Wall clock time and date at job start Mon Mar 30 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47510 * 270.00508 * 3 2 1 5 5 H 1.48499 * 109.46845 * 30.00345 * 3 2 1 6 6 H 1.48495 * 109.47038 * 150.00180 * 3 2 1 7 7 C 1.38805 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00342 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00340 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00528 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47540 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47540 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00360 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99857 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00187 * 179.97438 * 13 12 11 16 16 H 1.09004 * 110.71234 * 59.30097 * 15 13 12 17 17 C 1.54411 * 110.81175 * 182.67910 * 15 13 12 18 18 C 1.51355 * 105.00400 * 144.24614 * 17 15 13 19 19 C 1.38620 * 131.44099 * 163.02859 * 18 17 15 20 20 C 1.38220 * 119.09536 * 180.23289 * 19 18 17 21 21 N 1.31883 * 120.70995 * 359.97438 * 20 19 18 22 22 C 1.31829 * 121.79144 * 359.97438 * 21 20 19 23 23 C 1.38344 * 120.75150 * 0.02562 * 22 21 20 24 24 C 1.51183 * 131.26548 * 179.97438 * 23 22 21 25 25 H 0.97000 * 119.99601 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99925 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47235 * 59.99843 * 10 9 7 28 28 H 1.09001 * 109.47331 * 300.00053 * 10 9 7 29 29 H 1.08999 * 109.47222 * 60.00148 * 11 10 9 30 30 H 1.09006 * 109.47403 * 299.99889 * 11 10 9 31 31 H 0.97009 * 120.00057 * 0.02562 * 12 11 10 32 32 H 1.09004 * 110.30558 * 263.30639 * 17 15 13 33 33 H 1.08994 * 110.30640 * 25.46163 * 17 15 13 34 34 H 1.07995 * 120.45460 * 0.21327 * 19 18 17 35 35 H 1.07999 * 119.64395 * 179.97438 * 20 19 18 36 36 H 1.07993 * 119.62566 * 179.97438 * 22 21 20 37 37 H 1.09003 * 110.30019 * 78.14880 * 24 23 22 38 38 H 1.09006 * 110.38143 * 316.05089 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 7 6.3489 -3.4598 -0.0030 13 6 7.6967 -3.4598 -0.0047 14 8 8.3031 -2.4095 -0.0052 15 6 8.4503 -4.7650 -0.0047 16 1 8.1912 -5.3597 -0.8807 17 6 9.9733 -4.5191 0.0607 18 6 10.5161 -5.6471 0.9115 19 6 11.8025 -6.1378 1.0723 20 6 12.0138 -7.2021 1.9285 21 7 11.0090 -7.7469 2.5865 22 6 9.7736 -7.3049 2.4581 23 6 9.4859 -6.2431 1.6191 24 6 8.1799 -5.5538 1.2953 25 1 -0.4849 0.8401 0.0004 26 1 3.8647 -0.3620 -0.0014 27 1 3.8486 -3.0426 -0.8908 28 1 3.8493 -3.0422 0.8891 29 1 5.8804 -1.6193 0.8872 30 1 5.8791 -1.6200 -0.8928 31 1 5.8640 -4.3000 -0.0029 32 1 10.4053 -4.5534 -0.9395 33 1 10.1814 -3.5580 0.5306 34 1 12.6284 -5.6948 0.5357 35 1 13.0124 -7.5917 2.0601 36 1 8.9771 -7.7775 3.0134 37 1 7.9015 -4.8737 2.1004 38 1 7.3922 -6.2896 1.1332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133877079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:50 Heat of formation + Delta-G solvation = -16.978379 kcal Electronic energy + Delta-G solvation = -19890.930795 eV Core-core repulsion = 16732.180445 eV Total energy + Delta-G solvation = -3158.750350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93483 -40.61452 -37.68186 -37.10344 -35.55080 -33.50010 -32.86029 -31.36254 -29.72811 -28.63145 -25.89536 -24.59128 -23.15154 -22.74831 -22.63249 -20.97031 -19.82668 -18.41575 -17.71347 -17.17379 -17.06817 -16.66251 -16.35417 -15.93164 -15.81081 -15.54670 -15.17588 -14.81224 -14.55488 -14.50238 -14.01127 -13.93475 -13.49479 -13.26663 -13.17723 -12.73153 -12.63369 -12.53977 -12.29699 -12.24889 -12.08031 -11.83050 -11.03542 -11.00727 -10.48127 -10.35998 -10.15452 -9.84142 -9.36090 -8.05250 -5.40505 0.16563 0.28060 1.39128 1.40850 1.48087 1.54990 2.04037 2.46659 2.82270 3.18795 3.26625 3.30910 3.62565 3.72199 3.86037 3.89775 3.99089 4.02140 4.12338 4.20635 4.30183 4.49454 4.53989 4.56727 4.68788 4.79839 4.89473 4.97157 5.02287 5.06504 5.08639 5.11248 5.37247 5.38795 5.72809 5.76873 6.17838 6.51327 7.02634 7.03508 7.19291 7.78332 7.95278 9.15490 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.044729 B = 0.002766 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.848028 B =10119.119802 C =10492.134545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.061 4.061 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.254 1.254 7 C -0.236 4.236 8 H 0.064 0.936 9 N -0.760 5.760 10 C 0.149 3.851 11 C 0.121 3.879 12 N -0.708 5.708 13 C 0.522 3.478 14 O -0.582 6.582 15 C -0.100 4.100 16 H 0.139 0.861 17 C -0.069 4.069 18 C -0.063 4.063 19 C -0.161 4.161 20 C 0.087 3.913 21 N -0.511 5.511 22 C 0.102 3.898 23 C -0.154 4.154 24 C -0.063 4.063 25 H 0.259 0.741 26 H 0.366 0.634 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.419 0.581 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.180 0.820 36 H 0.171 0.829 37 H 0.082 0.918 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.847 -16.024 0.990 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.253 4.253 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.178 1.178 7 C -0.367 4.367 8 H 0.082 0.918 9 N -0.406 5.406 10 C 0.023 3.977 11 C -0.004 4.004 12 N -0.360 5.360 13 C 0.309 3.691 14 O -0.462 6.462 15 C -0.121 4.121 16 H 0.157 0.843 17 C -0.106 4.106 18 C -0.071 4.071 19 C -0.181 4.181 20 C -0.069 4.069 21 N -0.220 5.220 22 C -0.054 4.054 23 C -0.156 4.156 24 C -0.100 4.100 25 H 0.068 0.932 26 H 0.199 0.801 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.256 0.744 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.173 0.827 35 H 0.197 0.803 36 H 0.188 0.812 37 H 0.101 0.899 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 25.225 -16.094 1.554 29.962 hybrid contribution -0.421 1.656 -0.498 1.780 sum 24.804 -14.438 1.056 28.719 Atomic orbital electron populations 1.69870 1.07034 1.26800 1.59322 1.25496 0.96126 1.01255 1.02442 0.85448 0.78639 0.79782 0.78169 1.20376 1.22144 1.17816 1.19006 0.82232 0.93760 1.41726 0.91790 1.42570 1.02768 1.04026 1.91259 1.20847 0.88781 0.88161 0.99908 1.21230 0.90907 0.86511 1.01703 1.45711 1.06062 1.09852 1.74391 1.20807 0.82155 0.91369 0.74751 1.90703 1.68892 1.35188 1.51409 1.22027 0.94884 0.93168 1.02013 0.84290 1.20969 0.92813 0.96300 1.00506 1.21120 0.94066 0.95677 0.96236 1.21921 0.97041 0.98258 1.00883 1.23162 0.99007 0.92826 0.91938 1.67752 1.00651 1.30329 1.23298 1.22562 0.94225 0.93085 0.95537 1.21602 0.97412 0.97695 0.98930 1.20946 0.95092 0.98529 0.95475 0.93211 0.80074 0.93947 0.94023 0.92285 0.92069 0.74359 0.88325 0.89782 0.82716 0.80253 0.81157 0.89949 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.96 13.97 21.65 0.30 -61.66 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 3 Si 0.95 45.09 27.73 68.60 1.90 46.99 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.25 -10.92 6.52 99.48 0.65 -10.28 16 7 C -0.24 -13.15 10.47 84.03 0.88 -12.27 16 8 H 0.06 3.84 8.06 -2.91 -0.02 3.81 16 9 N -0.76 -34.28 5.41 -343.47 -1.86 -36.14 16 10 C 0.15 5.03 6.37 86.38 0.55 5.59 16 11 C 0.12 3.44 5.79 86.38 0.50 3.94 16 12 N -0.71 -14.57 5.54 -463.07 -2.56 -17.13 16 13 C 0.52 11.49 7.05 87.66 0.62 12.10 16 14 O -0.58 -18.20 15.53 -3.03 -0.05 -18.24 16 15 C -0.10 -1.40 3.46 -10.57 -0.04 -1.44 16 16 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 17 C -0.07 -1.09 6.11 30.54 0.19 -0.90 16 18 C -0.06 -1.00 6.21 -19.51 -0.12 -1.12 16 19 C -0.16 -2.23 10.12 22.36 0.23 -2.01 16 20 C 0.09 1.28 11.19 84.68 0.95 2.23 16 21 N -0.51 -9.59 10.36 -195.74 -2.03 -11.62 16 22 C 0.10 1.66 11.19 84.72 0.95 2.61 16 23 C -0.15 -2.37 6.19 -19.63 -0.12 -2.49 16 24 C -0.06 -0.76 6.29 30.49 0.19 -0.57 16 25 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.37 16.04 5.53 -92.71 -0.51 15.53 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.42 5.86 8.47 -92.70 -0.79 5.08 16 32 H 0.10 1.28 8.14 -2.38 -0.02 1.27 16 33 H 0.08 1.74 7.02 -2.39 -0.02 1.72 16 34 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.08 1.17 7.89 -2.39 -0.02 1.15 16 38 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -75.11 321.64 0.67 -74.44 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.27 Total: 20.78 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.24 Total: 2.59 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -6.14 Total: -126.55 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.05 Total: -18.24 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Total: -75.11 0.67 -74.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133877079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.459 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds