Wall clock time and date at job start Mon Mar 30 2020 01:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48496 * 109.47395 * 269.99994 * 3 2 1 5 5 H 1.48505 * 109.47244 * 30.00036 * 3 2 1 6 6 H 1.48500 * 109.47059 * 149.99708 * 3 2 1 7 7 C 1.38807 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00081 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00251 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00072 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47165 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47310 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00139 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00475 * 354.53887 * 13 12 11 15 15 C 1.50703 * 120.00099 * 174.54028 * 13 12 11 16 16 C 1.50699 * 115.55295 * 302.82831 * 15 13 12 17 17 C 1.38679 * 120.41260 * 328.90157 * 16 15 13 18 18 C 1.38633 * 118.41465 * 180.02562 * 17 16 15 19 19 C 1.38219 * 119.16500 * 0.02562 * 18 17 16 20 20 N 1.31858 * 120.76253 * 359.97438 * 19 18 17 21 21 C 1.31882 * 121.72475 * 359.70377 * 20 19 18 22 22 C 1.52997 * 117.49868 * 157.15357 * 15 13 12 23 23 C 1.53005 * 117.49760 * 88.49468 * 15 13 12 24 24 H 0.97002 * 120.00094 * 359.97438 * 1 2 3 25 25 H 0.97002 * 120.00289 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47205 * 59.99888 * 10 9 7 27 27 H 1.08996 * 109.46914 * 300.00047 * 10 9 7 28 28 H 1.09001 * 109.47143 * 300.00308 * 11 10 9 29 29 H 1.08997 * 109.47182 * 59.99836 * 11 10 9 30 30 H 0.97004 * 120.00323 * 359.97438 * 12 11 10 31 31 H 1.07991 * 120.78929 * 0.03235 * 17 16 15 32 32 H 1.08004 * 120.41426 * 180.02562 * 18 17 16 33 33 H 1.07994 * 119.62075 * 179.97438 * 19 18 17 34 34 H 1.08007 * 119.61841 * 180.31015 * 21 20 19 35 35 H 1.09003 * 117.50088 * 0.02562 * 22 15 13 36 36 H 1.08999 * 117.50059 * 145.02406 * 22 15 13 37 37 H 1.08996 * 117.50063 * 214.97945 * 23 15 13 38 38 H 1.09001 * 117.50075 * 0.02562 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6163 -2.1913 0.0000 12 7 6.3488 -3.4599 -0.0006 13 6 7.6966 -3.4599 -0.0002 14 8 8.3031 -2.4143 -0.0993 15 6 8.4501 -4.7592 0.1233 16 6 8.1365 -5.5785 1.3486 17 6 7.7703 -4.9578 2.5334 18 6 7.4914 -5.7516 3.6352 19 6 7.5873 -7.1254 3.5173 20 7 7.9386 -7.6813 2.3744 21 6 8.2050 -6.9579 1.3043 22 6 9.8866 -4.7954 -0.4021 23 6 8.7729 -5.5142 -1.1677 24 1 -0.4850 0.8401 0.0004 25 1 3.8646 -0.3620 -0.0004 26 1 3.8485 -3.0426 -0.8897 27 1 3.8491 -3.0422 0.8902 28 1 5.8796 -1.6196 -0.8900 29 1 5.8797 -1.6197 0.8899 30 1 5.8639 -4.3000 -0.0006 31 1 7.7040 -3.8818 2.5962 32 1 7.2028 -5.3021 4.5739 33 1 7.3721 -7.7508 4.3710 34 1 8.4848 -7.4491 0.3840 35 1 10.2868 -3.8794 -0.8367 36 1 10.6047 -5.4122 0.1383 37 1 8.7588 -6.6034 -1.1308 38 1 8.4406 -5.0709 -2.1065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132743128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:07 Heat of formation + Delta-G solvation = 17.646586 kcal Electronic energy + Delta-G solvation = -20381.030394 eV Core-core repulsion = 17223.781495 eV Total energy + Delta-G solvation = -3157.248899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87220 -40.52905 -38.00326 -37.26772 -35.59098 -33.56523 -33.34133 -31.80570 -30.08220 -26.53648 -25.07512 -24.67113 -23.55051 -23.18849 -22.98800 -20.79962 -19.83255 -18.74697 -17.94809 -17.31421 -17.04789 -16.65264 -16.40782 -16.15379 -15.68145 -15.55154 -15.23698 -14.90456 -14.84584 -14.66753 -14.03467 -13.81722 -13.48456 -13.24680 -13.01350 -12.75484 -12.66691 -12.41062 -12.12153 -12.06498 -11.84671 -11.75256 -11.13734 -11.06286 -10.73152 -10.39145 -10.23596 -9.82681 -9.39599 -8.07173 -5.43104 0.06522 0.25906 1.37073 1.37684 1.39688 1.46787 1.93281 2.44960 2.57303 2.96510 3.24598 3.30195 3.48436 3.61089 3.70741 3.76116 3.87721 3.91892 3.96902 4.02480 4.13867 4.29306 4.45560 4.49646 4.63291 4.72009 4.87781 4.92655 4.95504 5.03591 5.12641 5.15306 5.25484 5.28026 5.69721 5.70075 6.15491 6.39988 6.97345 7.00640 7.07682 7.74667 7.92847 9.13658 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.003779 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.195717 B = 7407.296461 C = 8078.197061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.057 4.057 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.254 1.254 7 C -0.240 4.240 8 H 0.062 0.938 9 N -0.758 5.758 10 C 0.151 3.849 11 C 0.123 3.877 12 N -0.706 5.706 13 C 0.552 3.448 14 O -0.576 6.576 15 C -0.135 4.135 16 C -0.095 4.095 17 C -0.081 4.081 18 C -0.165 4.165 19 C 0.090 3.910 20 N -0.500 5.500 21 C 0.101 3.899 22 C -0.131 4.131 23 C -0.131 4.131 24 H 0.260 0.740 25 H 0.367 0.633 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.414 0.586 31 H 0.119 0.881 32 H 0.155 0.845 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.081 -15.901 3.011 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.250 4.250 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.178 1.178 7 C -0.371 4.371 8 H 0.080 0.920 9 N -0.404 5.404 10 C 0.025 3.975 11 C -0.002 4.002 12 N -0.357 5.357 13 C 0.339 3.661 14 O -0.455 6.455 15 C -0.139 4.139 16 C -0.097 4.097 17 C -0.107 4.107 18 C -0.184 4.184 19 C -0.067 4.067 20 N -0.208 5.208 21 C -0.055 4.055 22 C -0.168 4.168 23 C -0.167 4.167 24 H 0.069 0.931 25 H 0.200 0.800 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.250 0.750 31 H 0.137 0.863 32 H 0.173 0.827 33 H 0.197 0.803 34 H 0.197 0.803 35 H 0.116 0.884 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 22.339 -16.171 2.921 27.732 hybrid contribution -0.532 2.083 0.198 2.159 sum 21.807 -14.088 3.119 26.149 Atomic orbital electron populations 1.69869 1.07066 1.26894 1.59113 1.25478 0.96095 1.01211 1.02170 0.85453 0.78641 0.79720 0.78248 1.20291 1.21930 1.17842 1.18993 0.82181 0.93781 1.42146 0.92003 1.42526 1.02771 1.03836 1.91280 1.20801 0.88788 0.88274 0.99668 1.21263 0.90873 0.86120 1.01922 1.45688 1.05966 1.09783 1.74251 1.19772 0.81925 0.89593 0.74816 1.90698 1.69010 1.34688 1.51138 1.19930 1.02084 0.95133 0.96736 1.19741 1.02026 0.94723 0.93243 1.21546 0.95788 1.00484 0.92859 1.22392 1.00621 0.95251 1.00172 1.23238 0.94243 0.93176 0.96002 1.67798 1.11666 1.41157 1.00229 1.22968 0.95372 0.89450 0.97725 1.23180 0.88985 1.03183 1.01467 1.23393 0.99904 1.01131 0.92305 0.93117 0.79981 0.94194 0.94406 0.91817 0.91952 0.75002 0.86263 0.82692 0.80251 0.80283 0.88413 0.85945 0.84375 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.26 13.97 21.65 0.30 -61.96 16 2 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 3 Si 0.95 45.30 27.74 68.60 1.90 47.20 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.25 -11.00 6.52 99.48 0.65 -10.35 16 7 C -0.24 -13.58 10.47 84.03 0.88 -12.70 16 8 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 9 N -0.76 -34.99 5.41 -343.46 -1.86 -36.85 16 10 C 0.15 5.41 6.37 86.38 0.55 5.96 16 11 C 0.12 3.73 5.79 86.38 0.50 4.23 16 12 N -0.71 -17.25 5.53 -463.07 -2.56 -19.81 16 13 C 0.55 14.12 6.08 87.66 0.53 14.66 16 14 O -0.58 -19.43 16.52 -3.03 -0.05 -19.48 16 15 C -0.13 -2.42 2.38 -53.67 -0.13 -2.55 16 16 C -0.10 -1.66 5.46 -19.77 -0.11 -1.77 16 17 C -0.08 -1.54 9.44 22.47 0.21 -1.33 16 18 C -0.16 -2.63 10.11 22.36 0.23 -2.40 16 19 C 0.09 1.40 11.18 84.68 0.95 2.35 16 20 N -0.50 -9.17 10.36 -195.85 -2.03 -11.20 16 21 C 0.10 1.59 10.54 84.67 0.89 2.48 16 22 C -0.13 -1.94 9.73 30.62 0.30 -1.64 16 23 C -0.13 -1.53 9.59 30.62 0.29 -1.24 16 24 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.37 16.35 5.53 -92.71 -0.51 15.84 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.41 8.36 8.48 -92.71 -0.79 7.57 16 31 H 0.12 2.55 7.47 -2.92 -0.02 2.53 16 32 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.18 1.78 5.96 -2.91 -0.02 1.76 16 35 H 0.10 1.76 7.86 -2.39 -0.02 1.74 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.14 0.84 6.12 -2.39 -0.01 0.82 16 38 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -73.90 325.65 1.01 -72.90 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.27 Total: 26.05 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.56 Total: 3.15 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -6.14 Total: -129.82 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.05 Total: -19.48 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Total: -73.90 1.01 -72.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132743128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.543 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds