Wall clock time and date at job start Mon Mar 30 2020 02:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00207 * 2 1 4 4 H 1.48496 * 109.47118 * 239.99873 * 3 2 1 5 5 H 1.48498 * 109.46788 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46991 * 119.99758 * 3 2 1 7 7 C 1.38812 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00152 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00301 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00023 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46839 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46839 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99916 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99976 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00341 * 179.97438 * 13 12 11 16 16 H 1.08994 * 110.87171 * 297.97746 * 15 13 12 17 17 C 1.54407 * 110.81135 * 174.48332 * 15 13 12 18 18 C 1.51057 * 105.15017 * 215.62068 * 17 15 13 19 19 C 1.38630 * 131.51432 * 197.01920 * 18 17 15 20 20 C 1.38214 * 119.09346 * 180.02562 * 19 18 17 21 21 N 1.31883 * 120.71031 * 0.02562 * 20 19 18 22 22 C 1.31840 * 121.79157 * 0.21079 * 21 20 19 23 23 C 1.38343 * 120.74987 * 359.55963 * 22 21 20 24 24 C 1.51186 * 131.26772 * 180.12763 * 23 22 21 25 25 H 0.96995 * 119.99488 * 359.97438 * 1 2 3 26 26 H 0.96995 * 119.99585 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47032 * 59.99994 * 10 9 7 28 28 H 1.08993 * 109.47229 * 299.99468 * 10 9 7 29 29 H 1.09002 * 109.46948 * 60.00389 * 11 10 9 30 30 H 1.08993 * 109.47140 * 299.99969 * 11 10 9 31 31 H 0.97003 * 120.00330 * 359.97438 * 12 11 10 32 32 H 1.08993 * 110.30893 * 334.54625 * 17 15 13 33 33 H 1.09008 * 110.30439 * 96.70703 * 17 15 13 34 34 H 1.07998 * 120.45349 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.64528 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.62512 * 179.72810 * 22 21 20 37 37 H 1.08998 * 110.29802 * 282.15477 * 24 23 22 38 38 H 1.09000 * 110.29757 * 44.19427 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0021 12 7 1.7963 -6.0885 0.0026 13 6 1.1224 -7.2557 0.0025 14 8 -0.0905 -7.2556 0.0024 15 6 1.8758 -8.5608 0.0024 16 1 2.4838 -8.6582 -0.8970 17 6 0.9059 -9.7542 0.1411 18 6 1.6454 -10.7685 0.9813 19 6 1.4341 -12.1236 1.1833 20 6 2.2840 -12.8185 2.0231 21 7 3.2837 -12.2058 2.6269 22 6 3.5108 -10.9177 2.4609 23 6 2.7047 -10.1584 1.6317 24 6 2.7469 -8.6909 1.2708 25 1 -0.4849 0.8400 0.0004 26 1 0.3556 -2.3880 0.0005 27 1 2.6841 -3.7141 0.8922 28 1 2.6853 -3.7150 -0.8878 29 1 0.4375 -4.7626 -0.8883 30 1 0.4368 -4.7614 0.8917 31 1 2.7663 -6.0885 0.0023 32 1 -0.0092 -9.4415 0.6438 33 1 0.6761 -10.1708 -0.8397 34 1 0.6165 -12.6294 0.6913 35 1 2.1278 -13.8745 2.1865 36 1 4.3370 -10.4506 2.9761 37 1 2.3301 -8.0905 2.0795 38 1 3.7710 -8.3824 1.0608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133877078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:47 Heat of formation + Delta-G solvation = 3.895698 kcal Electronic energy + Delta-G solvation = -19835.119513 eV Core-core repulsion = 16677.274331 eV Total energy + Delta-G solvation = -3157.845182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21955 -39.62343 -36.66035 -35.68038 -33.91462 -32.27006 -31.35106 -30.39245 -28.24367 -27.57283 -24.66834 -23.39396 -22.06921 -21.97268 -21.48201 -19.97492 -17.63007 -17.23082 -17.00694 -16.40411 -15.93665 -15.37405 -15.20124 -14.79058 -14.58968 -14.11818 -13.92666 -13.68129 -13.29092 -13.22419 -13.11970 -12.98135 -12.45942 -11.91498 -11.68578 -11.64907 -11.43696 -11.14283 -10.85741 -10.82122 -10.18801 -9.99157 -9.81974 -9.72451 -9.66600 -9.20776 -9.03939 -8.88602 -7.03005 -5.82397 -3.13452 0.79231 0.94421 2.57492 3.11304 3.40808 3.45152 3.46547 3.46923 3.86066 4.04057 4.22633 4.51066 4.54817 4.61120 4.63996 4.74051 4.99237 5.09789 5.13485 5.33463 5.39250 5.46756 5.47782 5.51059 5.59102 5.71407 5.72952 5.79288 5.91592 6.03064 6.10164 6.37701 6.42129 6.65488 6.68149 7.51694 7.62406 7.66336 8.20595 8.35225 9.46363 10.00765 10.35307 11.40080 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046591 B = 0.002613 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.832725 B =10711.271607 C =11135.584357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.109 3.891 12 N -0.720 5.720 13 C 0.520 3.480 14 O -0.538 6.538 15 C -0.110 4.110 16 H 0.111 0.889 17 C -0.070 4.070 18 C -0.049 4.049 19 C -0.160 4.160 20 C 0.095 3.905 21 N -0.486 5.486 22 C 0.114 3.886 23 C -0.149 4.149 24 C -0.068 4.068 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.401 0.599 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.091 0.909 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 -24.516 1.361 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.371 5.371 13 C 0.305 3.695 14 O -0.415 6.415 15 C -0.131 4.131 16 H 0.129 0.871 17 C -0.107 4.107 18 C -0.057 4.057 19 C -0.180 4.180 20 C -0.061 4.061 21 N -0.194 5.194 22 C -0.043 4.043 23 C -0.151 4.151 24 C -0.106 4.106 25 H 0.067 0.933 26 H 0.220 0.780 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.234 0.766 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.175 0.825 36 H 0.172 0.828 37 H 0.109 0.891 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.014 -24.841 1.910 25.630 hybrid contribution 0.062 1.400 -0.581 1.517 sum 6.076 -23.441 1.329 24.252 Atomic orbital electron populations 1.69657 1.05165 1.26013 1.57037 1.24789 0.95574 0.97853 1.02589 0.86217 0.78498 0.83257 0.77877 1.21171 1.21595 1.21160 1.19141 0.91000 0.83853 1.43669 0.91076 1.42183 1.06004 0.99564 1.89733 1.20754 0.93470 0.85685 0.98425 1.21611 0.95489 0.81659 1.02643 1.45924 1.10496 1.05959 1.74673 1.20185 0.88006 0.85000 0.76335 1.90722 1.13849 1.87434 1.49456 1.22027 0.97630 0.93064 1.00416 0.87078 1.20959 0.98532 0.91161 1.00097 1.20923 0.94969 0.93968 0.95855 1.21653 1.01687 0.93608 1.01008 1.22715 0.90461 1.00255 0.92700 1.67734 1.19067 1.10312 1.22296 1.22254 0.97957 0.89150 0.94958 1.21492 0.97359 0.97034 0.99199 1.20951 1.00888 0.92075 0.96732 0.93275 0.77999 0.95797 0.95796 0.91207 0.91208 0.76556 0.87598 0.89529 0.84772 0.82534 0.82783 0.89077 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.26 5.60 -59.91 -0.34 -18.59 16 10 C 0.14 2.74 6.37 -4.04 -0.03 2.71 16 11 C 0.11 1.79 5.79 -4.04 -0.02 1.77 16 12 N -0.72 -8.88 5.50 -60.29 -0.33 -9.21 16 13 C 0.52 6.61 7.06 -10.98 -0.08 6.53 16 14 O -0.54 -9.11 15.56 5.55 0.09 -9.02 16 15 C -0.11 -0.97 3.47 -90.29 -0.31 -1.28 16 16 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.07 -0.65 6.06 -26.97 -0.16 -0.81 16 18 C -0.05 -0.45 6.20 -104.22 -0.65 -1.10 16 19 C -0.16 -1.29 10.12 -39.45 -0.40 -1.69 16 20 C 0.10 0.80 11.19 -17.54 -0.20 0.61 16 21 N -0.49 -4.98 10.36 -13.22 -0.14 -5.12 16 22 C 0.11 1.04 11.19 -17.51 -0.20 0.84 16 23 C -0.15 -1.33 6.19 -104.26 -0.64 -1.98 16 24 C -0.07 -0.53 6.26 -26.90 -0.17 -0.70 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.39 10.25 7.67 -40.82 -0.31 9.94 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.40 3.74 8.47 -40.82 -0.35 3.39 16 32 H 0.11 1.17 7.07 -51.93 -0.37 0.80 16 33 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.09 0.78 7.89 -51.93 -0.41 0.37 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -33.85 324.73 -8.43 -42.28 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.21 Total: 7.50 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.10 Total: -2.46 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.08 Total: -60.27 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.85 -8.43 -42.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133877078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.176 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds