Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47015 * 89.99505 * 3 2 1 5 5 H 1.48493 * 109.47206 * 210.00199 * 3 2 1 6 6 H 1.48502 * 109.46769 * 330.00085 * 3 2 1 7 7 C 1.40027 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00416 * 16.06464 * 7 2 1 9 9 C 1.41338 * 119.99897 * 196.07078 * 7 2 1 10 10 C 1.40623 * 119.78957 * 188.92755 * 9 7 2 11 11 C 1.38305 * 119.12634 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.67179 * 359.97438 * 11 10 9 13 13 C 1.39628 * 119.49770 * 0.02562 * 12 11 10 14 14 N 1.39274 * 119.57502 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00040 * 18.84671 * 14 13 12 16 16 O 1.21275 * 119.99616 * 5.57738 * 15 14 13 17 17 C 1.50694 * 120.00157 * 185.58418 * 15 14 13 18 18 H 1.09005 * 109.47443 * 39.99326 * 17 15 14 19 19 N 1.46894 * 109.47453 * 159.99536 * 17 15 14 20 20 C 1.53005 * 109.46793 * 279.99869 * 17 15 14 21 21 C 1.53000 * 109.47168 * 175.00325 * 20 17 15 22 22 C 1.53001 * 117.49351 * 243.74624 * 21 20 17 23 23 C 1.52996 * 117.49956 * 175.08842 * 21 20 17 24 24 N 1.31930 * 120.85343 * 359.72107 * 13 12 11 25 25 H 0.96997 * 119.99733 * 174.92435 * 1 2 3 26 26 H 1.07997 * 120.43425 * 359.97438 * 10 9 7 27 27 H 1.07997 * 120.65873 * 180.02562 * 11 10 9 28 28 H 1.08004 * 120.25288 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00104 * 198.84519 * 14 13 12 30 30 H 1.00897 * 111.00537 * 296.04790 * 19 17 15 31 31 H 1.00904 * 110.99988 * 59.99602 * 19 17 15 32 32 H 1.09004 * 109.46960 * 294.99873 * 20 17 15 33 33 H 1.09002 * 109.47447 * 54.99790 * 20 17 15 34 34 H 1.08999 * 115.55081 * 29.41142 * 21 20 17 35 35 H 1.08998 * 117.50455 * 359.97438 * 22 21 20 36 36 H 1.09009 * 117.49582 * 145.02405 * 22 21 20 37 37 H 1.09000 * 117.49834 * 214.98022 * 23 21 20 38 38 H 1.09003 * 117.49861 * 359.96550 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0464 1.4001 5 1 3.5390 1.4401 -0.7000 6 1 1.4389 2.6526 -0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 1.4992 -2.1296 -0.2598 9 6 3.3795 -1.2367 0.3383 10 6 4.1235 -2.4161 0.1564 11 6 5.4652 -2.4242 0.4920 12 6 6.0316 -1.2636 0.9977 13 6 5.2400 -0.1243 1.1551 14 7 5.8070 1.0419 1.6632 15 6 7.1449 1.2043 1.6449 16 8 7.8478 0.3826 1.0958 17 6 7.7672 2.4066 2.3067 18 1 7.2512 2.6129 3.2445 19 7 9.1856 2.1372 2.5774 20 6 7.6458 3.6184 1.3806 21 6 8.1643 4.8647 2.1008 22 6 7.1633 5.9881 2.3779 23 6 8.2346 6.1659 1.2991 24 7 3.9629 -0.1366 0.8240 25 1 -0.4849 -0.8367 -0.0743 26 1 3.6533 -3.3038 -0.2401 27 1 6.0600 -3.3162 0.3621 28 1 7.0769 -1.2415 1.2685 29 1 5.2391 1.7373 2.0304 30 1 9.2907 1.3816 3.2378 31 1 9.6862 1.9428 1.7231 32 1 8.2353 3.4477 0.4797 33 1 6.6004 3.7645 1.1084 34 1 8.9419 4.6888 2.8440 35 1 6.1355 5.8396 2.0467 36 1 7.2827 6.5517 3.3033 37 1 9.0584 6.8463 1.5152 38 1 7.9120 6.1340 0.2584 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119378281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = -11.584589 kcal Electronic energy + Delta-G solvation = -20901.114547 eV Core-core repulsion = 17742.598090 eV Total energy + Delta-G solvation = -3158.516457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.84111 -40.10015 -38.46873 -36.36895 -35.49682 -35.33128 -32.98546 -31.48144 -29.82217 -27.41289 -25.94274 -23.67106 -23.23336 -23.06313 -21.39323 -21.15330 -20.30251 -18.95104 -18.21344 -17.44177 -16.95956 -16.57462 -16.24784 -15.98829 -15.82123 -15.44632 -15.03868 -14.88776 -14.70035 -14.34234 -14.24743 -13.76209 -13.15738 -12.99593 -12.80531 -12.64378 -12.26564 -12.21909 -12.18803 -11.88365 -11.61750 -11.21497 -11.06427 -10.91619 -10.75011 -10.42709 -9.88851 -9.83760 -9.34606 -9.24490 -6.82679 0.46032 0.73479 1.45391 1.49094 1.69450 1.83849 1.98753 2.38096 2.60709 2.98685 3.30533 3.54450 3.64862 3.83356 4.02766 4.07472 4.08344 4.26038 4.35194 4.39985 4.63229 4.66560 4.70508 4.76057 4.86651 4.91223 4.98630 5.14185 5.33132 5.35840 5.36325 5.40974 5.53120 5.69192 5.76998 5.91411 5.96507 6.26680 6.39093 6.40202 6.62741 6.97790 7.50563 7.90851 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018039 B = 0.005654 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.850700 B = 4951.190657 C = 6328.248910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.022 3.978 3 Si 1.174 2.826 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.320 1.320 7 C -0.514 4.514 8 H 0.068 0.932 9 C 0.258 3.742 10 C -0.295 4.295 11 C -0.031 4.031 12 C -0.310 4.310 13 C 0.370 3.630 14 N -0.649 5.649 15 C 0.482 3.518 16 O -0.547 6.547 17 C 0.097 3.903 18 H 0.130 0.870 19 N -0.805 5.805 20 C -0.078 4.078 21 C -0.138 4.138 22 C -0.185 4.185 23 C -0.185 4.185 24 N -0.607 5.607 25 H 0.282 0.718 26 H 0.113 0.887 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.418 0.582 30 H 0.351 0.649 31 H 0.350 0.650 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.128 10.127 6.004 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.196 4.196 3 Si 1.003 2.997 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.252 1.252 7 C -0.546 4.546 8 H 0.087 0.913 9 C 0.133 3.867 10 C -0.317 4.317 11 C -0.055 4.055 12 C -0.334 4.334 13 C 0.138 3.862 14 N -0.295 5.295 15 C 0.269 3.731 16 O -0.423 6.423 17 C -0.019 4.019 18 H 0.147 0.853 19 N -0.334 5.334 20 C -0.116 4.116 21 C -0.156 4.156 22 C -0.222 4.222 23 C -0.222 4.222 24 N -0.332 5.332 25 H 0.093 0.907 26 H 0.131 0.869 27 H 0.159 0.841 28 H 0.165 0.835 29 H 0.256 0.744 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.139 0.861 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.913 12.574 6.114 20.442 hybrid contribution -0.591 -3.791 -0.747 3.909 sum 14.321 8.783 5.367 17.636 Atomic orbital electron populations 1.70635 1.08516 1.32968 1.32512 1.28437 0.95465 1.07687 0.87964 0.81748 0.71413 0.68339 0.78162 1.19564 1.22095 1.25231 1.20676 0.94218 0.96837 1.42876 0.91333 1.18379 0.92987 0.87367 0.87970 1.21785 0.95640 0.99710 1.14582 1.21319 0.93820 0.97557 0.92833 1.21838 1.02183 0.93052 1.16320 1.18564 0.89172 0.86571 0.91925 1.43595 1.08475 1.18292 1.59144 1.23199 0.80783 0.89829 0.79269 1.90594 1.61884 1.45631 1.44206 1.21630 0.90664 0.89579 1.00052 0.85256 1.59193 1.06630 1.49479 1.18098 1.21139 1.01637 0.91718 0.97080 1.22118 1.02517 0.88095 1.02834 1.23175 0.95607 1.02640 1.00751 1.23036 1.02056 1.00084 0.97065 1.66195 1.11506 1.29990 1.25507 0.90678 0.86855 0.84072 0.83525 0.74423 0.83594 0.83655 0.91556 0.90930 0.86128 0.88925 0.87904 0.87969 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.28 13.65 21.84 0.30 -44.98 16 2 C 0.02 1.22 5.51 85.29 0.47 1.69 16 3 Si 1.17 55.22 25.93 68.60 1.78 57.00 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.29 -14.22 6.55 99.48 0.65 -13.57 16 6 H -0.32 -14.60 7.11 99.48 0.71 -13.89 16 7 C -0.51 -28.66 9.51 23.47 0.22 -28.44 16 8 H 0.07 3.89 8.06 -2.91 -0.02 3.86 16 9 C 0.26 13.65 6.27 40.21 0.25 13.90 16 10 C -0.30 -14.01 9.83 22.87 0.22 -13.79 16 11 C -0.03 -1.31 10.15 22.39 0.23 -1.08 16 12 C -0.31 -13.31 8.83 22.71 0.20 -13.11 16 13 C 0.37 16.28 7.51 133.23 1.00 17.28 16 14 N -0.65 -21.98 5.41 -308.38 -1.67 -23.65 16 15 C 0.48 14.03 6.91 87.65 0.61 14.64 16 16 O -0.55 -19.15 13.05 -3.01 -0.04 -19.19 16 17 C 0.10 1.88 3.14 44.17 0.14 2.02 16 18 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 19 N -0.81 -13.90 8.42 -171.81 -1.45 -15.35 16 20 C -0.08 -1.44 5.12 30.60 0.16 -1.29 16 21 C -0.14 -2.17 5.61 -10.79 -0.06 -2.23 16 22 C -0.18 -2.73 10.18 30.62 0.31 -2.42 16 23 C -0.19 -2.78 10.25 30.62 0.31 -2.47 16 24 N -0.61 -30.19 5.06 -186.35 -0.94 -31.14 16 25 H 0.28 15.06 8.73 -92.71 -0.81 14.25 16 26 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 27 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 28 H 0.15 6.03 5.33 -3.17 -0.02 6.01 16 29 H 0.42 12.22 8.83 -92.71 -0.82 11.40 16 30 H 0.35 5.68 9.06 -89.70 -0.81 4.86 16 31 H 0.35 6.53 8.58 -89.69 -0.77 5.76 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.39 7.88 -2.39 -0.02 1.37 16 34 H 0.12 1.89 7.69 -2.39 -0.02 1.87 16 35 H 0.09 1.42 8.03 -2.39 -0.02 1.40 16 36 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -63.78 320.12 0.66 -63.13 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -1.39 Total: 29.48 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.06 Total: -15.30 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -3.76 Total: -115.12 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.04 Total: -19.19 kcal Atomic # 14 Polarization: 55.22 SS G_CDS: 1.78 Total: 57.00 kcal Total: -63.78 0.66 -63.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119378281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.541 kcal (2) G-P(sol) polarization free energy of solvation -63.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds