Wall clock time and date at job start Mon Mar 30 2020 01:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86804 * 119.99785 * 2 1 4 4 H 1.48502 * 109.47208 * 85.52994 * 3 2 1 5 5 H 1.48497 * 109.46947 * 205.52801 * 3 2 1 6 6 H 1.48501 * 109.47071 * 325.52789 * 3 2 1 7 7 C 1.39018 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00083 * 13.86881 * 7 2 1 9 9 N 1.36913 * 120.00224 * 193.86957 * 7 2 1 10 10 C 1.34778 * 119.99607 * 47.92632 * 9 7 2 11 11 O 1.21599 * 120.00411 * 355.35008 * 10 9 7 12 12 C 1.47615 * 119.99888 * 175.34111 * 10 9 7 13 13 C 1.41671 * 126.50684 * 174.06754 * 12 10 9 14 14 C 1.34690 * 105.34125 * 179.84094 * 13 12 10 15 15 N 1.35519 * 107.71784 * 0.45746 * 14 13 12 16 16 N 1.28425 * 109.73058 * 359.65988 * 15 14 13 17 17 C 1.46994 * 123.90158 * 179.62521 * 15 14 13 18 18 C 1.53144 * 108.88553 * 342.33832 * 17 15 14 19 19 C 1.53154 * 109.59655 * 51.13586 * 18 17 15 20 20 C 1.50798 * 127.53388 * 180.19552 * 14 13 12 21 21 C 1.46499 * 120.00222 * 227.93422 * 9 7 2 22 22 C 1.53004 * 117.49603 * 2.49612 * 21 9 7 23 23 C 1.52998 * 117.49493 * 293.87674 * 21 9 7 24 24 H 0.97002 * 120.00297 * 359.97438 * 1 2 3 25 25 H 1.08003 * 127.33107 * 0.02562 * 13 12 10 26 26 H 1.09003 * 109.56926 * 102.16050 * 17 15 14 27 27 H 1.09001 * 109.57380 * 222.39554 * 17 15 14 28 28 H 1.08996 * 109.45360 * 171.17191 * 18 17 15 29 29 H 1.09002 * 109.45013 * 291.09775 * 18 17 15 30 30 H 1.09005 * 109.54415 * 50.26687 * 19 18 17 31 31 H 1.08999 * 109.54802 * 170.52462 * 19 18 17 32 32 H 1.08994 * 109.71672 * 45.12969 * 20 14 13 33 33 H 1.08998 * 109.71682 * 284.48809 * 20 14 13 34 34 H 1.08997 * 115.54968 * 148.20982 * 21 9 7 35 35 H 1.09001 * 117.49852 * 0.02562 * 22 21 9 36 36 H 1.09000 * 117.49749 * 145.02476 * 22 21 9 37 37 H 1.09003 * 117.50018 * 214.98169 * 23 21 9 38 38 H 1.09002 * 117.50065 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4007 2.1011 1.3958 5 1 3.5893 1.4148 -0.6034 6 1 1.4956 2.6236 -0.7925 7 6 2.0089 -1.2039 -0.0005 8 1 1.4926 -2.1255 -0.2251 9 7 3.3481 -1.2214 0.2837 10 6 3.8174 -0.5577 1.3588 11 8 3.0659 0.1252 2.0276 12 6 5.2439 -0.6601 1.7245 13 6 5.9060 0.0638 2.7466 14 6 7.1840 -0.3601 2.7128 15 7 7.2881 -1.2778 1.7210 16 7 6.1453 -1.4388 1.1577 17 6 8.5382 -1.9663 1.3690 18 6 9.7168 -1.1866 1.9593 19 6 9.4670 -0.9274 3.4480 20 6 8.3231 0.0847 3.5952 21 6 4.2709 -1.9611 -0.5809 22 6 3.6851 -2.6450 -1.8179 23 6 4.1341 -3.4845 -0.6202 24 1 -0.4851 0.8400 0.0004 25 1 5.4766 0.7970 3.4132 26 1 8.5267 -2.9763 1.7787 27 1 8.6361 -2.0135 0.2844 28 1 10.6318 -1.7668 1.8405 29 1 9.8203 -0.2352 1.4376 30 1 9.1933 -1.8609 3.9398 31 1 10.3711 -0.5248 3.9048 32 1 7.9927 0.1179 4.6333 33 1 8.6641 1.0726 3.2856 34 1 5.2743 -1.5436 -0.6638 35 1 2.6133 -2.5440 -1.9887 36 1 4.3032 -2.6773 -2.7152 37 1 5.0475 -4.0692 -0.7295 38 1 3.3579 -3.9363 -0.0026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125418725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:13 Heat of formation + Delta-G solvation = 63.905429 kcal Electronic energy + Delta-G solvation = -21865.216659 eV Core-core repulsion = 18709.973694 eV Total energy + Delta-G solvation = -3155.242965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.71902 -40.73068 -38.08806 -37.42954 -35.00940 -33.98047 -33.49053 -31.34451 -29.56201 -27.54693 -25.20185 -24.31566 -23.17526 -22.91536 -22.61893 -21.23158 -20.30443 -18.61395 -17.86626 -17.79248 -17.12852 -17.00156 -16.18478 -15.63057 -15.42657 -15.29367 -15.04825 -14.96586 -14.74705 -14.58777 -14.43857 -13.69041 -13.40963 -13.03441 -12.89373 -12.50255 -12.22663 -12.19707 -12.14309 -11.91877 -11.83606 -11.72948 -11.54519 -11.15690 -10.84690 -10.59906 -9.94832 -9.84653 -9.37101 -8.47192 -6.29112 0.60628 1.12711 1.25870 1.34719 1.46101 1.61980 2.28811 2.52410 2.59531 2.93028 3.21164 3.37804 3.60285 3.79784 3.83438 3.96750 4.07151 4.23229 4.29936 4.35315 4.41956 4.46373 4.56623 4.73913 4.79628 4.83348 4.89989 4.96275 5.03942 5.08298 5.17168 5.19907 5.34355 5.40891 5.43983 5.66075 5.82284 5.99585 6.65840 6.79284 7.03527 7.24683 7.78446 8.61171 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.006492 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.076196 B = 4312.012285 C = 5119.556381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.048 3.952 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.294 1.294 7 C -0.336 4.336 8 H 0.073 0.927 9 N -0.439 5.439 10 C 0.528 3.472 11 O -0.585 6.585 12 C -0.033 4.033 13 C -0.218 4.218 14 C 0.027 3.973 15 N -0.282 5.282 16 N -0.262 5.262 17 C 0.107 3.893 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.051 4.051 21 C 0.052 3.948 22 C -0.170 4.170 23 C -0.168 4.168 24 H 0.276 0.724 25 H 0.149 0.851 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.815 -3.880 2.932 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.157 4.157 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.223 1.223 7 C -0.464 4.464 8 H 0.090 0.910 9 N -0.158 5.158 10 C 0.318 3.682 11 O -0.469 6.469 12 C -0.191 4.191 13 C -0.246 4.246 14 C -0.098 4.098 15 N -0.071 5.071 16 N -0.098 5.098 17 C -0.011 4.011 18 C -0.166 4.166 19 C -0.159 4.159 20 C -0.090 4.090 21 C -0.052 4.052 22 C -0.208 4.208 23 C -0.206 4.206 24 H 0.085 0.915 25 H 0.167 0.833 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.146 0.854 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 26.502 -4.362 2.337 26.960 hybrid contribution -1.088 1.323 0.617 1.821 sum 25.413 -3.039 2.954 25.764 Atomic orbital electron populations 1.69755 1.07585 1.28854 1.48202 1.25947 0.95545 1.01836 0.92354 0.85430 0.78172 0.79783 0.77000 1.20516 1.20486 1.22267 1.18589 0.82614 0.94342 1.50809 0.90951 1.43120 1.06361 1.45275 1.21044 1.17725 0.86036 0.83411 0.81015 1.90541 1.58378 1.43571 1.54421 1.21885 0.93649 1.02189 1.01404 1.21449 0.93745 1.06203 1.03243 1.21748 0.96910 0.95520 0.95588 1.46414 1.07960 1.29636 1.23136 1.73561 0.91981 1.22487 1.21761 1.22649 0.77589 0.97130 1.03697 1.21982 0.96825 1.01697 0.96144 1.21718 0.98659 0.99250 0.96287 1.20569 0.90109 1.00571 0.97703 1.22213 0.94303 0.92390 0.96327 1.23245 1.01889 1.02997 0.92624 1.23138 1.03070 0.93276 1.01126 0.91468 0.83276 0.87584 0.87283 0.85450 0.90644 0.91185 0.87367 0.88369 0.88251 0.84694 0.90052 0.85617 0.85755 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.25 13.95 21.68 0.30 -58.94 16 2 C 0.05 3.05 4.99 84.95 0.42 3.48 16 3 Si 0.97 55.47 24.66 68.60 1.69 57.16 16 4 H -0.28 -16.90 6.37 99.48 0.63 -16.26 16 5 H -0.28 -15.67 7.11 99.48 0.71 -14.97 16 6 H -0.29 -15.80 7.11 99.48 0.71 -15.10 16 7 C -0.34 -20.78 8.31 84.09 0.70 -20.08 16 8 H 0.07 4.70 7.57 -2.91 -0.02 4.67 16 9 N -0.44 -24.00 2.42 -616.62 -1.49 -25.49 16 10 C 0.53 29.43 6.01 86.72 0.52 29.95 16 11 O -0.58 -36.85 12.41 -4.03 -0.05 -36.90 16 12 C -0.03 -1.49 6.83 42.46 0.29 -1.20 16 13 C -0.22 -8.33 10.76 22.30 0.24 -8.09 16 14 C 0.03 0.75 6.57 41.21 0.27 1.02 16 15 N -0.28 -7.67 3.74 -333.33 -1.25 -8.92 16 16 N -0.26 -9.69 8.71 -48.08 -0.42 -10.11 16 17 C 0.11 1.54 7.17 86.33 0.62 2.16 16 18 C -0.13 -0.98 5.91 30.69 0.18 -0.80 16 19 C -0.12 -1.03 5.98 30.80 0.18 -0.85 16 20 C -0.05 -0.78 6.28 30.03 0.19 -0.59 16 21 C 0.05 2.25 5.14 44.99 0.23 2.48 16 22 C -0.17 -6.40 9.81 30.60 0.30 -6.10 16 23 C -0.17 -6.08 10.37 30.59 0.32 -5.76 16 24 H 0.28 16.90 8.31 -92.71 -0.77 16.13 16 25 H 0.15 5.66 8.06 -2.91 -0.02 5.64 16 26 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.07 0.66 8.11 -2.39 -0.02 0.64 16 30 H 0.07 0.65 8.12 -2.38 -0.02 0.63 16 31 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.14 5.46 5.95 -2.39 -0.01 5.45 16 35 H 0.08 3.57 6.79 -2.39 -0.02 3.56 16 36 H 0.13 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -85.89 306.78 4.24 -81.65 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.99 Total: 5.92 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 4.47 Total: -4.37 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -2.85 Total: -103.45 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.05 Total: -36.90 kcal Atomic # 14 Polarization: 55.47 SS G_CDS: 1.69 Total: 57.16 kcal Total: -85.89 4.24 -81.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125418725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.551 kcal (2) G-P(sol) polarization free energy of solvation -85.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds