Wall clock time and date at job start Mon Mar 30 2020 01:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48496 * 109.47395 * 269.99994 * 3 2 1 5 5 H 1.48505 * 109.47244 * 30.00036 * 3 2 1 6 6 H 1.48500 * 109.47059 * 149.99708 * 3 2 1 7 7 C 1.38807 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00081 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00251 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00072 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47165 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47310 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00139 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00475 * 354.53887 * 13 12 11 15 15 C 1.50703 * 120.00099 * 174.54028 * 13 12 11 16 16 C 1.50699 * 115.55295 * 302.82831 * 15 13 12 17 17 C 1.38679 * 120.41260 * 328.90157 * 16 15 13 18 18 C 1.38633 * 118.41465 * 180.02562 * 17 16 15 19 19 C 1.38219 * 119.16500 * 0.02562 * 18 17 16 20 20 N 1.31858 * 120.76253 * 359.97438 * 19 18 17 21 21 C 1.31882 * 121.72475 * 359.70377 * 20 19 18 22 22 C 1.52997 * 117.49868 * 157.15357 * 15 13 12 23 23 C 1.53005 * 117.49760 * 88.49468 * 15 13 12 24 24 H 0.97002 * 120.00094 * 359.97438 * 1 2 3 25 25 H 0.97002 * 120.00289 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47205 * 59.99888 * 10 9 7 27 27 H 1.08996 * 109.46914 * 300.00047 * 10 9 7 28 28 H 1.09001 * 109.47143 * 300.00308 * 11 10 9 29 29 H 1.08997 * 109.47182 * 59.99836 * 11 10 9 30 30 H 0.97004 * 120.00323 * 359.97438 * 12 11 10 31 31 H 1.07991 * 120.78929 * 0.03235 * 17 16 15 32 32 H 1.08004 * 120.41426 * 180.02562 * 18 17 16 33 33 H 1.07994 * 119.62075 * 179.97438 * 19 18 17 34 34 H 1.08007 * 119.61841 * 180.31015 * 21 20 19 35 35 H 1.09003 * 117.50088 * 0.02562 * 22 15 13 36 36 H 1.08999 * 117.50059 * 145.02406 * 22 15 13 37 37 H 1.08996 * 117.50063 * 214.97945 * 23 15 13 38 38 H 1.09001 * 117.50075 * 0.02562 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6163 -2.1913 0.0000 12 7 6.3488 -3.4599 -0.0006 13 6 7.6966 -3.4599 -0.0002 14 8 8.3031 -2.4143 -0.0993 15 6 8.4501 -4.7592 0.1233 16 6 8.1365 -5.5785 1.3486 17 6 7.7703 -4.9578 2.5334 18 6 7.4914 -5.7516 3.6352 19 6 7.5873 -7.1254 3.5173 20 7 7.9386 -7.6813 2.3744 21 6 8.2050 -6.9579 1.3043 22 6 9.8866 -4.7954 -0.4021 23 6 8.7729 -5.5142 -1.1677 24 1 -0.4850 0.8401 0.0004 25 1 3.8646 -0.3620 -0.0004 26 1 3.8485 -3.0426 -0.8897 27 1 3.8491 -3.0422 0.8902 28 1 5.8796 -1.6196 -0.8900 29 1 5.8797 -1.6197 0.8899 30 1 5.8639 -4.3000 -0.0006 31 1 7.7040 -3.8818 2.5962 32 1 7.2028 -5.3021 4.5739 33 1 7.3721 -7.7508 4.3710 34 1 8.4848 -7.4491 0.3840 35 1 10.2868 -3.8794 -0.8367 36 1 10.6047 -5.4122 0.1383 37 1 8.7588 -6.6034 -1.1308 38 1 8.4406 -5.0709 -2.1065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132743128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:07 Heat of formation + Delta-G solvation = 42.101318 kcal Electronic energy + Delta-G solvation = -20379.969957 eV Core-core repulsion = 17223.781495 eV Total energy + Delta-G solvation = -3156.188462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07291 -39.61461 -37.07264 -35.82259 -34.01091 -32.72803 -31.47527 -31.12853 -28.50475 -25.46571 -23.98406 -23.65825 -22.61587 -22.23602 -21.53810 -19.77461 -18.07906 -17.70405 -17.13286 -16.40973 -15.90258 -15.66977 -15.13900 -14.90298 -14.55312 -14.17742 -14.08587 -13.78419 -13.69657 -13.27571 -13.04091 -12.67279 -12.36040 -11.80698 -11.68748 -11.56328 -11.42233 -11.02253 -10.97952 -10.88472 -10.20281 -10.18312 -10.00521 -9.66846 -9.60975 -9.17865 -9.09579 -8.94229 -7.34647 -5.83433 -3.21243 0.73251 0.96732 2.37563 2.97409 3.27121 3.35089 3.38514 3.43008 3.65610 3.96669 4.23284 4.39381 4.43618 4.53605 4.54374 4.64332 4.67518 4.92798 5.10824 5.20430 5.25479 5.38006 5.39767 5.47952 5.53111 5.56230 5.59021 5.75257 5.82136 5.89051 5.93152 6.30043 6.35364 6.52565 6.55232 7.43563 7.64339 7.89566 8.11646 8.34438 9.11867 9.84105 10.02237 11.34385 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.003779 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.195717 B = 7407.296461 C = 8078.197061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.149 3.851 11 C 0.107 3.893 12 N -0.715 5.715 13 C 0.551 3.449 14 O -0.535 6.535 15 C -0.123 4.123 16 C -0.095 4.095 17 C -0.062 4.062 18 C -0.164 4.164 19 C 0.095 3.905 20 N -0.480 5.480 21 C 0.102 3.898 22 C -0.131 4.131 23 C -0.152 4.152 24 H 0.261 0.739 25 H 0.363 0.637 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.403 0.597 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.152 -14.776 3.005 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.017 4.017 12 N -0.365 5.365 13 C 0.336 3.664 14 O -0.411 6.411 15 C -0.127 4.127 16 C -0.097 4.097 17 C -0.088 4.088 18 C -0.183 4.183 19 C -0.062 4.062 20 N -0.188 5.188 21 C -0.055 4.055 22 C -0.168 4.168 23 C -0.189 4.189 24 H 0.071 0.929 25 H 0.196 0.804 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.237 0.763 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.371 -14.990 2.912 25.459 hybrid contribution 0.072 1.844 0.186 1.855 sum 20.443 -13.145 3.098 24.501 Atomic orbital electron populations 1.69699 1.05117 1.26022 1.57005 1.24667 0.95251 0.97297 1.01593 0.86551 0.79256 0.84798 0.77957 1.20880 1.21540 1.20226 1.19002 0.80191 0.94891 1.43876 0.89097 1.42524 1.04165 1.01789 1.91376 1.20720 0.87537 0.90283 0.99351 1.21637 0.92585 0.84942 1.02499 1.45828 1.05868 1.10343 1.74489 1.19220 0.82194 0.88782 0.76248 1.90720 1.68307 1.32821 1.49279 1.20066 1.01387 0.96253 0.94989 1.19777 1.01757 0.94460 0.93684 1.21485 0.94637 1.00884 0.91830 1.22185 1.01136 0.95180 0.99844 1.22819 0.94944 0.92846 0.95571 1.67743 1.10985 1.40581 0.99535 1.22646 0.95976 0.89808 0.97096 1.23111 0.89201 1.03201 1.01333 1.23220 1.02136 0.99769 0.93804 0.92899 0.80392 0.94845 0.94976 0.91147 0.91359 0.76304 0.84919 0.84385 0.82550 0.82596 0.86984 0.87682 0.87220 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.03 27.74 -169.99 -4.71 17.31 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 9 N -0.75 -17.71 5.41 -59.91 -0.32 -18.04 16 10 C 0.15 2.74 6.37 -4.04 -0.03 2.71 16 11 C 0.11 1.68 5.79 -4.05 -0.02 1.66 16 12 N -0.71 -9.15 5.53 -60.30 -0.33 -9.48 16 13 C 0.55 7.29 6.08 -10.98 -0.07 7.22 16 14 O -0.53 -9.07 16.52 5.56 0.09 -8.98 16 15 C -0.12 -1.21 2.38 -156.81 -0.37 -1.58 16 16 C -0.09 -0.91 5.46 -104.48 -0.57 -1.48 16 17 C -0.06 -0.63 9.44 -39.27 -0.37 -1.00 16 18 C -0.16 -1.43 10.11 -39.44 -0.40 -1.83 16 19 C 0.09 0.84 11.18 -17.55 -0.20 0.64 16 20 N -0.48 -4.95 10.36 -13.26 -0.14 -5.09 16 21 C 0.10 0.93 10.54 -17.55 -0.18 0.74 16 22 C -0.13 -1.10 9.73 -26.69 -0.26 -1.36 16 23 C -0.15 -1.11 9.59 -26.69 -0.26 -1.37 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.36 8.40 5.53 -40.82 -0.23 8.17 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.40 4.39 8.48 -40.82 -0.35 4.05 16 31 H 0.13 1.42 7.47 -52.49 -0.39 1.03 16 32 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.16 1.06 5.96 -52.48 -0.31 0.75 16 35 H 0.11 1.06 7.86 -51.93 -0.41 0.65 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.11 0.57 6.12 -51.93 -0.32 0.25 16 38 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -34.10 325.65 -7.69 -41.79 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.98 Total: 8.54 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.98 Total: -2.68 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.02 Total: -60.89 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.10 -7.69 -41.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132743128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.887 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds