Wall clock time and date at job start Mon Mar 30 2020 01:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86804 * 119.99785 * 2 1 4 4 H 1.48502 * 109.47208 * 85.52994 * 3 2 1 5 5 H 1.48497 * 109.46947 * 205.52801 * 3 2 1 6 6 H 1.48501 * 109.47071 * 325.52789 * 3 2 1 7 7 C 1.39018 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00083 * 13.86881 * 7 2 1 9 9 N 1.36913 * 120.00224 * 193.86957 * 7 2 1 10 10 C 1.34778 * 119.99607 * 47.92632 * 9 7 2 11 11 O 1.21599 * 120.00411 * 355.35008 * 10 9 7 12 12 C 1.47615 * 119.99888 * 175.34111 * 10 9 7 13 13 C 1.41671 * 126.50684 * 174.06754 * 12 10 9 14 14 C 1.34690 * 105.34125 * 179.84094 * 13 12 10 15 15 N 1.35519 * 107.71784 * 0.45746 * 14 13 12 16 16 N 1.28425 * 109.73058 * 359.65988 * 15 14 13 17 17 C 1.46994 * 123.90158 * 179.62521 * 15 14 13 18 18 C 1.53144 * 108.88553 * 342.33832 * 17 15 14 19 19 C 1.53154 * 109.59655 * 51.13586 * 18 17 15 20 20 C 1.50798 * 127.53388 * 180.19552 * 14 13 12 21 21 C 1.46499 * 120.00222 * 227.93422 * 9 7 2 22 22 C 1.53004 * 117.49603 * 2.49612 * 21 9 7 23 23 C 1.52998 * 117.49493 * 293.87674 * 21 9 7 24 24 H 0.97002 * 120.00297 * 359.97438 * 1 2 3 25 25 H 1.08003 * 127.33107 * 0.02562 * 13 12 10 26 26 H 1.09003 * 109.56926 * 102.16050 * 17 15 14 27 27 H 1.09001 * 109.57380 * 222.39554 * 17 15 14 28 28 H 1.08996 * 109.45360 * 171.17191 * 18 17 15 29 29 H 1.09002 * 109.45013 * 291.09775 * 18 17 15 30 30 H 1.09005 * 109.54415 * 50.26687 * 19 18 17 31 31 H 1.08999 * 109.54802 * 170.52462 * 19 18 17 32 32 H 1.08994 * 109.71672 * 45.12969 * 20 14 13 33 33 H 1.08998 * 109.71682 * 284.48809 * 20 14 13 34 34 H 1.08997 * 115.54968 * 148.20982 * 21 9 7 35 35 H 1.09001 * 117.49852 * 0.02562 * 22 21 9 36 36 H 1.09000 * 117.49749 * 145.02476 * 22 21 9 37 37 H 1.09003 * 117.50018 * 214.98169 * 23 21 9 38 38 H 1.09002 * 117.50065 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4007 2.1011 1.3958 5 1 3.5893 1.4148 -0.6034 6 1 1.4956 2.6236 -0.7925 7 6 2.0089 -1.2039 -0.0005 8 1 1.4926 -2.1255 -0.2251 9 7 3.3481 -1.2214 0.2837 10 6 3.8174 -0.5577 1.3588 11 8 3.0659 0.1252 2.0276 12 6 5.2439 -0.6601 1.7245 13 6 5.9060 0.0638 2.7466 14 6 7.1840 -0.3601 2.7128 15 7 7.2881 -1.2778 1.7210 16 7 6.1453 -1.4388 1.1577 17 6 8.5382 -1.9663 1.3690 18 6 9.7168 -1.1866 1.9593 19 6 9.4670 -0.9274 3.4480 20 6 8.3231 0.0847 3.5952 21 6 4.2709 -1.9611 -0.5809 22 6 3.6851 -2.6450 -1.8179 23 6 4.1341 -3.4845 -0.6202 24 1 -0.4851 0.8400 0.0004 25 1 5.4766 0.7970 3.4132 26 1 8.5267 -2.9763 1.7787 27 1 8.6361 -2.0135 0.2844 28 1 10.6318 -1.7668 1.8405 29 1 9.8203 -0.2352 1.4376 30 1 9.1933 -1.8609 3.9398 31 1 10.3711 -0.5248 3.9048 32 1 7.9927 0.1179 4.6333 33 1 8.6641 1.0726 3.2856 34 1 5.2743 -1.5436 -0.6638 35 1 2.6133 -2.5440 -1.9887 36 1 4.3032 -2.6773 -2.7152 37 1 5.0475 -4.0692 -0.7295 38 1 3.3579 -3.9363 -0.0026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125418725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:14 Heat of formation + Delta-G solvation = 89.012056 kcal Electronic energy + Delta-G solvation = -21864.127954 eV Core-core repulsion = 18709.973694 eV Total energy + Delta-G solvation = -3154.154260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.39857 -38.78391 -36.63766 -36.19059 -33.00933 -32.75735 -31.43602 -30.05986 -28.49952 -25.68895 -24.06206 -22.79239 -21.91491 -21.56275 -20.93194 -19.51390 -18.96118 -16.86692 -16.61708 -16.14446 -15.75499 -15.04931 -14.56254 -14.54929 -14.27769 -14.00632 -13.57537 -13.38491 -13.33023 -12.99782 -12.56607 -12.37879 -11.99007 -11.45051 -11.37149 -11.27948 -11.18664 -10.99164 -10.79355 -10.35211 -10.21527 -10.01158 -9.69965 -9.50358 -8.69489 -8.56741 -8.55650 -8.35405 -7.33418 -6.12594 -3.95398 2.15102 2.59542 2.68928 3.51981 3.59351 3.75590 4.20149 4.30639 4.35871 4.41584 4.46225 4.62390 4.70054 4.84240 4.99496 5.08896 5.15402 5.24477 5.35128 5.39094 5.46512 5.57037 5.61502 5.74219 5.80205 5.84730 5.86274 6.01753 6.14531 6.30136 6.32464 6.49504 6.77662 6.94183 7.03136 7.15880 7.90882 8.09900 8.41087 8.85880 8.96300 9.47496 9.89802 10.91926 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.006492 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.076196 B = 4312.012285 C = 5119.556381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.091 3.909 3 Si 0.916 3.084 4 H -0.255 1.255 5 H -0.282 1.282 6 H -0.309 1.309 7 C -0.341 4.341 8 H 0.096 0.904 9 N -0.423 5.423 10 C 0.534 3.466 11 O -0.538 6.538 12 C 0.014 3.986 13 C -0.185 4.185 14 C 0.002 3.998 15 N -0.297 5.297 16 N -0.262 5.262 17 C 0.125 3.875 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.049 4.049 21 C 0.079 3.921 22 C -0.179 4.179 23 C -0.191 4.191 24 H 0.272 0.728 25 H 0.156 0.844 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.738 -3.014 3.102 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.118 4.118 3 Si 0.747 3.253 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.239 1.239 7 C -0.467 4.467 8 H 0.114 0.886 9 N -0.142 5.142 10 C 0.322 3.678 11 O -0.419 6.419 12 C -0.147 4.147 13 C -0.213 4.213 14 C -0.122 4.122 15 N -0.086 5.086 16 N -0.096 5.096 17 C 0.005 3.995 18 C -0.173 4.173 19 C -0.163 4.163 20 C -0.087 4.087 21 C -0.027 4.027 22 C -0.217 4.217 23 C -0.230 4.230 24 H 0.082 0.918 25 H 0.174 0.826 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 21.405 -3.465 2.547 21.832 hybrid contribution 0.279 1.207 0.490 1.332 sum 21.684 -2.258 3.037 22.012 Atomic orbital electron populations 1.69697 1.06725 1.28203 1.45750 1.25381 0.94995 0.99541 0.91910 0.86211 0.78860 0.81834 0.78350 1.18028 1.20716 1.23889 1.18715 0.80716 0.95426 1.51872 0.88618 1.42965 1.06810 1.44456 1.20015 1.17054 0.84070 0.84895 0.81755 1.90604 1.56430 1.41721 1.53160 1.22490 0.95142 0.98632 0.98453 1.21313 0.91860 1.05119 1.03025 1.21131 0.97045 0.97658 0.96349 1.45768 1.07728 1.30658 1.24433 1.73728 0.91016 1.23253 1.21624 1.21972 0.79255 0.96092 1.02212 1.21912 0.97064 1.01552 0.96800 1.21675 0.98803 1.00057 0.95772 1.20277 0.91097 0.98930 0.98430 1.21994 0.94531 0.90989 0.95193 1.23191 1.02929 1.04094 0.91483 1.23126 1.02234 0.95097 1.02513 0.91773 0.82620 0.89456 0.88588 0.89119 0.90542 0.91168 0.90422 0.89384 0.89928 0.85975 0.87140 0.89734 0.89860 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -27.19 13.95 55.50 0.77 -26.41 16 2 C 0.09 2.77 4.99 -17.46 -0.09 2.69 16 3 Si 0.92 25.76 24.66 -169.99 -4.19 21.56 16 4 H -0.25 -7.43 6.37 56.52 0.36 -7.07 16 5 H -0.28 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.31 -8.37 7.11 56.52 0.40 -7.97 16 7 C -0.34 -10.06 8.31 -14.99 -0.12 -10.18 16 8 H 0.10 2.92 7.57 -52.49 -0.40 2.53 16 9 N -0.42 -11.22 2.42 -108.87 -0.26 -11.49 16 10 C 0.53 14.33 6.01 -12.43 -0.07 14.26 16 11 O -0.54 -16.09 12.41 5.28 0.07 -16.03 16 12 C 0.01 0.31 6.83 -82.69 -0.56 -0.25 16 13 C -0.19 -3.51 10.76 -39.53 -0.43 -3.94 16 14 C 0.00 0.03 6.57 -82.17 -0.54 -0.51 16 15 N -0.30 -4.48 3.74 -56.71 -0.21 -4.70 16 16 N -0.26 -5.05 8.71 33.45 0.29 -4.76 16 17 C 0.12 1.20 7.17 -3.70 -0.03 1.17 16 18 C -0.14 -0.91 5.91 -26.58 -0.16 -1.06 16 19 C -0.13 -0.88 5.98 -26.42 -0.16 -1.04 16 20 C -0.05 -0.47 6.28 -27.60 -0.17 -0.64 16 21 C 0.08 1.71 5.14 -67.93 -0.35 1.37 16 22 C -0.18 -3.48 9.81 -26.73 -0.26 -3.74 16 23 C -0.19 -3.61 10.37 -26.73 -0.28 -3.88 16 24 H 0.27 8.01 8.31 -40.82 -0.34 7.67 16 25 H 0.16 2.83 8.06 -52.48 -0.42 2.40 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 30 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.12 2.56 5.95 -51.93 -0.31 2.25 16 35 H 0.11 2.38 6.79 -51.93 -0.35 2.03 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -36.35 306.78 -7.44 -43.78 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.31 Total: -0.82 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -3.22 Total: -5.78 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.59 Total: -47.35 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.07 Total: -16.03 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -4.19 Total: 21.56 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.35 -7.44 -43.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125418725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.795 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds