Wall clock time and date at job start Mon Mar 30 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47510 * 270.00508 * 3 2 1 5 5 H 1.48499 * 109.46845 * 30.00345 * 3 2 1 6 6 H 1.48495 * 109.47038 * 150.00180 * 3 2 1 7 7 C 1.38805 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00342 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00340 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00528 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47540 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47540 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00360 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99857 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00187 * 179.97438 * 13 12 11 16 16 H 1.09004 * 110.71234 * 59.30097 * 15 13 12 17 17 C 1.54411 * 110.81175 * 182.67910 * 15 13 12 18 18 C 1.51355 * 105.00400 * 144.24614 * 17 15 13 19 19 C 1.38620 * 131.44099 * 163.02859 * 18 17 15 20 20 C 1.38220 * 119.09536 * 180.23289 * 19 18 17 21 21 N 1.31883 * 120.70995 * 359.97438 * 20 19 18 22 22 C 1.31829 * 121.79144 * 359.97438 * 21 20 19 23 23 C 1.38344 * 120.75150 * 0.02562 * 22 21 20 24 24 C 1.51183 * 131.26548 * 179.97438 * 23 22 21 25 25 H 0.97000 * 119.99601 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99925 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47235 * 59.99843 * 10 9 7 28 28 H 1.09001 * 109.47331 * 300.00053 * 10 9 7 29 29 H 1.08999 * 109.47222 * 60.00148 * 11 10 9 30 30 H 1.09006 * 109.47403 * 299.99889 * 11 10 9 31 31 H 0.97009 * 120.00057 * 0.02562 * 12 11 10 32 32 H 1.09004 * 110.30558 * 263.30639 * 17 15 13 33 33 H 1.08994 * 110.30640 * 25.46163 * 17 15 13 34 34 H 1.07995 * 120.45460 * 0.21327 * 19 18 17 35 35 H 1.07999 * 119.64395 * 179.97438 * 20 19 18 36 36 H 1.07993 * 119.62566 * 179.97438 * 22 21 20 37 37 H 1.09003 * 110.30019 * 78.14880 * 24 23 22 38 38 H 1.09006 * 110.38143 * 316.05089 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 7 6.3489 -3.4598 -0.0030 13 6 7.6967 -3.4598 -0.0047 14 8 8.3031 -2.4095 -0.0052 15 6 8.4503 -4.7650 -0.0047 16 1 8.1912 -5.3597 -0.8807 17 6 9.9733 -4.5191 0.0607 18 6 10.5161 -5.6471 0.9115 19 6 11.8025 -6.1378 1.0723 20 6 12.0138 -7.2021 1.9285 21 7 11.0090 -7.7469 2.5865 22 6 9.7736 -7.3049 2.4581 23 6 9.4859 -6.2431 1.6191 24 6 8.1799 -5.5538 1.2953 25 1 -0.4849 0.8401 0.0004 26 1 3.8647 -0.3620 -0.0014 27 1 3.8486 -3.0426 -0.8908 28 1 3.8493 -3.0422 0.8891 29 1 5.8804 -1.6193 0.8872 30 1 5.8791 -1.6200 -0.8928 31 1 5.8640 -4.3000 -0.0029 32 1 10.4053 -4.5534 -0.9395 33 1 10.1814 -3.5580 0.5306 34 1 12.6284 -5.6948 0.5357 35 1 13.0124 -7.5917 2.0601 36 1 8.9771 -7.7775 3.0134 37 1 7.9015 -4.8737 2.1004 38 1 7.3922 -6.2896 1.1332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133877079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:50 Heat of formation + Delta-G solvation = 7.920771 kcal Electronic energy + Delta-G solvation = -19889.851087 eV Core-core repulsion = 16732.180445 eV Total energy + Delta-G solvation = -3157.670642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25337 -39.70452 -36.72133 -35.84421 -34.03722 -32.29922 -31.52811 -30.52249 -28.45208 -27.84214 -24.73917 -23.23705 -22.09425 -21.93679 -21.54850 -20.03943 -17.94455 -17.43093 -17.05526 -16.44632 -16.04766 -15.52653 -15.25491 -14.89420 -14.44685 -14.18834 -13.92622 -13.83794 -13.67737 -13.33629 -13.18090 -12.70897 -12.52514 -11.96713 -11.73397 -11.72091 -11.57562 -11.55360 -10.99782 -10.88880 -10.20274 -10.03269 -9.81696 -9.71201 -9.66039 -9.24053 -9.12642 -8.95032 -7.34996 -5.83890 -3.21704 0.76142 0.91364 2.48423 3.01847 3.35118 3.38579 3.43054 3.43948 3.82566 3.99070 4.19093 4.47310 4.53328 4.54199 4.59946 4.70405 4.92427 5.05940 5.10093 5.26417 5.29857 5.35242 5.39660 5.47404 5.53975 5.56077 5.59784 5.67836 5.74124 5.89648 5.99599 6.29566 6.34741 6.52321 6.54393 7.41862 7.63572 7.89071 8.11169 8.34063 9.11490 9.83795 10.01744 11.33856 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.044729 B = 0.002766 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.848028 B =10119.119802 C =10492.134545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.149 3.851 11 C 0.106 3.894 12 N -0.719 5.719 13 C 0.521 3.479 14 O -0.539 6.539 15 C -0.110 4.110 16 H 0.111 0.889 17 C -0.070 4.070 18 C -0.049 4.049 19 C -0.160 4.160 20 C 0.096 3.904 21 N -0.485 5.485 22 C 0.114 3.886 23 C -0.149 4.149 24 C -0.068 4.068 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.091 0.909 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.993 -15.188 1.254 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.018 4.018 12 N -0.370 5.370 13 C 0.306 3.694 14 O -0.416 6.416 15 C -0.132 4.132 16 H 0.129 0.871 17 C -0.107 4.107 18 C -0.057 4.057 19 C -0.180 4.180 20 C -0.061 4.061 21 N -0.194 5.194 22 C -0.043 4.043 23 C -0.151 4.151 24 C -0.106 4.106 25 H 0.071 0.929 26 H 0.196 0.804 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.237 0.763 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.152 0.848 35 H 0.175 0.825 36 H 0.172 0.828 37 H 0.109 0.891 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 23.332 -15.194 1.816 27.902 hybrid contribution 0.117 1.520 -0.586 1.633 sum 23.449 -13.675 1.230 27.173 Atomic orbital electron populations 1.69701 1.05113 1.26028 1.56988 1.24680 0.95276 0.97346 1.01612 0.86541 0.79272 0.84764 0.77933 1.20907 1.21562 1.20187 1.18998 0.80194 0.94875 1.43873 0.89080 1.42533 1.04172 1.01838 1.91365 1.20727 0.87585 0.90289 0.99321 1.21629 0.92544 0.85075 1.02514 1.45884 1.06056 1.10340 1.74744 1.20210 0.82399 0.90627 0.76189 1.90714 1.68089 1.33253 1.49509 1.22036 0.95833 0.95011 1.00294 0.87074 1.21019 0.92336 0.97365 1.00028 1.20971 0.93412 0.95509 0.95853 1.21654 0.96657 0.98548 1.01115 1.22723 0.98288 0.92801 0.92289 1.67734 0.99873 1.29390 1.22373 1.22257 0.93979 0.92804 0.95229 1.21476 0.96897 0.97712 0.99004 1.20939 0.94800 0.98369 0.96444 0.92902 0.80384 0.94888 0.94917 0.91285 0.91269 0.76342 0.89506 0.87592 0.84776 0.82518 0.82751 0.89109 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.91 13.97 55.49 0.78 -28.13 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.89 21.94 27.73 -169.99 -4.71 17.22 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.25 -6.96 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.49 5.41 -59.92 -0.32 -17.82 16 10 C 0.15 2.64 6.37 -4.05 -0.03 2.62 16 11 C 0.11 1.60 5.79 -4.05 -0.02 1.58 16 12 N -0.72 -8.25 5.54 -60.30 -0.33 -8.59 16 13 C 0.52 6.22 7.05 -10.98 -0.08 6.14 16 14 O -0.54 -8.65 15.53 5.56 0.09 -8.56 16 15 C -0.11 -0.91 3.46 -90.27 -0.31 -1.23 16 16 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 17 C -0.07 -0.61 6.11 -26.82 -0.16 -0.78 16 18 C -0.05 -0.43 6.21 -104.07 -0.65 -1.08 16 19 C -0.16 -1.25 10.12 -39.45 -0.40 -1.65 16 20 C 0.10 0.78 11.19 -17.54 -0.20 0.59 16 21 N -0.49 -4.87 10.36 -13.22 -0.14 -5.00 16 22 C 0.11 1.01 11.19 -17.51 -0.20 0.82 16 23 C -0.15 -1.28 6.19 -104.26 -0.64 -1.93 16 24 C -0.07 -0.49 6.29 -26.89 -0.17 -0.66 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.36 8.32 5.53 -40.82 -0.23 8.09 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.40 3.45 8.47 -40.82 -0.35 3.10 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 1.12 7.02 -51.93 -0.36 0.75 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.09 0.73 7.89 -51.93 -0.41 0.32 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 321.64 15.07 4.85 4.85 Total: -1.00 -34.54 321.64 -8.07 -42.61 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.16 Total: 6.00 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -3.11 Total: -2.58 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.02 Total: -59.54 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.54 -8.07 -42.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133877079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.532 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds