Wall clock time and date at job start Mon Mar 30 2020 01:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00174 * 2 1 4 4 H 1.48506 * 109.47339 * 269.99854 * 3 2 1 5 5 H 1.48499 * 109.47301 * 30.00197 * 3 2 1 6 6 H 1.48497 * 109.46853 * 150.00333 * 3 2 1 7 7 C 1.38812 * 119.99238 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00508 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99544 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00165 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47139 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46741 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99863 * 179.97438 * 12 11 10 14 14 O 1.21551 * 119.99677 * 0.02562 * 13 12 11 15 15 C 1.47843 * 120.00009 * 179.97438 * 13 12 11 16 16 C 1.40025 * 120.55950 * 354.16472 * 15 13 12 17 17 C 1.38350 * 118.29050 * 179.97438 * 16 15 13 18 18 C 1.38352 * 119.30133 * 0.02562 * 17 16 15 19 19 N 1.31935 * 121.08012 * 359.73531 * 18 17 16 20 20 C 1.31690 * 121.87425 * 0.53439 * 19 18 17 21 21 C 1.50706 * 119.71135 * 179.75198 * 20 19 18 22 22 C 1.53003 * 117.49774 * 283.17098 * 21 20 19 23 23 C 1.52997 * 60.03179 * 107.48078 * 22 21 20 24 24 H 0.97007 * 119.99528 * 359.97438 * 1 2 3 25 25 H 0.97003 * 120.00345 * 359.97438 * 9 7 2 26 26 H 1.09002 * 109.47157 * 59.99038 * 10 9 7 27 27 H 1.09007 * 109.46674 * 299.99440 * 10 9 7 28 28 H 1.08993 * 109.47249 * 59.99820 * 11 10 9 29 29 H 1.08996 * 109.47090 * 299.98990 * 11 10 9 30 30 H 0.96996 * 120.00332 * 359.97438 * 12 11 10 31 31 H 1.08001 * 120.85372 * 359.95526 * 16 15 13 32 32 H 1.07995 * 120.35084 * 180.02562 * 17 16 15 33 33 H 1.07995 * 119.46283 * 180.02562 * 18 17 16 34 34 H 1.08999 * 115.56045 * 137.49101 * 21 20 19 35 35 H 1.08998 * 117.50108 * 214.98595 * 22 21 20 36 36 H 1.09009 * 117.49599 * 359.97438 * 22 21 20 37 37 H 1.09003 * 117.49843 * 107.49758 * 23 22 21 38 38 H 1.09001 * 117.49851 * 252.52360 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4711 -0.0011 11 6 5.6162 -2.1916 -0.0009 12 7 6.3486 -3.4604 -0.0014 13 6 7.6964 -3.4605 -0.0018 14 8 8.3042 -2.4078 -0.0013 15 6 8.4355 -4.7409 -0.0018 16 6 7.7527 -5.9571 0.1213 17 6 8.4909 -7.1272 0.1152 18 6 9.8670 -7.0588 -0.0105 19 7 10.4833 -5.8984 -0.1295 20 6 9.8252 -4.7577 -0.1240 21 6 10.5792 -3.4597 -0.2577 22 6 11.3212 -2.9434 0.9768 23 6 12.1077 -3.5212 -0.2016 24 1 -0.4850 0.8401 0.0004 25 1 3.8646 -0.3623 0.0004 26 1 3.8488 -3.0418 -0.8918 27 1 3.8483 -3.0436 0.8882 28 1 5.8795 -1.6208 0.8895 29 1 5.8795 -1.6194 -0.8904 30 1 5.8636 -4.3004 -0.0015 31 1 6.6773 -5.9812 0.2188 32 1 7.9983 -8.0837 0.2076 33 1 10.4458 -7.9706 -0.0160 34 1 10.1289 -2.7203 -0.9200 35 1 11.3591 -1.8644 1.1265 36 1 11.2636 -3.5424 1.8857 37 1 12.6630 -2.8223 -0.8271 38 1 12.5673 -4.5005 -0.0680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130825267.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:04 Heat of formation + Delta-G solvation = 20.864202 kcal Electronic energy + Delta-G solvation = -20175.969172 eV Core-core repulsion = 17018.859800 eV Total energy + Delta-G solvation = -3157.109372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.87198 -40.09942 -37.89576 -37.38956 -35.59555 -33.91284 -33.20079 -32.18449 -29.83159 -26.16846 -25.44493 -24.76276 -23.24405 -23.14204 -21.89261 -21.64979 -19.90799 -18.75075 -17.99316 -17.42955 -16.83733 -16.73009 -16.34469 -16.08683 -15.66318 -15.53169 -15.40861 -15.07856 -14.70369 -14.57381 -14.03675 -13.58028 -13.44791 -13.22204 -12.85400 -12.72159 -12.60600 -12.38868 -12.09232 -11.83707 -11.72231 -11.45499 -11.04611 -11.00359 -10.94351 -10.39276 -10.24093 -9.84651 -9.37278 -8.05977 -5.41359 -0.38364 0.16830 1.39170 1.40778 1.47984 1.80148 1.95632 2.46361 2.66273 3.03551 3.17714 3.26084 3.49697 3.68496 3.75951 3.83498 3.96839 4.01986 4.13575 4.18545 4.19907 4.23987 4.47085 4.55387 4.67476 4.76125 4.95624 4.98572 5.02828 5.04939 5.08080 5.19233 5.28336 5.35583 5.61400 5.71807 6.17037 6.42434 6.89206 7.02478 7.10834 7.77073 7.94487 9.14840 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028261 B = 0.003398 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.529558 B = 8237.070862 C = 9142.958718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.253 1.253 7 C -0.238 4.238 8 H 0.064 0.936 9 N -0.759 5.759 10 C 0.150 3.850 11 C 0.124 3.876 12 N -0.707 5.707 13 C 0.558 3.442 14 O -0.558 6.558 15 C -0.200 4.200 16 C -0.040 4.040 17 C -0.174 4.174 18 C 0.122 3.878 19 N -0.506 5.506 20 C 0.198 3.802 21 C -0.123 4.123 22 C -0.153 4.153 23 C -0.153 4.153 24 H 0.259 0.741 25 H 0.367 0.633 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.414 0.586 31 H 0.166 0.834 32 H 0.181 0.819 33 H 0.195 0.805 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.596 -16.535 0.490 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.178 1.178 7 C -0.369 4.369 8 H 0.082 0.918 9 N -0.405 5.405 10 C 0.023 3.977 11 C 0.000 4.000 12 N -0.360 5.360 13 C 0.345 3.655 14 O -0.438 6.438 15 C -0.206 4.206 16 C -0.066 4.066 17 C -0.193 4.193 18 C -0.035 4.035 19 N -0.215 5.215 20 C 0.060 3.940 21 C -0.142 4.142 22 C -0.191 4.191 23 C -0.190 4.190 24 H 0.068 0.932 25 H 0.200 0.800 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.252 0.748 31 H 0.183 0.817 32 H 0.198 0.802 33 H 0.211 0.789 34 H 0.134 0.866 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 24.700 -15.879 0.403 29.366 hybrid contribution -1.382 0.933 0.066 1.669 sum 23.318 -14.946 0.469 27.701 Atomic orbital electron populations 1.69870 1.07051 1.26840 1.59273 1.25481 0.96101 1.01223 1.02333 0.85459 0.78672 0.79785 0.78199 1.20365 1.22050 1.17801 1.19011 0.82188 0.93804 1.41864 0.91771 1.42549 1.02775 1.03936 1.91268 1.20839 0.88647 0.88293 0.99912 1.21252 0.90832 0.85930 1.01999 1.45594 1.05635 1.10059 1.74716 1.18337 0.82056 0.88953 0.76131 1.90749 1.68317 1.33953 1.50754 1.20645 0.95058 0.94233 1.10622 1.22175 1.02038 0.90769 0.91576 1.22531 0.95154 1.00359 1.01229 1.23677 0.93441 0.95978 0.90398 1.67533 1.41100 0.98309 1.14520 1.20561 0.89285 0.93304 0.90828 1.20986 0.94221 0.94460 1.04492 1.22827 1.02910 1.01161 0.92191 1.23034 0.91936 1.03211 1.00772 0.93171 0.80015 0.93967 0.93989 0.91907 0.91810 0.74823 0.81660 0.80159 0.78872 0.86649 0.88248 0.89493 0.87492 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.15 13.97 21.65 0.30 -61.85 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.95 45.29 27.74 68.60 1.90 47.19 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 7 C -0.24 -13.31 10.47 84.03 0.88 -12.43 16 8 H 0.06 3.87 8.06 -2.91 -0.02 3.84 16 9 N -0.76 -34.62 5.41 -343.43 -1.86 -36.47 16 10 C 0.15 5.17 6.37 86.38 0.55 5.72 16 11 C 0.12 3.71 5.79 86.38 0.50 4.21 16 12 N -0.71 -16.82 5.51 -465.98 -2.57 -19.38 16 13 C 0.56 15.02 7.74 86.78 0.67 15.70 16 14 O -0.56 -18.73 13.56 -3.88 -0.05 -18.78 16 15 C -0.20 -4.42 5.89 -19.99 -0.12 -4.54 16 16 C -0.04 -0.56 9.63 22.73 0.22 -0.34 16 17 C -0.17 -1.74 10.10 22.32 0.23 -1.51 16 18 C 0.12 1.56 11.17 84.70 0.95 2.51 16 19 N -0.51 -10.26 9.32 -182.85 -1.70 -11.96 16 20 C 0.20 4.70 6.49 42.89 0.28 4.97 16 21 C -0.12 -3.05 4.36 -11.51 -0.05 -3.10 16 22 C -0.15 -3.40 10.23 30.59 0.31 -3.09 16 23 C -0.15 -3.04 10.03 30.62 0.31 -2.73 16 24 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 25 H 0.37 16.23 5.53 -92.71 -0.51 15.71 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.41 7.10 6.61 -92.71 -0.61 6.49 16 31 H 0.17 1.38 6.56 -2.91 -0.02 1.36 16 32 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 33 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.12 3.32 6.54 -2.39 -0.02 3.30 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.11 2.06 7.57 -2.39 -0.02 2.05 16 Total: -1.00 -74.33 322.30 1.12 -73.21 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.09 Total: 25.68 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 5.19 Total: 2.37 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -5.83 Total: -129.67 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.05 Total: -18.78 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Total: -74.33 1.12 -73.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130825267.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.076 kcal (2) G-P(sol) polarization free energy of solvation -74.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds