Wall clock time and date at job start Mon Mar 30 2020 01:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48504 * 109.46867 * 269.99895 * 3 2 1 5 5 H 1.48507 * 109.46983 * 29.99565 * 3 2 1 6 6 H 1.48498 * 109.47140 * 149.99826 * 3 2 1 7 7 C 1.38807 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00837 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00118 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00500 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47271 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46924 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99685 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00032 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99945 * 180.02562 * 13 12 11 16 16 H 1.09000 * 115.55924 * 34.29347 * 15 13 12 17 17 C 1.53002 * 117.49668 * 248.60941 * 15 13 12 18 18 C 1.53000 * 60.02940 * 252.51929 * 17 15 13 19 19 H 1.09007 * 117.49605 * 107.50099 * 18 17 15 20 20 C 1.50690 * 117.50063 * 252.49714 * 18 17 15 21 21 C 1.38675 * 120.42347 * 188.61208 * 20 18 17 22 22 C 1.38622 * 118.42400 * 180.02562 * 21 20 18 23 23 C 1.38226 * 119.16442 * 359.97438 * 22 21 20 24 24 N 1.31856 * 120.75895 * 0.02562 * 23 22 21 25 25 C 1.31887 * 121.72748 * 359.69818 * 24 23 22 26 26 H 0.97006 * 119.99731 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99831 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.46808 * 59.99644 * 10 9 7 29 29 H 1.09005 * 109.46807 * 300.00468 * 10 9 7 30 30 H 1.09005 * 109.47012 * 60.00041 * 11 10 9 31 31 H 1.09002 * 109.46909 * 299.99949 * 11 10 9 32 32 H 0.96998 * 120.00515 * 359.97438 * 12 11 10 33 33 H 1.09002 * 117.49918 * 145.01964 * 17 15 13 34 34 H 1.09002 * 117.49754 * 0.02562 * 17 15 13 35 35 H 1.08001 * 120.78566 * 0.02562 * 21 20 18 36 36 H 1.08006 * 120.42034 * 180.02562 * 22 21 20 37 37 H 1.07994 * 119.62264 * 179.97438 * 23 22 21 38 38 H 1.07994 * 119.61362 * 180.31329 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0024 12 7 6.3487 -3.4602 0.0017 13 6 7.6965 -3.4603 0.0022 14 8 8.3029 -2.4100 0.0026 15 6 8.4500 -4.7654 0.0009 16 1 7.9817 -5.5783 -0.5542 17 6 9.2314 -5.1311 1.2645 18 6 9.9792 -4.6986 0.0017 19 1 10.4400 -3.7107 0.0031 20 6 10.7228 -5.7615 -0.7651 21 6 11.5636 -5.4138 -1.8117 22 6 12.2269 -6.4251 -2.4891 23 6 12.0300 -7.7372 -2.1014 24 7 11.2227 -8.0309 -1.1012 25 6 10.5797 -7.0946 -0.4309 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3622 0.0014 28 1 3.8490 -3.0424 -0.8891 29 1 3.8482 -3.0428 0.8908 30 1 5.8789 -1.6203 0.8928 31 1 5.8803 -1.6195 -0.8872 32 1 5.8637 -4.3003 0.0010 33 1 9.2774 -6.1846 1.5406 34 1 9.2002 -4.4279 2.0967 35 1 11.6985 -4.3796 -2.0923 36 1 12.8898 -6.1908 -3.3090 37 1 12.5427 -8.5310 -2.6243 38 1 9.9306 -7.3734 0.3859 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134139352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:33 Heat of formation + Delta-G solvation = 12.469633 kcal Electronic energy + Delta-G solvation = -19517.880440 eV Core-core repulsion = 16360.407052 eV Total energy + Delta-G solvation = -3157.473388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56157 -40.68984 -38.02033 -37.20700 -35.53146 -33.50128 -33.34113 -31.84416 -30.02516 -26.30805 -25.33999 -24.63993 -24.02728 -23.07315 -21.89739 -21.06159 -19.83351 -18.63376 -18.05430 -17.28341 -16.95134 -16.69854 -16.43067 -16.17438 -15.63439 -15.40460 -15.24470 -14.93595 -14.80948 -14.64634 -13.96710 -13.65725 -13.46852 -13.24499 -13.03293 -12.73112 -12.70915 -12.62101 -12.10235 -12.07016 -11.83883 -11.55751 -11.04985 -11.02623 -10.66258 -10.39281 -10.18221 -9.78022 -9.37870 -8.06297 -5.41892 0.09567 0.32536 1.38234 1.40171 1.43555 1.47435 2.00986 2.45755 2.66007 3.04476 3.25352 3.35597 3.61788 3.64657 3.74979 3.82664 3.89558 4.00409 4.02709 4.10868 4.14679 4.19675 4.37140 4.52739 4.58174 4.73367 4.90370 4.94912 4.99157 5.05948 5.07731 5.22399 5.33483 5.37397 5.71287 5.76540 6.16617 6.50046 7.01959 7.02100 7.17951 7.76403 7.93972 9.14415 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042423 B = 0.002550 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.858456 B =10977.492782 C =11141.207714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.061 4.061 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.254 1.254 7 C -0.238 4.238 8 H 0.064 0.936 9 N -0.759 5.759 10 C 0.150 3.850 11 C 0.122 3.878 12 N -0.708 5.708 13 C 0.539 3.461 14 O -0.585 6.585 15 C -0.175 4.175 16 H 0.149 0.851 17 C -0.125 4.125 18 C -0.085 4.085 19 H 0.113 0.887 20 C -0.109 4.109 21 C -0.080 4.080 22 C -0.167 4.167 23 C 0.082 3.918 24 N -0.509 5.509 25 C 0.090 3.910 26 H 0.259 0.741 27 H 0.367 0.633 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.418 0.582 33 H 0.137 0.863 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.162 0.838 37 H 0.177 0.823 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.380 -16.055 -1.895 31.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.253 4.253 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.178 1.178 7 C -0.369 4.369 8 H 0.081 0.919 9 N -0.406 5.406 10 C 0.023 3.977 11 C -0.003 4.003 12 N -0.359 5.359 13 C 0.326 3.674 14 O -0.466 6.466 15 C -0.196 4.196 16 H 0.166 0.834 17 C -0.162 4.162 18 C -0.104 4.104 19 H 0.131 0.869 20 C -0.111 4.111 21 C -0.105 4.105 22 C -0.186 4.186 23 C -0.075 4.075 24 N -0.218 5.218 25 C -0.066 4.066 26 H 0.068 0.932 27 H 0.200 0.800 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.255 0.745 33 H 0.155 0.845 34 H 0.122 0.878 35 H 0.162 0.838 36 H 0.179 0.821 37 H 0.194 0.806 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 27.463 -16.303 -1.663 31.981 hybrid contribution -0.329 1.903 -0.361 1.964 sum 27.134 -14.400 -2.023 30.785 Atomic orbital electron populations 1.69871 1.07025 1.26839 1.59218 1.25504 0.96153 1.01284 1.02352 0.85439 0.78642 0.79715 0.78188 1.20371 1.21990 1.17820 1.19006 0.82193 0.93790 1.41898 0.91851 1.42562 1.02789 1.03953 1.91275 1.20835 0.88743 0.88222 0.99854 1.21234 0.90928 0.86394 1.01702 1.45667 1.06019 1.09875 1.74380 1.20165 0.82046 0.90458 0.74695 1.90688 1.69036 1.35020 1.51822 1.22341 0.93572 0.96730 1.06991 0.83369 1.23290 0.98188 1.04565 0.90147 1.20876 0.90429 0.98785 1.00313 0.86892 1.20138 0.98811 0.94717 0.97420 1.21768 0.94018 1.01251 0.93512 1.22452 1.01032 0.93459 1.01654 1.23258 0.94418 0.96714 0.93092 1.67749 1.07953 1.38211 1.07880 1.22968 0.97157 0.88064 0.98425 0.93168 0.80037 0.94086 0.94032 0.92113 0.92181 0.74451 0.84486 0.87783 0.83846 0.82089 0.80556 0.81051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.33 13.97 21.65 0.30 -62.03 16 2 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.95 45.47 27.74 68.60 1.90 47.37 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.25 -11.03 6.52 99.48 0.65 -10.38 16 7 C -0.24 -13.43 10.47 84.03 0.88 -12.55 16 8 H 0.06 3.86 8.06 -2.91 -0.02 3.83 16 9 N -0.76 -35.02 5.41 -343.45 -1.86 -36.87 16 10 C 0.15 5.28 6.37 86.38 0.55 5.83 16 11 C 0.12 3.68 5.79 86.38 0.50 4.18 16 12 N -0.71 -16.33 5.56 -463.06 -2.57 -18.90 16 13 C 0.54 13.14 7.61 87.66 0.67 13.81 16 14 O -0.59 -19.36 16.26 -3.02 -0.05 -19.41 16 15 C -0.18 -2.77 5.84 -11.51 -0.07 -2.84 16 16 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 17 C -0.12 -1.52 9.57 30.60 0.29 -1.23 16 18 C -0.08 -1.34 5.58 -11.52 -0.06 -1.40 16 19 H 0.11 2.19 7.67 -2.38 -0.02 2.18 16 20 C -0.11 -1.64 5.62 -19.78 -0.11 -1.75 16 21 C -0.08 -1.11 9.89 22.47 0.22 -0.89 16 22 C -0.17 -1.90 10.11 22.36 0.23 -1.67 16 23 C 0.08 1.08 11.18 84.69 0.95 2.02 16 24 N -0.51 -8.83 10.36 -195.85 -2.03 -10.86 16 25 C 0.09 1.34 10.48 84.67 0.89 2.23 16 26 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 27 H 0.37 16.36 5.53 -92.71 -0.51 15.85 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.42 7.05 8.47 -92.71 -0.79 6.26 16 33 H 0.14 0.92 6.20 -2.39 -0.01 0.91 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 37 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.17 1.74 6.03 -2.91 -0.02 1.72 16 Total: -1.00 -75.61 327.34 0.83 -74.79 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.27 Total: 23.30 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.40 Total: 2.61 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -6.16 Total: -128.67 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.41 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Total: -75.61 0.83 -74.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134139352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.257 kcal (2) G-P(sol) polarization free energy of solvation -75.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds