Wall clock time and date at job start Mon Mar 30 2020 01:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99572 * 2 1 4 4 H 1.48506 * 109.47127 * 239.99804 * 3 2 1 5 5 H 1.48492 * 109.47385 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46941 * 120.00097 * 3 2 1 7 7 C 1.38806 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00154 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99761 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46677 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47175 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00098 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00286 * 5.32493 * 13 12 11 15 15 C 1.50701 * 119.99872 * 185.31955 * 13 12 11 16 16 C 1.50701 * 115.55145 * 305.99616 * 15 13 12 17 17 C 1.38223 * 119.61781 * 292.86013 * 16 15 13 18 18 C 1.38629 * 119.16126 * 180.02562 * 17 16 15 19 19 C 1.38666 * 118.42080 * 0.02562 * 18 17 16 20 20 C 1.38186 * 119.16302 * 359.97438 * 19 18 17 21 21 N 1.31858 * 119.61690 * 113.16076 * 16 15 13 22 22 C 1.52999 * 117.51781 * 91.69483 * 15 13 12 23 23 C 1.53003 * 60.00265 * 107.48244 * 22 15 13 24 24 H 0.96998 * 120.00059 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99776 * 359.97438 * 9 7 2 26 26 H 1.09002 * 109.46855 * 60.00213 * 10 9 7 27 27 H 1.08999 * 109.47127 * 299.99775 * 10 9 7 28 28 H 1.09006 * 109.47380 * 59.99833 * 11 10 9 29 29 H 1.09007 * 109.47639 * 299.99899 * 11 10 9 30 30 H 0.97007 * 119.99675 * 0.02562 * 12 11 10 31 31 H 1.08002 * 120.41914 * 0.02562 * 17 16 15 32 32 H 1.08006 * 120.78623 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.41977 * 180.02562 * 19 18 17 34 34 H 1.08006 * 119.61438 * 179.97438 * 20 19 18 35 35 H 1.08999 * 117.50449 * 214.97130 * 22 15 13 36 36 H 1.09007 * 117.49915 * 359.97438 * 22 15 13 37 37 H 1.08994 * 117.49696 * 252.51462 * 23 22 15 38 38 H 1.08990 * 117.49805 * 107.48831 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 7 1.7965 -6.0884 0.0006 13 6 1.1227 -7.2556 0.0015 14 8 -0.0863 -7.2579 -0.0946 15 6 1.8715 -8.5579 0.1219 16 6 2.9721 -8.7703 -0.8854 17 6 2.6543 -8.9301 -2.2210 18 6 3.6742 -9.1254 -3.1394 19 6 4.9815 -9.1534 -2.6778 20 6 5.2226 -8.9863 -1.3275 21 7 4.2268 -8.8075 -0.4815 22 6 2.0806 -9.1257 1.5271 23 6 1.0819 -9.7875 0.5754 24 1 -0.4850 0.8400 -0.0004 25 1 0.3557 -2.3881 0.0005 26 1 2.6849 -3.7144 0.8906 27 1 2.6849 -3.7145 -0.8895 28 1 0.4369 -4.7621 -0.8886 29 1 0.4376 -4.7618 0.8914 30 1 2.7666 -6.0884 0.0002 31 1 1.6244 -8.9031 -2.5451 32 1 3.4557 -9.2528 -4.1894 33 1 5.8010 -9.3031 -3.3652 34 1 6.2380 -9.0072 -0.9600 35 1 3.0143 -9.6530 1.7231 36 1 1.6770 -8.5572 2.3650 37 1 0.0211 -9.6544 0.7871 38 1 1.3586 -10.7500 0.1453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127246455.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:09 Heat of formation + Delta-G solvation = 14.512206 kcal Electronic energy + Delta-G solvation = -20277.109042 eV Core-core repulsion = 17119.724227 eV Total energy + Delta-G solvation = -3157.384816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79351 -40.51502 -37.83928 -37.10355 -35.55519 -33.36787 -33.18694 -31.96602 -29.71457 -26.50696 -25.27808 -24.57343 -23.67978 -23.17025 -22.95404 -20.85738 -19.36178 -18.84531 -17.34814 -17.16793 -17.15916 -16.68293 -16.53837 -16.24596 -15.77564 -15.36239 -15.13192 -14.92306 -14.74101 -14.65313 -14.11882 -13.79093 -13.14838 -13.07142 -12.78978 -12.66399 -12.60872 -12.47874 -12.15373 -11.91085 -11.78173 -11.65713 -11.11261 -11.00820 -10.81851 -10.40921 -10.25975 -9.91150 -9.10296 -7.98608 -5.30896 0.08257 0.33463 1.35141 1.47356 1.51335 1.57537 1.90708 2.55534 2.60366 2.88874 3.10054 3.35189 3.57649 3.65816 3.85187 3.91961 3.98280 4.07384 4.12154 4.14403 4.23242 4.27739 4.46565 4.51747 4.67708 4.73125 4.85186 4.89817 4.95264 5.05052 5.16181 5.20292 5.27038 5.27647 5.45707 5.75216 6.21517 6.36558 6.99462 7.05127 7.28055 7.97931 8.22583 9.24770 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021702 B = 0.003549 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.908377 B = 7888.594599 C = 8616.080423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.073 4.073 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.254 4.254 8 H 0.081 0.919 9 N -0.745 5.745 10 C 0.151 3.849 11 C 0.128 3.872 12 N -0.706 5.706 13 C 0.555 3.445 14 O -0.573 6.573 15 C -0.131 4.131 16 C 0.148 3.852 17 C -0.172 4.172 18 C -0.075 4.075 19 C -0.165 4.165 20 C 0.092 3.908 21 N -0.491 5.491 22 C -0.120 4.120 23 C -0.124 4.124 24 H 0.253 0.747 25 H 0.375 0.625 26 H 0.035 0.965 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.411 0.589 31 H 0.129 0.871 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.184 0.816 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 -24.441 -3.625 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.385 4.385 8 H 0.099 0.901 9 N -0.389 5.389 10 C 0.024 3.976 11 C 0.003 3.997 12 N -0.357 5.357 13 C 0.341 3.659 14 O -0.452 6.452 15 C -0.135 4.135 16 C 0.011 3.989 17 C -0.192 4.192 18 C -0.101 4.101 19 C -0.184 4.184 20 C -0.065 4.065 21 N -0.200 5.200 22 C -0.158 4.158 23 C -0.162 4.162 24 H 0.062 0.938 25 H 0.207 0.793 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.246 0.754 31 H 0.147 0.853 32 H 0.177 0.823 33 H 0.185 0.815 34 H 0.201 0.799 35 H 0.142 0.858 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.026 -24.207 -2.791 26.746 hybrid contribution -0.158 1.148 -0.963 1.507 sum 10.868 -23.060 -3.755 25.767 Atomic orbital electron populations 1.69831 1.06835 1.26476 1.58830 1.25672 0.96438 1.01440 1.03020 0.85120 0.77149 0.78529 0.78375 1.20092 1.22082 1.20083 1.19603 0.91683 0.84874 1.42325 0.90104 1.42387 1.05733 1.00922 1.89828 1.20795 0.93549 0.84290 0.98964 1.21215 0.94753 0.82266 1.01435 1.45717 1.10921 1.04863 1.74186 1.19695 0.86728 0.84606 0.74874 1.90691 1.15596 1.87832 1.51121 1.19813 0.99874 0.93651 1.00182 1.19745 0.90521 0.97369 0.91246 1.22043 1.01537 1.01730 0.93873 1.21951 0.92515 0.94535 1.01102 1.22562 0.98237 1.00003 0.97629 1.23312 0.98795 0.94157 0.90283 1.67370 0.99523 1.12707 1.40443 1.23065 1.01968 1.01134 0.89589 1.23137 0.98329 0.94018 1.00716 0.93787 0.79339 0.94676 0.95017 0.92578 0.92254 0.75375 0.85304 0.82297 0.81487 0.79925 0.85845 0.88045 0.87775 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.75 -38.98 5.60 -343.45 -1.92 -40.90 16 10 C 0.15 6.12 6.37 86.38 0.55 6.67 16 11 C 0.13 4.68 5.79 86.38 0.50 5.18 16 12 N -0.71 -21.55 5.52 -463.05 -2.56 -24.10 16 13 C 0.55 17.20 7.10 87.66 0.62 17.82 16 14 O -0.57 -21.98 16.46 -3.03 -0.05 -22.03 16 15 C -0.13 -3.08 2.16 -53.67 -0.12 -3.19 16 16 C 0.15 3.21 5.74 42.55 0.24 3.45 16 17 C -0.17 -3.38 9.72 22.36 0.22 -3.17 16 18 C -0.08 -1.08 10.18 22.47 0.23 -0.85 16 19 C -0.16 -1.96 10.11 22.36 0.23 -1.73 16 20 C 0.09 1.34 11.18 84.67 0.95 2.28 16 21 N -0.49 -9.89 9.81 -183.88 -1.80 -11.69 16 22 C -0.12 -2.32 9.73 30.60 0.30 -2.02 16 23 C -0.12 -2.42 9.74 30.60 0.30 -2.12 16 24 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 25 H 0.37 21.02 7.67 -92.71 -0.71 20.31 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.41 11.04 8.32 -92.70 -0.77 10.27 16 31 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 33 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.12 2.09 7.95 -2.39 -0.02 2.08 16 36 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.10 2.23 7.81 -2.39 -0.02 2.22 16 38 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -72.04 333.62 0.90 -71.15 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.40 Total: 34.37 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.32 Total: 5.09 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -6.00 Total: -136.65 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -72.04 0.90 -71.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127246455.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.661 kcal (2) G-P(sol) polarization free energy of solvation -72.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds