0.10 1.06 16 3 Si 1.15 27.51 25.61 -169.99 -4.35 23.15 16 4 H -0.33 -7.81 7.11 56.52 0.40 -7.41 16 5 H -0.28 -6.52 6.61 56.52 0.37 -6.15 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.48 -12.96 9.57 -37.74 -0.36 -13.32 16 8 H 0.08 2.26 8.05 -52.49 -0.42 1.84 16 9 C 0.27 7.16 6.40 -85.00 -0.54 6.61 16 10 C -0.28 -6.59 9.83 -38.66 -0.38 -6.97 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.31 -7.06 8.90 -38.89 -0.35 -7.40 16 13 C 0.38 8.66 7.51 -154.97 -1.16 7.50 16 14 N -0.65 -11.66 5.41 -11.41 -0.06 -11.72 16 15 C 0.48 7.51 6.96 -10.99 -0.08 7.43 16 16 O -0.52 -9.57 12.91 5.56 0.07 -9.49 16 17 C 0.08 0.91 3.11 -68.87 -0.21 0.70 16 18 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 19 N -0.81 -8.19 8.71 -5.66 -0.05 -8.24 16 20 C -0.08 -0.85 5.12 -26.73 -0.14 -0.99 16 21 C -0.13 -1.20 5.47 -90.62 -0.50 -1.70 16 22 C -0.17 -1.52 10.18 -26.69 -0.27 -1.79 16 23 C -0.19 -1.68 10.25 -26.69 -0.27 -1.96 16 24 N -0.60 -15.05 4.53 -10.26 -0.05 -15.09 16 25 H 0.28 7.35 8.72 -40.82 -0.36 6.99 16 26 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 27 H 0.11 1.98 8.06 -52.48 -0.42 1.55 16 28 H 0.14 3.12 5.16 -52.93 -0.27 2.84 16 29 H 0.41 6.41 8.82 -40.82 -0.36 6.05 16 30 H 0.35 3.74 8.58 -39.29 -0.34 3.40 16 31 H 0.34 3.27 9.06 -39.29 -0.36 2.92 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 34 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -30.04 319.84 -8.75 -38.79 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.13 Total: 10.84 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -4.76 Total: -12.02 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.60 Total: -56.09 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 27.51 SS G_CDS: -4.35 Total: 23.15 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.04 -8.75 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119378280.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.222 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds