Wall clock time and date at job start Mon Mar 30 2020 01:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00174 * 2 1 4 4 H 1.48506 * 109.47339 * 269.99854 * 3 2 1 5 5 H 1.48499 * 109.47301 * 30.00197 * 3 2 1 6 6 H 1.48497 * 109.46853 * 150.00333 * 3 2 1 7 7 C 1.38812 * 119.99238 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00508 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99544 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00165 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47139 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46741 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99863 * 179.97438 * 12 11 10 14 14 O 1.21551 * 119.99677 * 0.02562 * 13 12 11 15 15 C 1.47843 * 120.00009 * 179.97438 * 13 12 11 16 16 C 1.40025 * 120.55950 * 354.16472 * 15 13 12 17 17 C 1.38350 * 118.29050 * 179.97438 * 16 15 13 18 18 C 1.38352 * 119.30133 * 0.02562 * 17 16 15 19 19 N 1.31935 * 121.08012 * 359.73531 * 18 17 16 20 20 C 1.31690 * 121.87425 * 0.53439 * 19 18 17 21 21 C 1.50706 * 119.71135 * 179.75198 * 20 19 18 22 22 C 1.53003 * 117.49774 * 283.17098 * 21 20 19 23 23 C 1.52997 * 60.03179 * 107.48078 * 22 21 20 24 24 H 0.97007 * 119.99528 * 359.97438 * 1 2 3 25 25 H 0.97003 * 120.00345 * 359.97438 * 9 7 2 26 26 H 1.09002 * 109.47157 * 59.99038 * 10 9 7 27 27 H 1.09007 * 109.46674 * 299.99440 * 10 9 7 28 28 H 1.08993 * 109.47249 * 59.99820 * 11 10 9 29 29 H 1.08996 * 109.47090 * 299.98990 * 11 10 9 30 30 H 0.96996 * 120.00332 * 359.97438 * 12 11 10 31 31 H 1.08001 * 120.85372 * 359.95526 * 16 15 13 32 32 H 1.07995 * 120.35084 * 180.02562 * 17 16 15 33 33 H 1.07995 * 119.46283 * 180.02562 * 18 17 16 34 34 H 1.08999 * 115.56045 * 137.49101 * 21 20 19 35 35 H 1.08998 * 117.50108 * 214.98595 * 22 21 20 36 36 H 1.09009 * 117.49599 * 359.97438 * 22 21 20 37 37 H 1.09003 * 117.49843 * 107.49758 * 23 22 21 38 38 H 1.09001 * 117.49851 * 252.52360 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4711 -0.0011 11 6 5.6162 -2.1916 -0.0009 12 7 6.3486 -3.4604 -0.0014 13 6 7.6964 -3.4605 -0.0018 14 8 8.3042 -2.4078 -0.0013 15 6 8.4355 -4.7409 -0.0018 16 6 7.7527 -5.9571 0.1213 17 6 8.4909 -7.1272 0.1152 18 6 9.8670 -7.0588 -0.0105 19 7 10.4833 -5.8984 -0.1295 20 6 9.8252 -4.7577 -0.1240 21 6 10.5792 -3.4597 -0.2577 22 6 11.3212 -2.9434 0.9768 23 6 12.1077 -3.5212 -0.2016 24 1 -0.4850 0.8401 0.0004 25 1 3.8646 -0.3623 0.0004 26 1 3.8488 -3.0418 -0.8918 27 1 3.8483 -3.0436 0.8882 28 1 5.8795 -1.6208 0.8895 29 1 5.8795 -1.6194 -0.8904 30 1 5.8636 -4.3004 -0.0015 31 1 6.6773 -5.9812 0.2188 32 1 7.9983 -8.0837 0.2076 33 1 10.4458 -7.9706 -0.0160 34 1 10.1289 -2.7203 -0.9200 35 1 11.3591 -1.8644 1.1265 36 1 11.2636 -3.5424 1.8857 37 1 12.6630 -2.8223 -0.8271 38 1 12.5673 -4.5005 -0.0680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130825267.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:04 Heat of formation + Delta-G solvation = 44.570669 kcal Electronic energy + Delta-G solvation = -20174.941183 eV Core-core repulsion = 17018.859800 eV Total energy + Delta-G solvation = -3156.081383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.05783 -39.10610 -37.05136 -35.88047 -34.11329 -32.89096 -31.57791 -31.27623 -28.29937 -25.01676 -24.73159 -23.24018 -22.35201 -21.62642 -20.99979 -20.66377 -18.20273 -17.48473 -17.21634 -16.51348 -15.77630 -15.49657 -15.30209 -14.78402 -14.56183 -14.24847 -14.08447 -13.79164 -13.59949 -13.32287 -12.86829 -12.66054 -12.01881 -11.65600 -11.58375 -11.55198 -11.02768 -10.90340 -10.87894 -10.58272 -10.20054 -10.19557 -10.13653 -9.66887 -9.52540 -9.26396 -9.04314 -8.91656 -7.34731 -5.83655 -3.21434 0.36633 0.83207 2.73128 3.02155 3.35787 3.39313 3.43649 3.44336 3.80857 3.93070 4.32609 4.38838 4.46482 4.54345 4.70955 4.90370 4.96589 5.01662 5.09024 5.29504 5.35156 5.40113 5.54548 5.59830 5.60325 5.64846 5.70366 5.79496 5.90085 6.07127 6.13312 6.26260 6.31401 6.52372 6.54780 7.39762 7.60143 7.89285 8.11931 8.34314 9.11761 9.84058 10.02111 11.34144 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028261 B = 0.003398 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.529558 B = 8237.070862 C = 9142.958718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.148 3.852 11 C 0.108 3.892 12 N -0.718 5.718 13 C 0.559 3.441 14 O -0.523 6.523 15 C -0.179 4.179 16 C -0.040 4.040 17 C -0.186 4.186 18 C 0.124 3.876 19 N -0.486 5.486 20 C 0.217 3.783 21 C -0.107 4.107 22 C -0.150 4.150 23 C -0.169 4.169 24 H 0.261 0.739 25 H 0.364 0.636 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.399 0.601 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.986 -14.743 0.352 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.020 3.980 11 C -0.015 4.015 12 N -0.369 5.369 13 C 0.345 3.655 14 O -0.401 6.401 15 C -0.184 4.184 16 C -0.067 4.067 17 C -0.206 4.206 18 C -0.033 4.033 19 N -0.195 5.195 20 C 0.079 3.921 21 C -0.125 4.125 22 C -0.188 4.188 23 C -0.206 4.206 24 H 0.071 0.929 25 H 0.197 0.803 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.234 0.766 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.178 0.822 34 H 0.155 0.845 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 23.049 -14.031 0.265 26.985 hybrid contribution -0.896 0.589 0.115 1.078 sum 22.153 -13.441 0.381 25.915 Atomic orbital electron populations 1.69704 1.05133 1.26040 1.56987 1.24676 0.95268 0.97350 1.01574 0.86541 0.79288 0.84734 0.77958 1.20879 1.21549 1.20155 1.19001 0.80191 0.94883 1.43911 0.89093 1.42524 1.04160 1.01808 1.91361 1.20734 0.87597 0.90346 0.99302 1.21634 0.92422 0.84782 1.02684 1.45808 1.05855 1.10378 1.74892 1.17951 0.82075 0.88396 0.77085 1.90767 1.67642 1.32472 1.49190 1.20777 0.95176 0.94292 1.08191 1.21828 1.00703 0.91477 0.92673 1.22103 0.95590 0.99380 1.03539 1.22990 0.92310 0.95884 0.92122 1.67524 1.40502 0.97829 1.13634 1.20560 0.88915 0.92978 0.89655 1.21067 0.93063 0.94151 1.04246 1.22831 1.02576 1.01199 0.92214 1.23015 0.93017 1.03030 1.01562 0.92898 0.80346 0.94892 0.94942 0.91085 0.91081 0.76633 0.84092 0.83989 0.82186 0.84475 0.88180 0.89329 0.88711 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.00 13.97 55.49 0.78 -28.22 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.99 27.74 -169.99 -4.71 17.28 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.59 5.41 -59.90 -0.32 -17.92 16 10 C 0.15 2.68 6.37 -4.04 -0.03 2.65 16 11 C 0.11 1.68 5.79 -4.04 -0.02 1.66 16 12 N -0.72 -9.06 5.51 -61.25 -0.34 -9.40 16 13 C 0.56 7.68 7.74 -12.33 -0.10 7.58 16 14 O -0.52 -8.63 13.56 5.32 0.07 -8.56 16 15 C -0.18 -2.08 5.89 -104.82 -0.62 -2.70 16 16 C -0.04 -0.35 9.63 -38.87 -0.37 -0.72 16 17 C -0.19 -1.31 10.10 -39.50 -0.40 -1.71 16 18 C 0.12 1.00 11.17 -17.47 -0.20 0.81 16 19 N -0.49 -5.33 9.32 -9.14 -0.09 -5.42 16 20 C 0.22 2.64 6.49 -82.18 -0.53 2.10 16 21 C -0.11 -1.30 4.36 -91.73 -0.40 -1.70 16 22 C -0.15 -1.65 10.23 -26.73 -0.27 -1.92 16 23 C -0.17 -1.71 10.03 -26.69 -0.27 -1.98 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.36 8.36 5.53 -40.82 -0.23 8.14 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.40 3.90 6.61 -40.82 -0.27 3.63 16 31 H 0.14 0.85 6.56 -52.49 -0.34 0.51 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 1.86 6.54 -51.93 -0.34 1.52 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.05 7.57 -51.93 -0.39 0.66 16 LS Contribution 322.30 15.07 4.86 4.86 Total: -1.00 -33.69 322.30 -8.18 -41.88 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.97 Total: 8.47 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.46 Total: -2.96 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.03 Total: -60.96 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.07 Total: -8.56 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.69 -8.18 -41.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130825267.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.450 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds