Wall clock time and date at job start Mon Mar 30 2020 02:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46932 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99858 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99750 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00104 * 180.02562 * 13 12 11 16 16 H 1.08999 * 115.55034 * 34.28093 * 15 13 12 17 17 C 1.53003 * 117.49929 * 248.61500 * 15 13 12 18 18 C 1.53001 * 117.50335 * 179.97438 * 15 13 12 19 19 H 1.09007 * 117.49348 * 0.02562 * 18 15 13 20 20 C 1.50697 * 117.50090 * 214.98305 * 18 15 13 21 21 C 1.38649 * 120.78442 * 299.71406 * 20 18 15 22 22 C 1.38209 * 119.15555 * 179.80151 * 21 20 18 23 23 N 1.31864 * 120.76531 * 0.48663 * 22 21 20 24 24 C 1.31860 * 121.73001 * 359.74079 * 23 22 21 25 25 C 1.38208 * 120.76239 * 0.02673 * 24 23 22 26 26 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 29 29 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 30 30 H 1.08998 * 109.47524 * 300.00356 * 11 10 9 31 31 H 1.09005 * 109.46939 * 60.00729 * 11 10 9 32 32 H 0.97000 * 119.99819 * 0.02562 * 12 11 10 33 33 H 1.08998 * 117.49788 * 359.97438 * 17 15 13 34 34 H 1.08998 * 117.50159 * 144.99730 * 17 15 13 35 35 H 1.08000 * 120.42339 * 0.02562 * 21 20 18 36 36 H 1.08003 * 119.61352 * 180.24797 * 22 21 20 37 37 H 1.07999 * 119.62282 * 179.97438 * 24 23 22 38 38 H 1.07997 * 120.42075 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 7 1.7966 -6.0884 -0.0013 13 6 1.1228 -7.2556 -0.0001 14 8 -0.0901 -7.2556 0.0009 15 6 1.8763 -8.5607 -0.0001 16 1 2.8155 -8.5612 0.5530 17 6 1.7999 -9.4206 -1.2633 18 6 1.0543 -9.8511 0.0019 19 1 -0.0316 -9.7561 0.0027 20 6 1.6051 -11.0258 0.7684 21 6 2.8336 -11.5765 0.4369 22 6 3.3085 -12.6508 1.1652 23 7 2.6035 -13.1574 2.1578 24 6 1.4296 -12.6624 2.4978 25 6 0.8928 -11.5854 1.8181 26 1 -0.4850 -0.8401 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 2.6843 -3.7140 -0.8921 29 1 2.6855 -3.7148 0.8878 30 1 0.4383 -4.7622 0.8899 31 1 0.4364 -4.7618 -0.8901 32 1 2.7666 -6.0883 -0.0017 33 1 1.2043 -9.0425 -2.0942 34 1 2.6888 -9.9868 -1.5412 35 1 3.4138 -11.1687 -0.3776 36 1 4.2664 -13.0830 0.9159 37 1 0.8808 -13.1042 3.3164 38 1 -0.0694 -11.1846 2.1010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127648604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:29 Heat of formation + Delta-G solvation = 33.223568 kcal Electronic energy + Delta-G solvation = -19482.351854 eV Core-core repulsion = 16325.778424 eV Total energy + Delta-G solvation = -3156.573430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85639 -39.80742 -37.22092 -35.78663 -34.11637 -32.37569 -31.55191 -31.22997 -27.90331 -25.22204 -24.52867 -23.64894 -23.03466 -21.70755 -21.23863 -20.12586 -17.95923 -17.48233 -16.98572 -16.46269 -15.93164 -15.71368 -15.47941 -14.77726 -14.48335 -14.26954 -14.18932 -13.93587 -13.70783 -13.65257 -12.97913 -12.71189 -12.39064 -11.99634 -11.65414 -11.44667 -11.19448 -10.94609 -10.73998 -10.68547 -10.06905 -9.98956 -9.84530 -9.62285 -9.52502 -9.25021 -9.08252 -8.92039 -7.11230 -6.16685 -3.18449 0.76006 0.79670 2.37914 3.01039 3.32660 3.48675 3.52312 3.65728 3.70088 4.03803 4.10473 4.27177 4.38253 4.50796 4.64177 4.69021 4.76156 4.83136 4.84149 5.17557 5.28784 5.36590 5.42825 5.46740 5.52691 5.54765 5.66639 5.71102 5.72894 5.96358 6.00336 6.31813 6.33860 6.56302 6.59370 7.47633 7.60783 7.72421 8.17157 8.69088 9.13794 10.00253 10.13546 11.31596 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045256 B = 0.002392 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.556556 B =11704.442344 C =11812.972279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.044 4.044 3 Si 1.083 2.917 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.337 4.337 8 H 0.066 0.934 9 N -0.741 5.741 10 C 0.150 3.850 11 C 0.110 3.890 12 N -0.717 5.717 13 C 0.539 3.461 14 O -0.541 6.541 15 C -0.171 4.171 16 H 0.127 0.873 17 C -0.140 4.140 18 C -0.092 4.092 19 H 0.133 0.867 20 C -0.007 4.007 21 C -0.174 4.174 22 C 0.100 3.900 23 N -0.491 5.491 24 C 0.101 3.899 25 C -0.163 4.163 26 H 0.256 0.744 27 H 0.369 0.631 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.402 0.598 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.605 -25.739 0.187 26.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.241 4.241 3 Si 0.913 3.087 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.468 4.468 8 H 0.084 0.916 9 N -0.387 5.387 10 C 0.022 3.978 11 C -0.014 4.014 12 N -0.367 5.367 13 C 0.325 3.675 14 O -0.418 6.418 15 C -0.192 4.192 16 H 0.144 0.856 17 C -0.177 4.177 18 C -0.110 4.110 19 H 0.150 0.850 20 C -0.015 4.015 21 C -0.194 4.194 22 C -0.056 4.056 23 N -0.200 5.200 24 C -0.056 4.056 25 C -0.183 4.183 26 H 0.067 0.933 27 H 0.203 0.797 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.236 0.764 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.132 -24.747 0.658 25.504 hybrid contribution 0.123 -0.887 -0.406 0.984 sum 6.256 -25.634 0.252 26.387 Atomic orbital electron populations 1.70885 1.06050 1.28550 1.53033 1.25865 0.97063 1.01132 1.00082 0.83211 0.74202 0.75395 0.75890 1.20922 1.22170 1.22163 1.19992 0.92040 0.85506 1.49235 0.91600 1.42198 1.05027 1.00561 1.90954 1.20690 0.93357 0.85143 0.98604 1.21607 0.95501 0.81798 1.02465 1.45823 1.10545 1.05726 1.74651 1.19505 0.87496 0.84318 0.76200 1.90715 1.13788 1.87489 1.49807 1.22344 1.01907 0.89959 1.05021 0.85559 1.23161 1.02889 1.00615 0.91061 1.21100 0.99802 0.90798 0.99348 0.84962 1.19545 0.93646 0.94157 0.94108 1.22080 0.96761 0.98574 1.01985 1.22760 0.99041 0.92914 0.90922 1.67674 1.07057 1.30012 1.15229 1.22789 0.91733 0.92944 0.98119 1.22060 1.01826 0.97894 0.96490 0.93285 0.79737 0.95639 0.95665 0.91326 0.91319 0.76445 0.87286 0.87206 0.84581 0.82676 0.82580 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.25 13.70 55.49 0.76 -28.49 16 2 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 3 Si 1.08 25.75 29.92 -169.99 -5.09 20.66 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.34 -9.54 9.99 -15.06 -0.15 -9.69 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.74 -18.80 5.60 -59.91 -0.34 -19.14 16 10 C 0.15 2.94 6.37 -4.04 -0.03 2.92 16 11 C 0.11 1.86 5.79 -4.04 -0.02 1.83 16 12 N -0.72 -9.45 5.56 -60.29 -0.33 -9.79 16 13 C 0.54 7.28 7.61 -10.99 -0.08 7.19 16 14 O -0.54 -9.46 16.26 5.55 0.09 -9.37 16 15 C -0.17 -1.58 5.84 -91.77 -0.54 -2.12 16 16 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.14 -1.05 9.59 -26.71 -0.26 -1.30 16 18 C -0.09 -0.82 5.59 -91.75 -0.51 -1.33 16 19 H 0.13 1.36 7.67 -51.93 -0.40 0.96 16 20 C -0.01 -0.06 5.64 -104.32 -0.59 -0.64 16 21 C -0.17 -1.26 9.39 -39.44 -0.37 -1.63 16 22 C 0.10 0.78 11.18 -17.55 -0.20 0.59 16 23 N -0.49 -4.74 10.36 -13.25 -0.14 -4.88 16 24 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 25 C -0.16 -1.35 9.84 -39.44 -0.39 -1.74 16 26 H 0.26 7.85 6.77 -40.82 -0.28 7.58 16 27 H 0.37 9.62 6.50 -40.82 -0.27 9.35 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 0.56 6.25 -51.93 -0.32 0.24 16 35 H 0.14 0.67 6.16 -52.49 -0.32 0.35 16 36 H 0.16 0.81 8.06 -52.48 -0.42 0.38 16 37 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -35.36 328.91 -8.46 -43.82 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.95 Total: 8.88 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -3.42 Total: -6.65 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.05 Total: -62.29 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.09 Total: 20.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.36 -8.46 -43.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127648604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.042 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds