Wall clock time and date at job start Mon Mar 30 2020 01:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48504 * 109.46867 * 269.99895 * 3 2 1 5 5 H 1.48507 * 109.46983 * 29.99565 * 3 2 1 6 6 H 1.48498 * 109.47140 * 149.99826 * 3 2 1 7 7 C 1.38807 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00837 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00118 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00500 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47271 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46924 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99685 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00032 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99945 * 180.02562 * 13 12 11 16 16 H 1.09000 * 115.55924 * 34.29347 * 15 13 12 17 17 C 1.53002 * 117.49668 * 248.60941 * 15 13 12 18 18 C 1.53000 * 60.02940 * 252.51929 * 17 15 13 19 19 H 1.09007 * 117.49605 * 107.50099 * 18 17 15 20 20 C 1.50690 * 117.50063 * 252.49714 * 18 17 15 21 21 C 1.38675 * 120.42347 * 188.61208 * 20 18 17 22 22 C 1.38622 * 118.42400 * 180.02562 * 21 20 18 23 23 C 1.38226 * 119.16442 * 359.97438 * 22 21 20 24 24 N 1.31856 * 120.75895 * 0.02562 * 23 22 21 25 25 C 1.31887 * 121.72748 * 359.69818 * 24 23 22 26 26 H 0.97006 * 119.99731 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99831 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.46808 * 59.99644 * 10 9 7 29 29 H 1.09005 * 109.46807 * 300.00468 * 10 9 7 30 30 H 1.09005 * 109.47012 * 60.00041 * 11 10 9 31 31 H 1.09002 * 109.46909 * 299.99949 * 11 10 9 32 32 H 0.96998 * 120.00515 * 359.97438 * 12 11 10 33 33 H 1.09002 * 117.49918 * 145.01964 * 17 15 13 34 34 H 1.09002 * 117.49754 * 0.02562 * 17 15 13 35 35 H 1.08001 * 120.78566 * 0.02562 * 21 20 18 36 36 H 1.08006 * 120.42034 * 180.02562 * 22 21 20 37 37 H 1.07994 * 119.62264 * 179.97438 * 23 22 21 38 38 H 1.07994 * 119.61362 * 180.31329 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0024 12 7 6.3487 -3.4602 0.0017 13 6 7.6965 -3.4603 0.0022 14 8 8.3029 -2.4100 0.0026 15 6 8.4500 -4.7654 0.0009 16 1 7.9817 -5.5783 -0.5542 17 6 9.2314 -5.1311 1.2645 18 6 9.9792 -4.6986 0.0017 19 1 10.4400 -3.7107 0.0031 20 6 10.7228 -5.7615 -0.7651 21 6 11.5636 -5.4138 -1.8117 22 6 12.2269 -6.4251 -2.4891 23 6 12.0300 -7.7372 -2.1014 24 7 11.2227 -8.0309 -1.1012 25 6 10.5797 -7.0946 -0.4309 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3622 0.0014 28 1 3.8490 -3.0424 -0.8891 29 1 3.8482 -3.0428 0.8908 30 1 5.8789 -1.6203 0.8928 31 1 5.8803 -1.6195 -0.8872 32 1 5.8637 -4.3003 0.0010 33 1 9.2774 -6.1846 1.5406 34 1 9.2002 -4.4279 2.0967 35 1 11.6985 -4.3796 -2.0923 36 1 12.8898 -6.1908 -3.3090 37 1 12.5427 -8.5310 -2.6243 38 1 9.9306 -7.3734 0.3859 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134139352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:33 Heat of formation + Delta-G solvation = 37.397138 kcal Electronic energy + Delta-G solvation = -19516.799503 eV Core-core repulsion = 16360.407052 eV Total energy + Delta-G solvation = -3156.392450 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88619 -39.79805 -37.13332 -35.76976 -33.97136 -32.80676 -31.53182 -31.19166 -28.47657 -25.18305 -24.63160 -23.73424 -22.81062 -21.52926 -21.24239 -20.07491 -17.99369 -17.77983 -17.27588 -16.48073 -15.94361 -15.61347 -15.38243 -14.70551 -14.58549 -14.25242 -14.04880 -13.79812 -13.77117 -13.42405 -12.87039 -12.66954 -12.45000 -12.13490 -11.67735 -11.54334 -11.44988 -10.98243 -10.89524 -10.85688 -10.19089 -10.10505 -9.97137 -9.81747 -9.65123 -9.20150 -9.08829 -8.92856 -7.33571 -5.82666 -3.20349 0.65050 0.88432 2.38380 3.00782 3.31067 3.36056 3.39565 3.43810 3.67706 3.96587 4.22627 4.32459 4.44273 4.51915 4.54967 4.56933 4.67565 4.84193 4.87674 5.10502 5.24248 5.31629 5.40992 5.41462 5.55347 5.58892 5.61429 5.62562 5.77256 5.91585 5.93446 6.28513 6.33171 6.54568 6.57464 7.47767 7.57615 7.90559 8.17305 8.35310 9.12797 9.85091 10.03230 11.35111 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042423 B = 0.002550 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.858456 B =10977.492782 C =11141.207714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.148 3.852 11 C 0.107 3.893 12 N -0.717 5.717 13 C 0.540 3.460 14 O -0.542 6.542 15 C -0.175 4.175 16 H 0.127 0.873 17 C -0.142 4.142 18 C -0.083 4.083 19 H 0.130 0.870 20 C -0.102 4.102 21 C -0.066 4.066 22 C -0.169 4.169 23 C 0.091 3.909 24 N -0.482 5.482 25 C 0.098 3.902 26 H 0.261 0.739 27 H 0.363 0.637 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.403 0.597 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.265 -15.145 -1.783 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.017 4.017 12 N -0.368 5.368 13 C 0.326 3.674 14 O -0.420 6.420 15 C -0.196 4.196 16 H 0.145 0.855 17 C -0.179 4.179 18 C -0.102 4.102 19 H 0.148 0.852 20 C -0.104 4.104 21 C -0.092 4.092 22 C -0.189 4.189 23 C -0.066 4.066 24 N -0.190 5.190 25 C -0.059 4.059 26 H 0.071 0.929 27 H 0.196 0.804 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.237 0.763 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.173 0.827 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 25.310 -15.332 -1.553 29.632 hybrid contribution 0.293 1.735 -0.369 1.798 sum 25.603 -13.597 -1.922 29.053 Atomic orbital electron populations 1.69702 1.05107 1.26009 1.57031 1.24679 0.95282 0.97345 1.01642 0.86539 0.79271 0.84758 0.77933 1.20910 1.21556 1.20187 1.19005 0.80197 0.94884 1.43813 0.89076 1.42537 1.04171 1.01838 1.91369 1.20731 0.87582 0.90275 0.99345 1.21623 0.92527 0.85047 1.02469 1.45809 1.05943 1.10331 1.74671 1.19518 0.82246 0.89556 0.76071 1.90705 1.68275 1.33089 1.49925 1.22384 0.93720 0.98392 1.05087 0.85540 1.23157 1.00499 1.03133 0.91140 1.20980 0.90864 0.99255 0.99138 0.85195 1.20146 0.98387 0.94822 0.97073 1.21503 0.93846 1.00457 0.93374 1.22175 1.01268 0.94043 1.01403 1.22805 0.94748 0.95598 0.93409 1.67724 1.06957 1.37490 1.06865 1.22717 0.96943 0.88229 0.98017 0.92915 0.80388 0.94869 0.94890 0.91296 0.91313 0.76290 0.87223 0.87286 0.84511 0.84580 0.82717 0.82660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.89 22.10 27.74 -169.99 -4.71 17.39 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.78 5.41 -59.91 -0.32 -18.11 16 10 C 0.15 2.72 6.37 -4.04 -0.03 2.70 16 11 C 0.11 1.69 5.79 -4.04 -0.02 1.66 16 12 N -0.72 -8.92 5.56 -60.29 -0.33 -9.26 16 13 C 0.54 6.97 7.61 -10.98 -0.08 6.88 16 14 O -0.54 -9.10 16.26 5.56 0.09 -9.01 16 15 C -0.17 -1.56 5.84 -91.73 -0.54 -2.10 16 16 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.14 -1.03 9.57 -26.73 -0.26 -1.29 16 18 C -0.08 -0.71 5.58 -91.74 -0.51 -1.23 16 19 H 0.13 1.28 7.67 -51.93 -0.40 0.88 16 20 C -0.10 -0.85 5.62 -104.49 -0.59 -1.44 16 21 C -0.07 -0.51 9.89 -39.28 -0.39 -0.90 16 22 C -0.17 -1.13 10.11 -39.44 -0.40 -1.53 16 23 C 0.09 0.69 11.18 -17.55 -0.20 0.49 16 24 N -0.48 -4.59 10.36 -13.25 -0.14 -4.73 16 25 C 0.10 0.82 10.48 -17.55 -0.18 0.64 16 26 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.36 8.44 5.53 -40.82 -0.23 8.21 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 33 H 0.11 0.56 6.20 -51.93 -0.32 0.24 16 34 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 37 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.16 1.00 6.03 -52.49 -0.32 0.68 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -34.85 327.34 -8.16 -43.01 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.00 Total: 7.27 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -3.44 Total: -3.18 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.02 Total: -60.41 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.85 -8.16 -43.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134139352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.405 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds