Wall clock time and date at job start Mon Mar 30 2020 01:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99645 * 2 1 4 4 H 1.48508 * 109.47361 * 269.99598 * 3 2 1 5 5 H 1.48502 * 109.47537 * 29.99891 * 3 2 1 6 6 H 1.48502 * 109.47074 * 150.00067 * 3 2 1 7 7 C 1.38809 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99698 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99998 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99740 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47112 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47365 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00096 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99846 * 179.97438 * 13 12 11 16 16 H 1.09002 * 110.26294 * 59.29968 * 15 13 12 17 17 C 1.54338 * 110.37392 * 181.40782 * 15 13 12 18 18 C 1.54374 * 102.38548 * 145.32217 * 17 15 13 19 19 C 1.51221 * 105.12408 * 333.70700 * 18 17 15 20 20 C 1.38732 * 130.69880 * 197.14939 * 19 18 17 21 21 C 1.38578 * 118.55948 * 179.97438 * 20 19 18 22 22 C 1.38235 * 118.99173 * 0.02562 * 21 20 19 23 23 N 1.31687 * 120.79544 * 359.97438 * 22 21 20 24 24 C 1.32301 * 122.03333 * 0.02562 * 23 22 21 25 25 H 0.96997 * 120.00219 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99920 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.47235 * 60.00597 * 10 9 7 28 28 H 1.08997 * 109.47473 * 299.99946 * 10 9 7 29 29 H 1.09001 * 109.47178 * 59.99495 * 11 10 9 30 30 H 1.09007 * 109.46634 * 300.00248 * 11 10 9 31 31 H 0.97006 * 120.00149 * 359.97438 * 12 11 10 32 32 H 1.08995 * 110.82114 * 263.54481 * 17 15 13 33 33 H 1.09001 * 110.82472 * 27.09938 * 17 15 13 34 34 H 1.09006 * 110.30777 * 214.79774 * 18 17 15 35 35 H 1.08999 * 110.39694 * 92.67056 * 18 17 15 36 36 H 1.07996 * 120.72398 * 359.97438 * 20 19 18 37 37 H 1.08000 * 120.51153 * 180.02562 * 21 20 19 38 38 H 1.07992 * 119.60340 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0011 11 6 5.6165 -2.1912 0.0009 12 7 6.3490 -3.4598 0.0014 13 6 7.6968 -3.4598 0.0008 14 8 8.3031 -2.4094 -0.0007 15 6 8.4503 -4.7649 0.0019 16 1 8.1865 -5.3538 -0.8766 17 6 9.9716 -4.5070 0.0364 18 6 10.4876 -5.6837 0.8922 19 6 9.3221 -6.0706 1.7746 20 6 9.2795 -6.8262 2.9373 21 6 8.0540 -7.0272 3.5523 22 6 6.9217 -6.4705 2.9877 23 7 6.9997 -5.7585 1.8826 24 6 8.1503 -5.5440 1.2658 25 1 -0.4850 0.8400 -0.0004 26 1 3.8647 -0.3620 -0.0004 27 1 3.8486 -3.0433 -0.8882 28 1 3.8493 -3.0413 0.8918 29 1 5.8798 -1.6187 0.8903 30 1 5.8797 -1.6203 -0.8897 31 1 5.8640 -4.2999 0.0022 32 1 10.3937 -4.5439 -0.9678 33 1 10.1922 -3.5532 0.5159 34 1 11.3341 -5.3660 1.5011 35 1 10.7737 -6.5202 0.2547 36 1 10.1818 -7.2487 3.3541 37 1 7.9845 -7.6100 4.4589 38 1 5.9617 -6.6205 3.4589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132981170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:23 Heat of formation + Delta-G solvation = -15.239947 kcal Electronic energy + Delta-G solvation = -20401.158842 eV Core-core repulsion = 17242.483877 eV Total energy + Delta-G solvation = -3158.674966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02807 -40.40700 -37.63895 -36.88014 -35.53703 -33.79140 -33.34438 -30.58136 -30.16954 -28.76565 -25.40471 -24.45322 -23.47428 -23.04430 -22.27795 -20.99509 -19.84475 -18.46443 -17.78425 -17.42312 -16.99149 -16.57341 -16.34723 -15.91573 -15.81555 -15.51708 -15.02566 -14.80696 -14.56202 -14.42234 -14.10768 -13.72025 -13.48596 -13.23011 -12.95503 -12.74238 -12.69223 -12.57894 -12.47599 -12.10874 -11.99499 -11.84424 -11.15094 -11.05618 -10.64971 -10.26712 -10.13609 -9.68753 -9.39088 -8.06839 -5.42621 0.09805 0.34713 1.37621 1.39664 1.46971 1.52145 2.08776 2.45318 2.81013 2.93552 3.24510 3.34388 3.60307 3.79084 3.87233 3.92475 4.02911 4.10226 4.15267 4.20975 4.30841 4.46042 4.50432 4.60020 4.65205 4.83356 4.96298 5.00762 5.05547 5.07805 5.21651 5.25023 5.30237 5.39146 5.70140 5.76897 6.16028 6.49471 7.00105 7.00945 7.17016 7.74726 7.93869 9.14082 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.003600 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.520684 B = 7775.334390 C = 8480.303913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.257 1.257 7 C -0.240 4.240 8 H 0.062 0.938 9 N -0.758 5.758 10 C 0.153 3.847 11 C 0.124 3.876 12 N -0.704 5.704 13 C 0.520 3.480 14 O -0.581 6.581 15 C -0.055 4.055 16 H 0.142 0.858 17 C -0.102 4.102 18 C -0.071 4.071 19 C -0.147 4.147 20 C -0.069 4.069 21 C -0.163 4.163 22 C 0.084 3.916 23 N -0.504 5.504 24 C 0.091 3.909 25 H 0.260 0.740 26 H 0.367 0.633 27 H 0.041 0.959 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.415 0.585 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.164 0.836 37 H 0.168 0.832 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.810 -18.475 4.259 32.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.181 1.181 7 C -0.371 4.371 8 H 0.080 0.920 9 N -0.404 5.404 10 C 0.027 3.973 11 C -0.001 4.001 12 N -0.355 5.355 13 C 0.306 3.694 14 O -0.461 6.461 15 C -0.076 4.076 16 H 0.159 0.841 17 C -0.140 4.140 18 C -0.108 4.108 19 C -0.149 4.149 20 C -0.095 4.095 21 C -0.182 4.182 22 C -0.074 4.074 23 N -0.213 5.213 24 C -0.047 4.047 25 H 0.069 0.931 26 H 0.200 0.800 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.252 0.748 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 25.236 -17.482 3.911 30.948 hybrid contribution -0.041 0.532 0.466 0.708 sum 25.195 -16.951 4.377 30.680 Atomic orbital electron populations 1.69869 1.07006 1.26894 1.59187 1.25486 0.96146 1.01219 1.02204 0.85432 0.78531 0.79669 0.78315 1.20102 1.21778 1.18134 1.19010 0.82143 0.93837 1.42073 0.92008 1.42541 1.02816 1.03787 1.91257 1.20774 0.88838 0.88206 0.99528 1.21213 0.91000 0.86416 1.01476 1.45760 1.06303 1.09702 1.73720 1.20836 0.82238 0.91451 0.74837 1.90667 1.68788 1.34788 1.51872 1.20996 0.97822 0.91837 0.96964 0.84071 1.22319 0.89515 0.99217 1.02914 1.21053 0.95025 0.98247 0.96457 1.21750 0.97508 0.98677 0.96989 1.21487 0.99631 0.95419 0.92953 1.22472 0.92777 1.00891 1.02090 1.23062 1.00458 0.92846 0.90990 1.66727 1.29176 1.15114 1.10243 1.21526 0.89707 0.97284 0.96134 0.93094 0.80021 0.94101 0.94756 0.92840 0.91623 0.74801 0.87217 0.91217 0.88576 0.87110 0.81835 0.81468 0.81137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.51 13.97 21.65 0.30 -63.20 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 3 Si 0.95 46.69 27.73 68.60 1.90 48.59 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.26 -11.61 6.52 99.48 0.65 -10.96 16 7 C -0.24 -14.06 10.47 84.03 0.88 -13.18 16 8 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 9 N -0.76 -37.01 5.41 -343.46 -1.86 -38.87 16 10 C 0.15 6.03 6.37 86.38 0.55 6.58 16 11 C 0.12 4.27 5.79 86.38 0.50 4.77 16 12 N -0.70 -20.53 5.34 -463.06 -2.47 -23.01 16 13 C 0.52 15.04 7.17 87.66 0.63 15.67 16 14 O -0.58 -20.94 15.51 -3.02 -0.05 -20.99 16 15 C -0.05 -1.09 3.26 -11.58 -0.04 -1.13 16 16 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 17 C -0.10 -1.60 6.34 31.51 0.20 -1.40 16 18 C -0.07 -0.77 6.77 30.48 0.21 -0.56 16 19 C -0.15 -2.36 6.16 -19.60 -0.12 -2.49 16 20 C -0.07 -0.87 10.17 22.47 0.23 -0.64 16 21 C -0.16 -2.12 10.12 22.35 0.23 -1.89 16 22 C 0.08 1.54 11.18 84.71 0.95 2.48 16 23 N -0.50 -11.90 9.72 -182.97 -1.78 -13.68 16 24 C 0.09 1.94 6.59 42.72 0.28 2.22 16 25 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 26 H 0.37 17.28 5.53 -92.71 -0.51 16.76 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.42 10.83 8.01 -92.70 -0.74 10.08 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.48 7.05 -2.39 -0.02 1.46 16 34 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -77.63 320.57 0.78 -76.86 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.23 Total: 26.92 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 4.96 Total: 7.37 kcal Atomic # 7 Polarization: -132.95 SS G_CDS: -5.81 Total: -138.76 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.05 Total: -20.99 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.90 Total: 48.59 kcal Total: -77.63 0.78 -76.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132981170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.618 kcal (2) G-P(sol) polarization free energy of solvation -77.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds