Wall clock time and date at job start Mon Mar 30 2020 01:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99645 * 2 1 4 4 H 1.48508 * 109.47361 * 269.99598 * 3 2 1 5 5 H 1.48502 * 109.47537 * 29.99891 * 3 2 1 6 6 H 1.48502 * 109.47074 * 150.00067 * 3 2 1 7 7 C 1.38809 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99698 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99998 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99740 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47112 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47365 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00096 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99846 * 179.97438 * 13 12 11 16 16 H 1.09002 * 110.26294 * 59.29968 * 15 13 12 17 17 C 1.54338 * 110.37392 * 181.40782 * 15 13 12 18 18 C 1.54374 * 102.38548 * 145.32217 * 17 15 13 19 19 C 1.51221 * 105.12408 * 333.70700 * 18 17 15 20 20 C 1.38732 * 130.69880 * 197.14939 * 19 18 17 21 21 C 1.38578 * 118.55948 * 179.97438 * 20 19 18 22 22 C 1.38235 * 118.99173 * 0.02562 * 21 20 19 23 23 N 1.31687 * 120.79544 * 359.97438 * 22 21 20 24 24 C 1.32301 * 122.03333 * 0.02562 * 23 22 21 25 25 H 0.96997 * 120.00219 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99920 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.47235 * 60.00597 * 10 9 7 28 28 H 1.08997 * 109.47473 * 299.99946 * 10 9 7 29 29 H 1.09001 * 109.47178 * 59.99495 * 11 10 9 30 30 H 1.09007 * 109.46634 * 300.00248 * 11 10 9 31 31 H 0.97006 * 120.00149 * 359.97438 * 12 11 10 32 32 H 1.08995 * 110.82114 * 263.54481 * 17 15 13 33 33 H 1.09001 * 110.82472 * 27.09938 * 17 15 13 34 34 H 1.09006 * 110.30777 * 214.79774 * 18 17 15 35 35 H 1.08999 * 110.39694 * 92.67056 * 18 17 15 36 36 H 1.07996 * 120.72398 * 359.97438 * 20 19 18 37 37 H 1.08000 * 120.51153 * 180.02562 * 21 20 19 38 38 H 1.07992 * 119.60340 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0011 11 6 5.6165 -2.1912 0.0009 12 7 6.3490 -3.4598 0.0014 13 6 7.6968 -3.4598 0.0008 14 8 8.3031 -2.4094 -0.0007 15 6 8.4503 -4.7649 0.0019 16 1 8.1865 -5.3538 -0.8766 17 6 9.9716 -4.5070 0.0364 18 6 10.4876 -5.6837 0.8922 19 6 9.3221 -6.0706 1.7746 20 6 9.2795 -6.8262 2.9373 21 6 8.0540 -7.0272 3.5523 22 6 6.9217 -6.4705 2.9877 23 7 6.9997 -5.7585 1.8826 24 6 8.1503 -5.5440 1.2658 25 1 -0.4850 0.8400 -0.0004 26 1 3.8647 -0.3620 -0.0004 27 1 3.8486 -3.0433 -0.8882 28 1 3.8493 -3.0413 0.8918 29 1 5.8798 -1.6187 0.8903 30 1 5.8797 -1.6203 -0.8897 31 1 5.8640 -4.2999 0.0022 32 1 10.3937 -4.5439 -0.9678 33 1 10.1922 -3.5532 0.5159 34 1 11.3341 -5.3660 1.5011 35 1 10.7737 -6.5202 0.2547 36 1 10.1818 -7.2487 3.3541 37 1 7.9845 -7.6100 4.4589 38 1 5.9617 -6.6205 3.4589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132981170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:24 Heat of formation + Delta-G solvation = 10.477105 kcal Electronic energy + Delta-G solvation = -20400.043667 eV Core-core repulsion = 17242.483877 eV Total energy + Delta-G solvation = -3157.559791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.26707 -39.32384 -36.46457 -35.62569 -33.89888 -32.97539 -31.37827 -29.68931 -29.15016 -27.51489 -23.80233 -23.65434 -22.39436 -21.60587 -21.33107 -19.94613 -17.86616 -17.27799 -17.04544 -16.61451 -15.80648 -15.43465 -14.95788 -14.84469 -14.32964 -13.89571 -13.81577 -13.71004 -13.58446 -13.37081 -12.97447 -12.60711 -12.26131 -12.00405 -11.89353 -11.48045 -11.44338 -11.34836 -10.88402 -10.81574 -10.13780 -10.12724 -9.87542 -9.59162 -9.54356 -9.00436 -8.95539 -8.79233 -7.25831 -5.76649 -3.13464 0.76269 0.97785 2.63828 3.23043 3.40943 3.44964 3.47978 3.52217 3.64811 4.01998 4.42756 4.52066 4.60744 4.62335 4.70399 4.85534 4.99186 5.05919 5.17679 5.26194 5.41329 5.45047 5.49648 5.50166 5.65315 5.69142 5.72639 5.82426 5.89422 5.93438 6.03746 6.37432 6.49874 6.67503 6.73232 7.66664 7.70100 7.97780 8.32489 8.41739 9.19765 9.92097 10.11024 11.41385 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.003600 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.520684 B = 7775.334390 C = 8480.303913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.149 3.851 11 C 0.108 3.892 12 N -0.708 5.708 13 C 0.523 3.477 14 O -0.544 6.544 15 C -0.060 4.060 16 H 0.120 0.880 17 C -0.103 4.103 18 C -0.079 4.079 19 C -0.143 4.143 20 C -0.066 4.066 21 C -0.171 4.171 22 C 0.107 3.893 23 N -0.470 5.470 24 C 0.122 3.878 25 H 0.260 0.740 26 H 0.363 0.637 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.407 0.593 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.982 -17.369 3.887 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.022 3.978 11 C -0.016 4.016 12 N -0.359 5.359 13 C 0.307 3.693 14 O -0.422 6.422 15 C -0.082 4.082 16 H 0.138 0.862 17 C -0.141 4.141 18 C -0.117 4.117 19 C -0.145 4.145 20 C -0.092 4.092 21 C -0.191 4.191 22 C -0.050 4.050 23 N -0.179 5.179 24 C -0.016 4.016 25 H 0.070 0.930 26 H 0.196 0.804 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.243 0.757 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 22.369 -16.325 3.540 27.918 hybrid contribution 0.861 0.325 0.533 1.064 sum 23.230 -16.000 4.073 28.499 Atomic orbital electron populations 1.69701 1.05098 1.25923 1.57364 1.24665 0.95261 0.97277 1.01802 0.86543 0.79292 0.84806 0.77912 1.20932 1.21618 1.20198 1.19025 0.80271 0.94871 1.43404 0.89082 1.42544 1.04135 1.01902 1.91349 1.20721 0.87669 0.90082 0.99370 1.21579 0.92559 0.85253 1.02174 1.45824 1.05964 1.10414 1.73693 1.20070 0.82616 0.90261 0.76314 1.90690 1.68198 1.32983 1.50307 1.20902 0.97313 0.94157 0.95837 0.86213 1.22294 0.90737 0.99578 1.01491 1.21021 0.95609 0.98404 0.96647 1.21419 0.97552 0.99059 0.96498 1.21066 0.98443 0.96074 0.93578 1.22127 0.93446 1.01886 1.01594 1.22707 0.98951 0.92340 0.91007 1.66808 1.28161 1.13871 1.09013 1.21387 0.88937 0.95784 0.95443 0.92989 0.80450 0.94918 0.94775 0.91599 0.91426 0.75744 0.89308 0.88670 0.89979 0.89590 0.84918 0.84406 0.82156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.68 13.97 55.49 0.78 -28.90 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.63 27.73 -169.99 -4.71 17.91 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 7 C -0.25 -7.12 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.75 -18.54 5.41 -59.91 -0.32 -18.87 16 10 C 0.15 2.96 6.37 -4.04 -0.03 2.93 16 11 C 0.11 1.89 5.79 -4.04 -0.02 1.86 16 12 N -0.71 -10.44 5.34 -60.29 -0.32 -10.76 16 13 C 0.52 7.66 7.17 -10.98 -0.08 7.58 16 14 O -0.54 -9.78 15.51 5.56 0.09 -9.69 16 15 C -0.06 -0.64 3.26 -91.84 -0.30 -0.94 16 16 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 17 C -0.10 -0.90 6.34 -25.31 -0.16 -1.06 16 18 C -0.08 -0.55 6.77 -26.91 -0.18 -0.73 16 19 C -0.14 -1.32 6.16 -104.21 -0.64 -1.96 16 20 C -0.07 -0.51 10.17 -39.27 -0.40 -0.91 16 21 C -0.17 -1.32 10.12 -39.46 -0.40 -1.72 16 22 C 0.11 1.04 11.18 -17.61 -0.20 0.84 16 23 N -0.47 -5.68 9.72 -9.19 -0.09 -5.77 16 24 C 0.12 1.38 6.59 -82.03 -0.54 0.84 16 25 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 26 H 0.36 8.78 5.53 -40.82 -0.23 8.55 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.41 5.37 8.01 -40.82 -0.33 5.05 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.04 7.05 -51.93 -0.37 0.67 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -35.41 320.57 -8.12 -43.53 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.16 Total: 8.19 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.20 Total: -0.47 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: 0.04 Total: -64.30 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.41 -8.12 -43.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132981170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.005 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds