Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47606 * 120.00103 * 3 2 1 6 6 H 1.48506 * 109.47130 * 240.00210 * 3 2 1 7 7 C 1.40029 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99552 * 4.82441 * 7 2 1 9 9 C 1.41330 * 119.99910 * 184.82186 * 7 2 1 10 10 C 1.40621 * 119.78748 * 185.13158 * 9 7 2 11 11 C 1.38302 * 119.12810 * 180.02562 * 10 9 7 12 12 C 1.38698 * 118.67154 * 359.97438 * 11 10 9 13 13 C 1.39630 * 119.49318 * 0.02562 * 12 11 10 14 14 N 1.39271 * 119.56860 * 180.02562 * 13 12 11 15 15 C 1.34771 * 120.00511 * 339.10164 * 14 13 12 16 16 O 1.21278 * 119.99494 * 3.72448 * 15 14 13 17 17 C 1.50697 * 120.00501 * 183.71797 * 15 14 13 18 18 H 1.08999 * 109.47231 * 320.00352 * 17 15 14 19 19 N 1.46893 * 109.47421 * 200.00124 * 17 15 14 20 20 C 1.53005 * 109.46848 * 79.99916 * 17 15 14 21 21 C 1.53000 * 109.47169 * 185.00150 * 20 17 15 22 22 C 1.53002 * 117.49867 * 243.75302 * 21 20 17 23 23 C 1.52997 * 117.49912 * 175.09008 * 21 20 17 24 24 N 1.31925 * 120.85501 * 359.72050 * 13 12 11 25 25 H 0.96996 * 119.99946 * 174.99566 * 1 2 3 26 26 H 1.08002 * 120.43205 * 359.97438 * 10 9 7 27 27 H 1.08004 * 120.66389 * 180.02562 * 11 10 9 28 28 H 1.08002 * 120.25176 * 180.02562 * 12 11 10 29 29 H 0.97000 * 119.99794 * 159.10492 * 14 13 12 30 30 H 1.00898 * 111.00271 * 300.00328 * 19 17 15 31 31 H 1.00897 * 111.00142 * 63.96000 * 19 17 15 32 32 H 1.09000 * 109.47273 * 305.00271 * 20 17 15 33 33 H 1.09000 * 109.46882 * 65.00544 * 20 17 15 34 34 H 1.09003 * 115.54851 * 29.41637 * 21 20 17 35 35 H 1.08993 * 117.50102 * 359.97438 * 22 21 20 36 36 H 1.09000 * 117.50084 * 145.02109 * 22 21 20 37 37 H 1.09004 * 117.49870 * 214.97964 * 23 21 20 38 38 H 1.09000 * 117.49802 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0952 1.6965 1.2124 6 1 3.0952 1.6964 -1.2126 7 6 2.0076 -1.2127 0.0005 8 1 1.4705 -2.1463 -0.0777 9 6 3.4172 -1.2147 0.1034 10 6 4.1238 -2.4257 -0.0050 11 6 5.5029 -2.4120 0.0983 12 6 6.1427 -1.1990 0.3055 13 6 5.3850 -0.0303 0.4046 14 7 6.0259 1.1887 0.6122 15 6 7.2709 1.2164 1.1275 16 8 7.8593 0.1790 1.3474 17 6 7.9319 2.5363 1.4303 18 1 7.7032 3.2478 0.6368 19 7 9.3862 2.3478 1.5146 20 6 7.4091 3.0744 2.7638 21 6 7.9846 4.4703 3.0114 22 6 8.9062 4.6505 4.2194 23 6 7.4896 5.2302 4.2436 24 7 4.0705 -0.0651 0.2982 25 1 -0.4850 -0.8368 -0.0733 26 1 3.5963 -3.3543 -0.1660 27 1 6.0703 -3.3275 0.0183 28 1 7.2186 -1.1587 0.3896 29 1 5.5761 2.0177 0.3859 30 1 9.6242 1.6920 2.2436 31 1 9.7649 2.0544 0.6267 32 1 6.3211 3.1305 2.7316 33 1 7.7149 2.4072 3.5697 34 1 8.2076 5.0522 2.1171 35 1 9.1021 3.7747 4.8380 36 1 9.7350 5.3513 4.1200 37 1 7.3871 6.3122 4.1601 38 1 6.7536 4.7358 4.8777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119378280.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = -9.137606 kcal Electronic energy + Delta-G solvation = -20899.705494 eV Core-core repulsion = 17741.295145 eV Total energy + Delta-G solvation = -3158.410348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.85969 -40.12580 -38.46476 -36.37890 -35.49198 -35.30648 -33.02437 -31.49730 -29.87048 -27.42813 -25.90123 -23.70188 -23.18372 -23.08135 -21.39707 -21.29595 -20.31554 -18.95216 -18.23264 -17.21388 -17.00108 -16.59879 -16.52050 -15.99203 -15.76944 -15.46229 -15.02730 -14.75031 -14.66287 -14.32602 -14.23071 -13.76435 -13.44709 -13.01388 -12.77286 -12.52265 -12.26796 -12.23089 -12.18562 -11.75576 -11.67746 -11.17246 -11.11849 -10.93524 -10.69333 -10.45761 -9.81254 -9.72349 -9.39030 -9.20878 -6.85737 0.46290 0.69771 1.44913 1.54681 1.71866 1.83974 2.07646 2.44778 2.64068 3.02404 3.33638 3.51123 3.59205 3.84993 4.01161 4.06144 4.14951 4.26008 4.36168 4.39423 4.61856 4.65403 4.69113 4.76799 4.88297 4.91273 4.94777 5.15498 5.31513 5.34890 5.36973 5.39461 5.47613 5.68996 5.76043 5.89687 5.98152 6.26875 6.38165 6.41721 6.61856 6.97424 7.46308 7.92268 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.005376 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.273439 B = 5207.349915 C = 6375.103449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.014 3.986 3 Si 1.186 2.814 4 H -0.328 1.328 5 H -0.273 1.273 6 H -0.291 1.291 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.257 3.743 10 C -0.293 4.293 11 C -0.030 4.030 12 C -0.312 4.312 13 C 0.371 3.629 14 N -0.648 5.648 15 C 0.482 3.518 16 O -0.545 6.545 17 C 0.097 3.903 18 H 0.132 0.868 19 N -0.803 5.803 20 C -0.078 4.078 21 C -0.130 4.130 22 C -0.171 4.171 23 C -0.191 4.191 24 N -0.610 5.610 25 H 0.281 0.719 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.155 0.845 29 H 0.418 0.582 30 H 0.348 0.652 31 H 0.350 0.650 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.319 10.099 3.885 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.203 4.203 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.201 1.201 6 H -0.219 1.219 7 C -0.542 4.542 8 H 0.085 0.915 9 C 0.132 3.868 10 C -0.316 4.316 11 C -0.054 4.054 12 C -0.336 4.336 13 C 0.140 3.860 14 N -0.294 5.294 15 C 0.269 3.731 16 O -0.422 6.422 17 C -0.019 4.019 18 H 0.150 0.850 19 N -0.331 5.331 20 C -0.116 4.116 21 C -0.148 4.148 22 C -0.208 4.208 23 C -0.228 4.228 24 N -0.336 5.336 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.160 0.840 28 H 0.172 0.828 29 H 0.255 0.745 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.059 12.435 4.374 20.776 hybrid contribution -0.660 -3.934 -0.529 4.024 sum 15.399 8.501 3.846 18.005 Atomic orbital electron populations 1.70671 1.08492 1.32708 1.33257 1.28637 0.95586 1.08084 0.87972 0.81472 0.70169 0.67597 0.78999 1.26184 1.20083 1.21894 1.20741 0.91313 0.96058 1.46075 0.91463 1.18451 0.93402 0.87339 0.87589 1.21779 0.95078 0.98075 1.16629 1.21368 0.93553 0.98019 0.92428 1.22091 1.01935 0.91709 1.17879 1.18601 0.88148 0.86630 0.92637 1.43588 1.16674 1.07485 1.61651 1.23250 0.80130 0.94777 0.74941 1.90549 1.63819 1.35610 1.52248 1.21684 0.88992 0.90218 1.01025 0.85003 1.59175 1.06496 1.55415 1.12018 1.21132 1.00163 0.95750 0.94531 1.21990 1.03608 0.95543 0.93664 1.22987 0.93613 1.03078 1.01166 1.23100 0.97778 1.00445 1.01468 1.66011 1.08020 1.29483 1.30078 0.90871 0.86856 0.83977 0.82794 0.74467 0.83822 0.83660 0.90747 0.92047 0.86549 0.89529 0.88181 0.87855 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.05 13.65 21.84 0.30 -45.75 16 2 C 0.01 0.75 5.52 85.29 0.47 1.22 16 3 Si 1.19 55.54 25.61 68.60 1.76 57.30 16 4 H -0.33 -15.04 7.11 99.48 0.71 -14.33 16 5 H -0.27 -12.36 6.61 99.48 0.66 -11.70 16 6 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 7 C -0.51 -28.52 9.57 23.47 0.22 -28.30 16 8 H 0.07 3.83 8.05 -2.91 -0.02 3.81 16 9 C 0.26 13.56 6.40 40.21 0.26 13.82 16 10 C -0.29 -13.85 9.83 22.87 0.22 -13.62 16 11 C -0.03 -1.23 10.15 22.39 0.23 -1.00 16 12 C -0.31 -13.28 8.90 22.72 0.20 -13.07 16 13 C 0.37 16.20 7.51 133.23 1.00 17.20 16 14 N -0.65 -21.74 5.41 -308.39 -1.67 -23.41 16 15 C 0.48 13.81 6.96 87.66 0.61 14.42 16 16 O -0.55 -18.73 12.91 -3.02 -0.04 -18.77 16 17 C 0.10 1.84 3.11 44.17 0.14 1.98 16 18 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 19 N -0.80 -13.70 8.71 -171.81 -1.50 -15.19 16 20 C -0.08 -1.46 5.12 30.60 0.16 -1.31 16 21 C -0.13 -2.05 5.47 -10.79 -0.06 -2.11 16 22 C -0.17 -2.60 10.18 30.62 0.31 -2.29 16 23 C -0.19 -2.93 10.25 30.62 0.31 -2.61 16 24 N -0.61 -30.15 4.53 -186.36 -0.85 -31.00 16 25 H 0.28 15.14 8.72 -92.71 -0.81 14.33 16 26 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 27 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 28 H 0.16 6.29 5.16 -9.89 -0.05 6.24 16 29 H 0.42 12.08 8.82 -92.71 -0.82 11.26 16 30 H 0.35 6.52 8.58 -89.70 -0.77 5.75 16 31 H 0.35 5.52 9.06 -89.70 -0.81 4.71 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.29 7.88 -2.39 -0.02 1.27 16 34 H 0.12 1.64 8.08 -2.39 -0.02 1.62 16 35 H 0.09 1.39 8.03 -2.39 -0.02 1.37 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -64.17 319.84 0.67 -63.50 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -1.41 Total: 29.01 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.08 Total: -15.68 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -3.71 Total: -115.36 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.04 Total: -18.77 kcal Atomic # 14 Polarization: 55.54 SS G_CDS: 1.76 Total: 57.30 kcal Total: -64.17 0.67 -63.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119378280.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.364 kcal (2) G-P(sol) polarization free energy of solvation -64.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds