Wall clock time and date at job start Mon Mar 30 2020 02:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47015 * 89.99505 * 3 2 1 5 5 H 1.48493 * 109.47206 * 210.00199 * 3 2 1 6 6 H 1.48502 * 109.46769 * 330.00085 * 3 2 1 7 7 C 1.40027 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00416 * 16.06464 * 7 2 1 9 9 C 1.41338 * 119.99897 * 196.07078 * 7 2 1 10 10 C 1.40623 * 119.78957 * 188.92755 * 9 7 2 11 11 C 1.38305 * 119.12634 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.67179 * 359.97438 * 11 10 9 13 13 C 1.39628 * 119.49770 * 0.02562 * 12 11 10 14 14 N 1.39274 * 119.57502 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00040 * 18.84671 * 14 13 12 16 16 O 1.21275 * 119.99616 * 5.57738 * 15 14 13 17 17 C 1.50694 * 120.00157 * 185.58418 * 15 14 13 18 18 H 1.09005 * 109.47443 * 39.99326 * 17 15 14 19 19 N 1.46894 * 109.47453 * 159.99536 * 17 15 14 20 20 C 1.53005 * 109.46793 * 279.99869 * 17 15 14 21 21 C 1.53000 * 109.47168 * 175.00325 * 20 17 15 22 22 C 1.53001 * 117.49351 * 243.74624 * 21 20 17 23 23 C 1.52996 * 117.49956 * 175.08842 * 21 20 17 24 24 N 1.31930 * 120.85343 * 359.72107 * 13 12 11 25 25 H 0.96997 * 119.99733 * 174.92435 * 1 2 3 26 26 H 1.07997 * 120.43425 * 359.97438 * 10 9 7 27 27 H 1.07997 * 120.65873 * 180.02562 * 11 10 9 28 28 H 1.08004 * 120.25288 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00104 * 198.84519 * 14 13 12 30 30 H 1.00897 * 111.00537 * 296.04790 * 19 17 15 31 31 H 1.00904 * 110.99988 * 59.99602 * 19 17 15 32 32 H 1.09004 * 109.46960 * 294.99873 * 20 17 15 33 33 H 1.09002 * 109.47447 * 54.99790 * 20 17 15 34 34 H 1.08999 * 115.55081 * 29.41142 * 21 20 17 35 35 H 1.08998 * 117.50455 * 359.97438 * 22 21 20 36 36 H 1.09009 * 117.49582 * 145.02405 * 22 21 20 37 37 H 1.09000 * 117.49834 * 214.98022 * 23 21 20 38 38 H 1.09003 * 117.49861 * 359.96550 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0464 1.4001 5 1 3.5390 1.4401 -0.7000 6 1 1.4389 2.6526 -0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 1.4992 -2.1296 -0.2598 9 6 3.3795 -1.2367 0.3383 10 6 4.1235 -2.4161 0.1564 11 6 5.4652 -2.4242 0.4920 12 6 6.0316 -1.2636 0.9977 13 6 5.2400 -0.1243 1.1551 14 7 5.8070 1.0419 1.6632 15 6 7.1449 1.2043 1.6449 16 8 7.8478 0.3826 1.0958 17 6 7.7672 2.4066 2.3067 18 1 7.2512 2.6129 3.2445 19 7 9.1856 2.1372 2.5774 20 6 7.6458 3.6184 1.3806 21 6 8.1643 4.8647 2.1008 22 6 7.1633 5.9881 2.3779 23 6 8.2346 6.1659 1.2991 24 7 3.9629 -0.1366 0.8240 25 1 -0.4849 -0.8367 -0.0743 26 1 3.6533 -3.3038 -0.2401 27 1 6.0600 -3.3162 0.3621 28 1 7.0769 -1.2415 1.2685 29 1 5.2391 1.7373 2.0304 30 1 9.2907 1.3816 3.2378 31 1 9.6862 1.9428 1.7231 32 1 8.2353 3.4477 0.4797 33 1 6.6004 3.7645 1.1084 34 1 8.9419 4.6888 2.8440 35 1 6.1355 5.8396 2.0467 36 1 7.2827 6.5517 3.3033 37 1 9.0584 6.8463 1.5152 38 1 7.9120 6.1340 0.2584 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119378281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:49 Heat of formation + Delta-G solvation = 7.827920 kcal Electronic energy + Delta-G solvation = -20900.272757 eV Core-core repulsion = 17742.598090 eV Total energy + Delta-G solvation = -3157.674668 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41645 -38.47871 -37.58569 -34.80581 -34.43235 -33.53122 -31.12304 -29.81323 -28.85401 -25.58400 -24.67605 -22.49336 -21.90646 -21.60405 -20.46226 -19.82773 -18.41909 -17.48844 -16.90360 -16.39100 -15.26882 -15.16005 -14.96132 -14.86153 -14.28807 -14.15901 -13.79707 -13.63728 -13.08427 -12.63877 -12.29109 -12.25153 -11.95451 -11.78847 -11.60707 -11.54034 -11.21122 -10.92355 -10.39150 -10.36247 -10.06096 -10.02458 -9.86716 -9.64999 -9.12863 -8.80169 -8.55373 -7.96289 -7.46874 -7.31752 -4.80282 2.11482 2.62400 2.94100 3.24211 3.43287 3.56465 3.68664 3.85932 4.28913 4.29239 4.51269 4.56670 4.72655 4.80072 4.88795 5.02656 5.11604 5.49713 5.50420 5.52175 5.64678 5.77813 5.81007 5.83499 6.00068 6.04233 6.25288 6.41727 6.47907 6.50658 6.80668 7.08791 7.15464 7.21861 7.39849 7.52549 7.55700 7.73382 8.06684 8.22802 8.37417 8.61378 9.39478 9.93434 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018039 B = 0.005654 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.850700 B = 4951.190657 C = 6328.248910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.049 3.951 3 Si 1.142 2.858 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.326 1.326 7 C -0.481 4.481 8 H 0.084 0.916 9 C 0.274 3.726 10 C -0.276 4.276 11 C -0.037 4.037 12 C -0.311 4.311 13 C 0.380 3.620 14 N -0.651 5.651 15 C 0.480 3.520 16 O -0.520 6.520 17 C 0.082 3.918 18 H 0.107 0.893 19 N -0.816 5.816 20 C -0.079 4.079 21 C -0.138 4.138 22 C -0.186 4.186 23 C -0.184 4.184 24 N -0.594 5.594 25 H 0.285 0.715 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.407 0.593 30 H 0.345 0.655 31 H 0.351 0.649 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.881 8.835 4.892 16.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.173 4.173 3 Si 0.976 3.024 4 H -0.214 1.214 5 H -0.208 1.208 6 H -0.258 1.258 7 C -0.513 4.513 8 H 0.102 0.898 9 C 0.150 3.850 10 C -0.299 4.299 11 C -0.062 4.062 12 C -0.336 4.336 13 C 0.148 3.852 14 N -0.295 5.295 15 C 0.265 3.735 16 O -0.395 6.395 17 C -0.034 4.034 18 H 0.125 0.875 19 N -0.345 5.345 20 C -0.117 4.117 21 C -0.156 4.156 22 C -0.223 4.223 23 C -0.221 4.221 24 N -0.319 5.319 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.154 0.846 29 H 0.243 0.757 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.647 11.265 4.970 17.651 hybrid contribution -0.131 -3.335 -0.422 3.364 sum 12.517 7.929 4.549 15.499 Atomic orbital electron populations 1.70612 1.08259 1.33076 1.30450 1.27652 0.95220 1.05934 0.88473 0.82145 0.72764 0.70115 0.77417 1.21433 1.20808 1.25818 1.20675 0.93213 0.97058 1.40355 0.89789 1.18192 0.92938 0.86049 0.87850 1.21624 0.94669 0.99928 1.13668 1.20913 0.94392 0.96299 0.94550 1.21474 1.01670 0.92991 1.17466 1.18160 0.89769 0.84694 0.92559 1.43453 1.07463 1.19325 1.59296 1.22153 0.81971 0.89036 0.80355 1.90626 1.61575 1.44183 1.43090 1.21551 0.90499 0.91756 0.99638 0.87471 1.59163 1.07702 1.49396 1.18191 1.21155 1.01761 0.91443 0.97375 1.22229 1.02156 0.88549 1.02649 1.23106 0.95810 1.03075 1.00304 1.22964 1.01651 1.00351 0.97162 1.66196 1.10278 1.30187 1.25266 0.90396 0.87688 0.87693 0.84647 0.75715 0.84195 0.83533 0.90735 0.90731 0.86338 0.88713 0.88965 0.88996 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.60 13.65 55.55 0.76 -20.84 16 2 C 0.05 1.33 5.51 -17.34 -0.10 1.23 16 3 Si 1.14 27.34 25.93 -169.99 -4.41 22.93 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.90 6.55 56.52 0.37 -6.53 16 6 H -0.33 -7.65 7.11 56.52 0.40 -7.25 16 7 C -0.48 -13.07 9.51 -37.73 -0.36 -13.42 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.27 7.20 6.27 -84.99 -0.53 6.67 16 10 C -0.28 -6.64 9.83 -38.66 -0.38 -7.02 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.22 16 12 C -0.31 -7.02 8.83 -38.90 -0.34 -7.36 16 13 C 0.38 8.66 7.51 -154.97 -1.16 7.49 16 14 N -0.65 -11.72 5.41 -11.40 -0.06 -11.78 16 15 C 0.48 7.57 6.91 -10.99 -0.08 7.50 16 16 O -0.52 -9.69 13.05 5.56 0.07 -9.62 16 17 C 0.08 0.91 3.14 -68.87 -0.22 0.69 16 18 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 19 N -0.82 -8.22 8.42 -5.66 -0.05 -8.27 16 20 C -0.08 -0.84 5.12 -26.73 -0.14 -0.97 16 21 C -0.14 -1.27 5.61 -90.62 -0.51 -1.78 16 22 C -0.19 -1.62 10.18 -26.69 -0.27 -1.90 16 23 C -0.18 -1.60 10.25 -26.70 -0.27 -1.88 16 24 N -0.59 -15.00 5.06 -10.25 -0.05 -15.05 16 25 H 0.28 7.34 8.73 -40.82 -0.36 6.98 16 26 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 27 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.14 2.96 5.33 -52.50 -0.28 2.68 16 29 H 0.41 6.44 8.83 -40.82 -0.36 6.08 16 30 H 0.35 3.32 9.06 -39.29 -0.36 2.96 16 31 H 0.35 3.72 8.58 -39.29 -0.34 3.38 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.80 7.88 -51.93 -0.41 0.39 16 34 H 0.12 1.12 7.69 -51.93 -0.40 0.72 16 35 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 36 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 320.12 15.07 4.82 4.82 Total: -1.00 -29.94 320.12 -8.80 -38.74 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.12 Total: 11.04 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -4.76 Total: -11.97 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.60 Total: -55.94 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 27.34 SS G_CDS: -4.41 Total: 22.93 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.94 -8.80 -38.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119378281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.565 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds