Wall clock time and date at job start Mon Mar 30 2020 02:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00207 * 2 1 4 4 H 1.48496 * 109.47118 * 239.99873 * 3 2 1 5 5 H 1.48498 * 109.46788 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46991 * 119.99758 * 3 2 1 7 7 C 1.38812 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00152 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00301 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00023 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46839 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46839 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99916 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99976 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00341 * 179.97438 * 13 12 11 16 16 H 1.08994 * 110.87171 * 297.97746 * 15 13 12 17 17 C 1.54407 * 110.81135 * 174.48332 * 15 13 12 18 18 C 1.51057 * 105.15017 * 215.62068 * 17 15 13 19 19 C 1.38630 * 131.51432 * 197.01920 * 18 17 15 20 20 C 1.38214 * 119.09346 * 180.02562 * 19 18 17 21 21 N 1.31883 * 120.71031 * 0.02562 * 20 19 18 22 22 C 1.31840 * 121.79157 * 0.21079 * 21 20 19 23 23 C 1.38343 * 120.74987 * 359.55963 * 22 21 20 24 24 C 1.51186 * 131.26772 * 180.12763 * 23 22 21 25 25 H 0.96995 * 119.99488 * 359.97438 * 1 2 3 26 26 H 0.96995 * 119.99585 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47032 * 59.99994 * 10 9 7 28 28 H 1.08993 * 109.47229 * 299.99468 * 10 9 7 29 29 H 1.09002 * 109.46948 * 60.00389 * 11 10 9 30 30 H 1.08993 * 109.47140 * 299.99969 * 11 10 9 31 31 H 0.97003 * 120.00330 * 359.97438 * 12 11 10 32 32 H 1.08993 * 110.30893 * 334.54625 * 17 15 13 33 33 H 1.09008 * 110.30439 * 96.70703 * 17 15 13 34 34 H 1.07998 * 120.45349 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.64528 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.62512 * 179.72810 * 22 21 20 37 37 H 1.08998 * 110.29802 * 282.15477 * 24 23 22 38 38 H 1.09000 * 110.29757 * 44.19427 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0021 12 7 1.7963 -6.0885 0.0026 13 6 1.1224 -7.2557 0.0025 14 8 -0.0905 -7.2556 0.0024 15 6 1.8758 -8.5608 0.0024 16 1 2.4838 -8.6582 -0.8970 17 6 0.9059 -9.7542 0.1411 18 6 1.6454 -10.7685 0.9813 19 6 1.4341 -12.1236 1.1833 20 6 2.2840 -12.8185 2.0231 21 7 3.2837 -12.2058 2.6269 22 6 3.5108 -10.9177 2.4609 23 6 2.7047 -10.1584 1.6317 24 6 2.7469 -8.6909 1.2708 25 1 -0.4849 0.8400 0.0004 26 1 0.3556 -2.3880 0.0005 27 1 2.6841 -3.7141 0.8922 28 1 2.6853 -3.7150 -0.8878 29 1 0.4375 -4.7626 -0.8883 30 1 0.4368 -4.7614 0.8917 31 1 2.7663 -6.0885 0.0023 32 1 -0.0092 -9.4415 0.6438 33 1 0.6761 -10.1708 -0.8397 34 1 0.6165 -12.6294 0.6913 35 1 2.1278 -13.8745 2.1865 36 1 4.3370 -10.4506 2.9761 37 1 2.3301 -8.0905 2.0795 38 1 3.7710 -8.3824 1.0608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133877078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:46 Heat of formation + Delta-G solvation = -20.075964 kcal Electronic energy + Delta-G solvation = -19836.159002 eV Core-core repulsion = 16677.274331 eV Total energy + Delta-G solvation = -3158.884671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.94187 -40.60704 -37.59788 -37.05751 -35.51595 -33.24843 -32.81381 -31.27842 -29.43889 -28.58995 -25.98464 -24.78301 -23.14616 -22.74676 -22.61171 -20.96300 -19.32344 -18.42605 -17.70340 -17.10852 -17.06556 -16.60865 -16.44786 -15.96229 -15.76515 -15.22173 -15.10231 -14.96731 -14.51970 -14.48675 -14.00503 -13.93278 -13.30244 -13.07790 -13.03326 -12.65264 -12.58288 -12.51549 -12.29442 -12.25630 -12.10770 -11.86325 -10.99810 -10.97468 -10.47821 -10.35843 -10.14883 -9.83729 -9.06278 -7.96686 -5.28016 0.16980 0.28044 1.48847 1.52406 1.55768 1.58508 2.04937 2.58059 2.82491 3.18003 3.32674 3.37596 3.63618 3.80443 3.90334 3.99628 4.03159 4.12602 4.15629 4.22969 4.31591 4.49690 4.54170 4.60109 4.68699 4.79836 4.89679 4.97583 5.03589 5.07383 5.09267 5.14777 5.38218 5.39275 5.49341 5.77114 6.24186 6.52471 7.02817 7.20684 7.30389 8.02827 8.25032 9.26817 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046591 B = 0.002613 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.832725 B =10711.271607 C =11135.584357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.084 0.916 9 N -0.748 5.748 10 C 0.149 3.851 11 C 0.127 3.873 12 N -0.706 5.706 13 C 0.520 3.480 14 O -0.584 6.584 15 C -0.099 4.099 16 H 0.141 0.859 17 C -0.069 4.069 18 C -0.063 4.063 19 C -0.161 4.161 20 C 0.087 3.913 21 N -0.511 5.511 22 C 0.103 3.897 23 C -0.154 4.154 24 C -0.063 4.063 25 H 0.252 0.748 26 H 0.373 0.627 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.419 0.581 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.181 0.819 36 H 0.172 0.828 37 H 0.082 0.918 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -25.511 1.130 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.102 0.898 9 N -0.392 5.392 10 C 0.022 3.978 11 C 0.002 3.998 12 N -0.359 5.359 13 C 0.308 3.692 14 O -0.464 6.464 15 C -0.120 4.120 16 H 0.158 0.842 17 C -0.106 4.106 18 C -0.071 4.071 19 C -0.181 4.181 20 C -0.069 4.069 21 N -0.220 5.220 22 C -0.053 4.053 23 C -0.156 4.156 24 C -0.101 4.101 25 H 0.061 0.939 26 H 0.205 0.795 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.256 0.744 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.172 0.828 35 H 0.198 0.802 36 H 0.189 0.811 37 H 0.100 0.900 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.307 -25.882 1.680 27.234 hybrid contribution -0.623 1.584 -0.499 1.773 sum 7.684 -24.298 1.181 25.512 Atomic orbital electron populations 1.69830 1.06843 1.26353 1.59143 1.25680 0.96433 1.01506 1.03398 0.85130 0.77107 0.78639 0.78376 1.20081 1.22410 1.20088 1.19618 0.91740 0.84861 1.41739 0.89844 1.42438 1.05763 1.01172 1.89797 1.20862 0.93596 0.84010 0.99347 1.21151 0.94820 0.82805 1.01060 1.45714 1.11293 1.04517 1.74347 1.20867 0.87595 0.86015 0.74773 1.90711 1.16154 1.88105 1.51418 1.22012 0.97456 0.90140 1.02351 0.84177 1.20905 0.97722 0.91488 1.00526 1.21050 0.95258 0.94522 0.96289 1.21917 1.02051 0.93397 1.00722 1.23159 0.89984 1.01436 0.92305 1.67759 1.20042 1.11011 1.23167 1.22569 0.98581 0.89050 0.95147 1.21605 0.97306 0.97519 0.99170 1.20955 1.02137 0.91338 0.95662 0.93920 0.79508 0.94352 0.94352 0.92877 0.92962 0.74367 0.89950 0.88401 0.82750 0.80210 0.81065 0.89975 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 3 Si 0.98 45.25 29.55 68.60 2.03 47.28 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.25 -13.52 9.99 84.03 0.84 -12.68 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 9 N -0.75 -37.38 5.60 -343.44 -1.92 -39.30 16 10 C 0.15 5.41 6.37 86.38 0.55 5.96 16 11 C 0.13 4.10 5.79 86.38 0.50 4.60 16 12 N -0.71 -16.28 5.50 -463.05 -2.55 -18.82 16 13 C 0.52 12.66 7.06 87.66 0.62 13.28 16 14 O -0.58 -19.99 15.56 -3.05 -0.05 -20.04 16 15 C -0.10 -1.53 3.47 -10.58 -0.04 -1.56 16 16 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 17 C -0.07 -1.19 6.06 30.44 0.18 -1.01 16 18 C -0.06 -1.06 6.20 -19.60 -0.12 -1.18 16 19 C -0.16 -2.35 10.12 22.36 0.23 -2.12 16 20 C 0.09 1.33 11.19 84.68 0.95 2.28 16 21 N -0.51 -9.78 10.36 -195.74 -2.03 -11.81 16 22 C 0.10 1.71 11.19 84.72 0.95 2.66 16 23 C -0.15 -2.47 6.19 -19.63 -0.12 -2.59 16 24 C -0.06 -0.82 6.26 30.48 0.19 -0.63 16 25 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 26 H 0.37 20.27 7.67 -92.71 -0.71 19.56 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.42 6.58 8.47 -92.71 -0.78 5.79 16 32 H 0.08 1.84 7.07 -2.39 -0.02 1.82 16 33 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 35 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 36 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.08 1.25 7.89 -2.39 -0.02 1.23 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -73.61 324.73 0.55 -73.06 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.41 Total: 25.89 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.19 Total: 3.04 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -6.22 Total: -129.24 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -73.61 0.55 -73.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133877078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.988 kcal (2) G-P(sol) polarization free energy of solvation -73.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds