Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99572 * 2 1 4 4 H 1.48506 * 109.47127 * 239.99804 * 3 2 1 5 5 H 1.48492 * 109.47385 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46941 * 120.00097 * 3 2 1 7 7 C 1.38806 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00154 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99761 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46677 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47175 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00098 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00286 * 5.32493 * 13 12 11 15 15 C 1.50701 * 119.99872 * 185.31955 * 13 12 11 16 16 C 1.50701 * 115.55145 * 305.99616 * 15 13 12 17 17 C 1.38223 * 119.61781 * 292.86013 * 16 15 13 18 18 C 1.38629 * 119.16126 * 180.02562 * 17 16 15 19 19 C 1.38666 * 118.42080 * 0.02562 * 18 17 16 20 20 C 1.38186 * 119.16302 * 359.97438 * 19 18 17 21 21 N 1.31858 * 119.61690 * 113.16076 * 16 15 13 22 22 C 1.52999 * 117.51781 * 91.69483 * 15 13 12 23 23 C 1.53003 * 60.00265 * 107.48244 * 22 15 13 24 24 H 0.96998 * 120.00059 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99776 * 359.97438 * 9 7 2 26 26 H 1.09002 * 109.46855 * 60.00213 * 10 9 7 27 27 H 1.08999 * 109.47127 * 299.99775 * 10 9 7 28 28 H 1.09006 * 109.47380 * 59.99833 * 11 10 9 29 29 H 1.09007 * 109.47639 * 299.99899 * 11 10 9 30 30 H 0.97007 * 119.99675 * 0.02562 * 12 11 10 31 31 H 1.08002 * 120.41914 * 0.02562 * 17 16 15 32 32 H 1.08006 * 120.78623 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.41977 * 180.02562 * 19 18 17 34 34 H 1.08006 * 119.61438 * 179.97438 * 20 19 18 35 35 H 1.08999 * 117.50449 * 214.97130 * 22 15 13 36 36 H 1.09007 * 117.49915 * 359.97438 * 22 15 13 37 37 H 1.08994 * 117.49696 * 252.51462 * 23 22 15 38 38 H 1.08990 * 117.49805 * 107.48831 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 7 1.7965 -6.0884 0.0006 13 6 1.1227 -7.2556 0.0015 14 8 -0.0863 -7.2579 -0.0946 15 6 1.8715 -8.5579 0.1219 16 6 2.9721 -8.7703 -0.8854 17 6 2.6543 -8.9301 -2.2210 18 6 3.6742 -9.1254 -3.1394 19 6 4.9815 -9.1534 -2.6778 20 6 5.2226 -8.9863 -1.3275 21 7 4.2268 -8.8075 -0.4815 22 6 2.0806 -9.1257 1.5271 23 6 1.0819 -9.7875 0.5754 24 1 -0.4850 0.8400 -0.0004 25 1 0.3557 -2.3881 0.0005 26 1 2.6849 -3.7144 0.8906 27 1 2.6849 -3.7145 -0.8895 28 1 0.4369 -4.7621 -0.8886 29 1 0.4376 -4.7618 0.8914 30 1 2.7666 -6.0884 0.0002 31 1 1.6244 -8.9031 -2.5451 32 1 3.4557 -9.2528 -4.1894 33 1 5.8010 -9.3031 -3.3652 34 1 6.2380 -9.0072 -0.9600 35 1 3.0143 -9.6530 1.7231 36 1 1.6770 -8.5572 2.3650 37 1 0.0211 -9.6544 0.7871 38 1 1.3586 -10.7500 0.1453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127246455.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = 37.794573 kcal Electronic energy + Delta-G solvation = -20276.099443 eV Core-core repulsion = 17119.724227 eV Total energy + Delta-G solvation = -3156.375216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91625 -39.48205 -36.74286 -35.55945 -33.82121 -32.69477 -31.38107 -31.11032 -27.99862 -25.27745 -23.90023 -23.70471 -22.43575 -22.35220 -21.40657 -19.74185 -17.94392 -17.24095 -16.56636 -16.40930 -15.78271 -15.64525 -15.15061 -14.69527 -14.56040 -14.21789 -13.89684 -13.53890 -13.44142 -13.17879 -13.03698 -12.79814 -12.07141 -11.71044 -11.45790 -11.10320 -10.98802 -10.87184 -10.79080 -10.72199 -10.16290 -10.14657 -9.94876 -9.73876 -9.69928 -9.18609 -8.97138 -8.81305 -6.98955 -5.78803 -3.09623 0.77166 0.99420 2.52495 3.11661 3.37740 3.43401 3.47487 3.48986 3.70175 3.88781 4.38640 4.55464 4.58382 4.66936 4.69444 4.77002 4.82911 4.97490 5.17388 5.40178 5.45451 5.50509 5.50916 5.62399 5.68896 5.77421 5.83105 5.91124 5.95930 5.97094 6.14866 6.38268 6.49227 6.70897 6.74852 7.60062 7.66233 7.70038 8.28321 8.38867 9.49996 10.04461 10.39679 11.43753 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021702 B = 0.003549 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.908377 B = 7888.594599 C = 8616.080423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.714 5.714 13 C 0.555 3.445 14 O -0.535 6.535 15 C -0.122 4.122 16 C 0.164 3.836 17 C -0.154 4.154 18 C -0.073 4.073 19 C -0.173 4.173 20 C 0.101 3.899 21 N -0.473 5.473 22 C -0.132 4.132 23 C -0.133 4.133 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.401 0.599 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.966 -23.466 -3.095 25.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.364 5.364 13 C 0.339 3.661 14 O -0.411 6.411 15 C -0.126 4.126 16 C 0.026 3.974 17 C -0.174 4.174 18 C -0.099 4.099 19 C -0.193 4.193 20 C -0.056 4.056 21 N -0.182 5.182 22 C -0.169 4.169 23 C -0.171 4.171 24 H 0.067 0.933 25 H 0.220 0.780 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.235 0.765 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.390 -23.191 -2.265 24.766 hybrid contribution 0.578 0.939 -1.091 1.552 sum 8.969 -22.251 -3.356 24.224 Atomic orbital electron populations 1.69659 1.05152 1.25961 1.57157 1.24770 0.95556 0.97787 1.02634 0.86223 0.78500 0.83292 0.77877 1.21195 1.21587 1.21165 1.19152 0.91015 0.83867 1.43537 0.91103 1.42177 1.05980 0.99526 1.89727 1.20746 0.93467 0.85659 0.98441 1.21620 0.95456 0.81583 1.02624 1.45857 1.10610 1.05721 1.74230 1.19103 0.87030 0.83685 0.76314 1.90714 1.13765 1.87177 1.49486 1.19950 0.99011 0.95147 0.98495 1.19879 0.90475 0.95759 0.91236 1.21953 1.01127 1.00741 0.93616 1.21612 0.92567 0.95434 1.00240 1.22190 0.97710 1.01899 0.97516 1.22773 0.98213 0.94880 0.89755 1.67402 0.99400 1.11942 1.39444 1.23010 1.01519 1.01782 0.90605 1.23076 0.98882 0.93893 1.01229 0.93308 0.77997 0.95723 0.95902 0.91154 0.91157 0.76489 0.84610 0.84578 0.84642 0.82444 0.87049 0.87837 0.86829 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.92 5.60 -59.91 -0.34 -19.26 16 10 C 0.15 2.97 6.37 -4.04 -0.03 2.94 16 11 C 0.11 2.00 5.79 -4.04 -0.02 1.97 16 12 N -0.71 -10.90 5.52 -60.29 -0.33 -11.24 16 13 C 0.55 8.50 7.10 -10.99 -0.08 8.43 16 14 O -0.53 -9.96 16.46 5.56 0.09 -9.86 16 15 C -0.12 -1.46 2.16 -156.81 -0.34 -1.80 16 16 C 0.16 1.86 5.74 -82.59 -0.47 1.39 16 17 C -0.15 -1.59 9.72 -39.44 -0.38 -1.98 16 18 C -0.07 -0.60 10.18 -39.28 -0.40 -1.00 16 19 C -0.17 -1.31 10.11 -39.44 -0.40 -1.71 16 20 C 0.10 0.87 11.18 -17.55 -0.20 0.68 16 21 N -0.47 -5.19 9.81 -9.47 -0.09 -5.28 16 22 C -0.13 -1.34 9.73 -26.73 -0.26 -1.60 16 23 C -0.13 -1.34 9.74 -26.73 -0.26 -1.60 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.39 10.55 7.67 -40.82 -0.31 10.24 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.40 5.54 8.32 -40.82 -0.34 5.20 16 31 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.11 1.04 7.95 -51.93 -0.41 0.63 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.11 1.21 7.81 -51.93 -0.41 0.81 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -33.51 333.62 -8.27 -41.78 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.24 Total: 10.93 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -3.08 Total: -1.78 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.04 Total: -63.55 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.51 -8.27 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127246455.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.577 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds