Wall clock time and date at job start Mon Mar 30 2020 02:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46932 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99858 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99750 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00104 * 180.02562 * 13 12 11 16 16 H 1.08999 * 115.55034 * 34.28093 * 15 13 12 17 17 C 1.53003 * 117.49929 * 248.61500 * 15 13 12 18 18 C 1.53001 * 117.50335 * 179.97438 * 15 13 12 19 19 H 1.09007 * 117.49348 * 0.02562 * 18 15 13 20 20 C 1.50697 * 117.50090 * 214.98305 * 18 15 13 21 21 C 1.38649 * 120.78442 * 299.71406 * 20 18 15 22 22 C 1.38209 * 119.15555 * 179.80151 * 21 20 18 23 23 N 1.31864 * 120.76531 * 0.48663 * 22 21 20 24 24 C 1.31860 * 121.73001 * 359.74079 * 23 22 21 25 25 C 1.38208 * 120.76239 * 0.02673 * 24 23 22 26 26 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 29 29 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 30 30 H 1.08998 * 109.47524 * 300.00356 * 11 10 9 31 31 H 1.09005 * 109.46939 * 60.00729 * 11 10 9 32 32 H 0.97000 * 119.99819 * 0.02562 * 12 11 10 33 33 H 1.08998 * 117.49788 * 359.97438 * 17 15 13 34 34 H 1.08998 * 117.50159 * 144.99730 * 17 15 13 35 35 H 1.08000 * 120.42339 * 0.02562 * 21 20 18 36 36 H 1.08003 * 119.61352 * 180.24797 * 22 21 20 37 37 H 1.07999 * 119.62282 * 179.97438 * 24 23 22 38 38 H 1.07997 * 120.42075 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 7 1.7966 -6.0884 -0.0013 13 6 1.1228 -7.2556 -0.0001 14 8 -0.0901 -7.2556 0.0009 15 6 1.8763 -8.5607 -0.0001 16 1 2.8155 -8.5612 0.5530 17 6 1.7999 -9.4206 -1.2633 18 6 1.0543 -9.8511 0.0019 19 1 -0.0316 -9.7561 0.0027 20 6 1.6051 -11.0258 0.7684 21 6 2.8336 -11.5765 0.4369 22 6 3.3085 -12.6508 1.1652 23 7 2.6035 -13.1574 2.1578 24 6 1.4296 -12.6624 2.4978 25 6 0.8928 -11.5854 1.8181 26 1 -0.4850 -0.8401 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 2.6843 -3.7140 -0.8921 29 1 2.6855 -3.7148 0.8878 30 1 0.4383 -4.7622 0.8899 31 1 0.4364 -4.7618 -0.8901 32 1 2.7666 -6.0883 -0.0017 33 1 1.2043 -9.0425 -2.0942 34 1 2.6888 -9.9868 -1.5412 35 1 3.4138 -11.1687 -0.3776 36 1 4.2664 -13.0830 0.9159 37 1 0.8808 -13.1042 3.3164 38 1 -0.0694 -11.1846 2.1010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127648604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:29 Heat of formation + Delta-G solvation = 8.194998 kcal Electronic energy + Delta-G solvation = -19483.437174 eV Core-core repulsion = 16325.778424 eV Total energy + Delta-G solvation = -3157.658750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58076 -40.73776 -38.14278 -37.34208 -35.74344 -33.25379 -32.87544 -32.09957 -29.53835 -26.29046 -25.50228 -24.82646 -24.13136 -23.18644 -21.93554 -21.14321 -19.51108 -18.79064 -17.78701 -17.23558 -16.94775 -16.75563 -16.53844 -16.41131 -15.75229 -15.49891 -15.33291 -14.91576 -14.81254 -14.61433 -14.50011 -13.59477 -13.20659 -12.99616 -12.94711 -12.61801 -12.58128 -12.53558 -12.12019 -11.88819 -11.65943 -11.39021 -11.08119 -11.00237 -10.44809 -10.30580 -10.24414 -10.08684 -9.21439 -8.44951 -5.41439 0.18103 0.20518 1.37236 1.58916 1.69459 1.85567 1.94166 2.63738 2.71535 3.00608 3.32976 3.35958 3.54742 3.60636 3.72053 3.79654 3.85938 3.94480 4.05058 4.09068 4.16754 4.20749 4.26506 4.42987 4.60976 4.75617 4.87199 4.88676 4.92219 4.96146 4.98842 5.10960 5.26441 5.40789 5.53637 5.77248 6.42411 6.43986 7.00474 7.03319 7.11818 7.89814 8.00728 9.06635 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045256 B = 0.002392 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.556556 B =11704.442344 C =11812.972279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.106 4.106 3 Si 1.132 2.868 4 H -0.294 1.294 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.339 4.339 8 H 0.075 0.925 9 N -0.759 5.759 10 C 0.154 3.846 11 C 0.127 3.873 12 N -0.706 5.706 13 C 0.536 3.464 14 O -0.587 6.587 15 C -0.171 4.171 16 H 0.153 0.847 17 C -0.119 4.119 18 C -0.096 4.096 19 H 0.111 0.889 20 C -0.016 4.016 21 C -0.168 4.168 22 C 0.092 3.908 23 N -0.518 5.518 24 C 0.090 3.910 25 C -0.175 4.175 26 H 0.243 0.757 27 H 0.361 0.639 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.419 0.581 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.180 0.820 37 H 0.172 0.828 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.334 -26.750 -0.320 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.297 4.297 3 Si 0.956 3.044 4 H -0.220 1.220 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.093 0.907 9 N -0.405 5.405 10 C 0.028 3.972 11 C 0.002 3.998 12 N -0.358 5.358 13 C 0.324 3.676 14 O -0.468 6.468 15 C -0.192 4.192 16 H 0.171 0.829 17 C -0.156 4.156 18 C -0.115 4.115 19 H 0.129 0.871 20 C -0.024 4.024 21 C -0.187 4.187 22 C -0.065 4.065 23 N -0.227 5.227 24 C -0.066 4.066 25 C -0.195 4.195 26 H 0.054 0.946 27 H 0.193 0.807 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.256 0.744 33 H 0.120 0.880 34 H 0.162 0.838 35 H 0.182 0.818 36 H 0.197 0.803 37 H 0.189 0.811 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.928 -25.819 0.151 27.319 hybrid contribution -0.720 -0.680 -0.251 1.022 sum 8.207 -26.499 -0.100 27.741 Atomic orbital electron populations 1.71002 1.07335 1.27927 1.55892 1.27394 0.97101 1.05052 1.00122 0.82588 0.73339 0.71111 0.77374 1.22041 1.20072 1.19979 1.20399 0.92649 0.86612 1.47327 0.90749 1.42456 1.04984 1.01974 1.91063 1.20781 0.93509 0.83686 0.99262 1.21148 0.94774 0.82821 1.01016 1.45649 1.11302 1.04415 1.74406 1.20268 0.87169 0.85500 0.74679 1.90700 1.16084 1.88196 1.51786 1.22306 1.02278 0.87448 1.07196 0.82923 1.23324 1.03462 0.98987 0.89839 1.20989 0.98850 0.90852 1.00827 0.87119 1.19598 0.94408 0.94156 0.94214 1.22329 0.96177 0.97956 1.02246 1.23241 0.99796 0.93034 0.90396 1.67696 1.07723 1.30941 1.16368 1.23070 0.91768 0.93055 0.98662 1.22213 1.02235 0.98188 0.96858 0.94618 0.80741 0.94398 0.94606 0.93007 0.92771 0.74382 0.88002 0.83805 0.81784 0.80266 0.81058 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.63 13.70 21.65 0.30 -61.34 16 2 C -0.11 -6.15 5.50 84.86 0.47 -5.68 16 3 Si 1.13 51.22 29.92 68.60 2.05 53.27 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.34 -18.99 9.99 84.03 0.84 -18.15 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.76 -38.65 5.60 -343.44 -1.92 -40.57 16 10 C 0.15 5.89 6.37 86.38 0.55 6.44 16 11 C 0.13 4.29 5.79 86.38 0.50 4.79 16 12 N -0.71 -17.66 5.56 -463.05 -2.57 -20.24 16 13 C 0.54 14.01 7.61 87.66 0.67 14.67 16 14 O -0.59 -20.93 16.26 -3.04 -0.05 -20.98 16 15 C -0.17 -2.78 5.84 -11.54 -0.07 -2.85 16 16 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 17 C -0.12 -1.43 9.59 30.61 0.29 -1.14 16 18 C -0.10 -1.59 5.59 -11.53 -0.06 -1.65 16 19 H 0.11 2.32 7.67 -2.38 -0.02 2.30 16 20 C -0.02 -0.24 5.64 -19.67 -0.11 -0.35 16 21 C -0.17 -1.91 9.39 22.36 0.21 -1.70 16 22 C 0.09 1.21 11.18 84.68 0.95 2.16 16 23 N -0.52 -9.31 10.36 -195.85 -2.03 -11.33 16 24 C 0.09 1.44 11.18 84.68 0.95 2.39 16 25 C -0.18 -2.80 9.84 22.36 0.22 -2.58 16 26 H 0.24 15.43 6.77 -92.70 -0.63 14.80 16 27 H 0.36 19.32 6.50 -92.71 -0.60 18.71 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.42 7.53 8.47 -92.71 -0.79 6.75 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.14 0.76 6.25 -2.39 -0.01 0.75 16 35 H 0.16 0.84 6.16 -2.91 -0.02 0.82 16 36 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -77.36 328.91 1.02 -76.34 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.16 Total: 28.48 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.40 Total: -3.64 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -6.23 Total: -133.48 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.27 kcal Total: -77.36 1.02 -76.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127648604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.539 kcal (2) G-P(sol) polarization free energy of solvation -77.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds