Wall clock time and date at job start Mon Mar 30 2020 01:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34715 * 116.99824 * 2 1 4 4 O 1.21471 * 120.00025 * 359.72282 * 3 2 1 5 5 C 1.47721 * 119.99726 * 180.02562 * 3 2 1 6 6 C 1.39643 * 120.15239 * 354.47864 * 5 3 2 7 7 C 1.37924 * 119.85250 * 179.97438 * 6 5 3 8 8 C 1.38396 * 120.14735 * 0.02562 * 7 6 5 9 9 C 1.38341 * 120.30094 * 0.02562 * 8 7 6 10 10 C 1.37969 * 120.15534 * 359.69812 * 9 8 7 11 11 C 1.50703 * 120.08077 * 180.29643 * 10 9 8 12 12 N 1.46901 * 109.46753 * 106.61018 * 11 10 9 13 13 C 1.47480 * 111.00194 * 270.65597 * 12 11 10 14 14 C 1.53511 * 87.93327 * 221.29819 * 13 12 11 15 15 C 1.50696 * 114.34134 * 139.68229 * 14 13 12 16 16 H 1.08004 * 120.00288 * 266.07192 * 15 14 13 17 17 C 1.37874 * 120.00267 * 86.07910 * 15 14 13 18 18 N 1.31521 * 119.99677 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00390 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47247 * 59.99422 * 19 17 15 21 21 H 1.48494 * 109.47245 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46824 * 299.99627 * 19 17 15 23 23 C 1.47480 * 111.00013 * 174.68609 * 12 11 10 24 24 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46791 * 300.00033 * 1 2 3 26 26 H 1.08995 * 109.47545 * 59.99844 * 1 2 3 27 27 H 1.08001 * 120.07881 * 359.94969 * 6 5 3 28 28 H 1.07997 * 119.93035 * 180.02562 * 7 6 5 29 29 H 1.08000 * 119.84627 * 179.97438 * 8 7 6 30 30 H 1.08007 * 119.92555 * 179.97438 * 9 8 7 31 31 H 1.08997 * 109.46660 * 226.60719 * 11 10 9 32 32 H 1.08999 * 109.46713 * 346.61302 * 11 10 9 33 33 H 1.08999 * 113.47180 * 336.06622 * 13 12 11 34 34 H 1.09004 * 113.47345 * 106.52984 * 13 12 11 35 35 H 1.08996 * 114.17038 * 272.37443 * 14 13 12 36 36 H 0.97000 * 120.00023 * 179.97438 * 18 17 15 37 37 H 1.09002 * 113.47590 * 253.47236 * 23 12 11 38 38 H 1.09000 * 113.47489 * 23.87124 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0051 5 6 3.5388 1.2776 -0.0006 6 6 4.3022 0.1141 0.1151 7 6 5.6791 0.1933 0.1133 8 6 6.3044 1.4226 -0.0022 9 6 5.5542 2.5793 -0.1160 10 6 4.1761 2.5139 -0.1214 11 6 3.3606 3.7745 -0.2522 12 7 2.7740 3.8407 -1.5974 13 6 3.6825 4.5238 -2.5371 14 6 2.4540 5.2365 -3.1198 15 6 2.6788 6.6888 -3.4536 16 1 2.4295 7.4535 -2.7328 17 6 3.2026 7.0414 -4.6793 18 7 3.5065 6.1102 -5.5569 19 14 3.4818 8.8414 -5.0929 20 1 4.4292 9.4329 -4.1143 21 1 4.0497 8.9528 -6.4604 22 1 2.1889 9.5696 -5.0324 23 6 1.8665 4.9966 -1.7220 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.8155 -0.8458 0.2061 28 1 6.2707 -0.7058 0.2023 29 1 7.3829 1.4791 -0.0026 30 1 6.0485 3.5355 -0.2054 31 1 2.5640 3.7706 0.4917 32 1 4.0026 4.6407 -0.0927 33 1 4.3851 5.1988 -2.0486 34 1 4.1670 3.8476 -3.2416 35 1 1.9533 4.6846 -3.9152 36 1 3.8746 6.3582 -6.4194 37 1 0.8120 4.7212 -1.7356 38 1 2.0839 5.7973 -1.0152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137784350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:21 Heat of formation + Delta-G solvation = -15.028523 kcal Electronic energy + Delta-G solvation = -21172.588498 eV Core-core repulsion = 17981.629950 eV Total energy + Delta-G solvation = -3190.958549 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51010 -39.05366 -38.23436 -36.17073 -32.97687 -31.92755 -31.43085 -28.59495 -27.59273 -25.58434 -24.63467 -23.83153 -22.68819 -21.39990 -20.34472 -18.48941 -17.75627 -16.82380 -16.50557 -16.14593 -15.71797 -15.16517 -14.70875 -14.59688 -14.26176 -14.01881 -13.52093 -13.27219 -13.15390 -12.68474 -12.35515 -12.07990 -11.89482 -11.72076 -11.54931 -11.24724 -11.04592 -10.86035 -10.68855 -10.61251 -10.34255 -9.74277 -9.64588 -9.26509 -8.95938 -8.88021 -8.60725 -8.37444 -7.84605 -6.00907 -4.05211 0.84416 1.40221 2.75908 2.88309 3.32272 3.37180 3.39551 3.86026 4.43530 4.76524 4.85628 4.94767 4.99059 5.15845 5.25484 5.26513 5.31375 5.37052 5.49577 5.58041 5.77340 5.81496 5.97904 6.13356 6.22034 6.30599 6.40554 6.47394 6.49271 6.55891 6.72204 6.81754 6.85465 6.90636 7.21766 7.34335 7.78303 7.97605 8.03954 8.20257 8.43897 8.97880 9.59231 11.08696 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.004823 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.338094 B = 5803.581887 C = 6655.703454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.364 6.364 3 C 0.504 3.496 4 O -0.472 6.472 5 C -0.110 4.110 6 C -0.068 4.068 7 C -0.144 4.144 8 C -0.086 4.086 9 C -0.127 4.127 10 C 0.003 3.997 11 C 0.049 3.951 12 N -0.464 5.464 13 C 0.002 3.998 14 C 0.041 3.959 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.067 3.933 18 N -0.887 5.887 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.006 3.994 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.261 0.739 37 H 0.061 0.939 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -13.017 12.753 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.282 6.282 3 C 0.347 3.653 4 O -0.358 6.358 5 C -0.111 4.111 6 C -0.086 4.086 7 C -0.162 4.162 8 C -0.104 4.104 9 C -0.146 4.146 10 C 0.002 3.998 11 C -0.079 4.079 12 N -0.186 5.186 13 C -0.127 4.127 14 C 0.022 3.978 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.123 4.123 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.424 -13.425 12.461 18.372 hybrid contribution 0.489 1.723 -0.060 1.792 sum 1.913 -11.702 12.401 17.158 Atomic orbital electron populations 1.23187 0.76424 1.03151 1.02668 1.86504 1.23223 1.33362 1.85112 1.21113 0.89069 0.81389 0.73692 1.90860 1.66397 1.35099 1.43420 1.18893 0.89186 0.94295 1.08749 1.21399 0.93942 0.97601 0.95707 1.21063 0.94312 0.97921 1.02879 1.21365 1.00092 0.92454 0.96452 1.21094 0.92811 0.99158 1.01523 1.20038 0.93568 0.94182 0.92037 1.21813 0.97429 0.92130 0.96499 1.68873 1.10861 1.35424 1.03417 1.24130 0.97841 0.95701 0.95032 1.20084 0.91259 0.95666 0.90832 1.21009 1.42495 0.91463 1.00323 0.92531 1.25016 0.95240 0.97195 0.96142 1.69971 1.42985 1.32440 1.07060 0.86686 0.78554 0.85499 0.77413 1.20286 1.21272 1.20167 1.23880 0.97186 0.90716 1.00492 0.88506 0.92200 0.91641 0.84849 0.85546 0.85609 0.85237 0.88714 0.93939 0.93101 0.92145 0.92027 0.92882 0.92096 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.08 9.83 -40.53 -0.40 -5.48 16 3 C 0.50 8.32 7.83 34.61 0.27 8.59 16 4 O -0.47 -8.93 12.43 -19.24 -0.24 -9.17 16 5 C -0.11 -1.71 5.87 -104.98 -0.62 -2.33 16 6 C -0.07 -0.86 9.62 -39.17 -0.38 -1.23 16 7 C -0.14 -1.57 10.03 -39.64 -0.40 -1.97 16 8 C -0.09 -0.99 10.04 -39.49 -0.40 -1.38 16 9 C -0.13 -1.79 9.66 -39.64 -0.38 -2.17 16 10 C 0.00 0.04 5.45 -104.21 -0.57 -0.52 16 11 C 0.05 0.91 3.90 -4.97 -0.02 0.89 16 12 N -0.46 -10.09 5.26 -246.10 -1.29 -11.39 16 13 C 0.00 0.05 7.24 -7.55 -0.05 -0.01 16 14 C 0.04 1.06 3.76 -91.24 -0.34 0.72 16 15 C -0.51 -14.35 8.83 -34.44 -0.30 -14.66 16 16 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 17 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 18 N -0.89 -26.08 13.26 55.43 0.74 -25.35 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.01 0.13 7.28 -7.55 -0.05 0.08 16 24 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 27 H 0.13 1.41 7.62 -52.49 -0.40 1.01 16 28 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.69 7.99 -52.48 -0.42 1.28 16 31 H 0.09 1.78 6.24 -51.93 -0.32 1.46 16 32 H 0.04 0.77 7.19 -51.93 -0.37 0.39 16 33 H 0.05 1.20 7.43 -51.93 -0.39 0.82 16 34 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.06 1.78 8.11 -51.93 -0.42 1.35 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.05 1.13 7.87 -51.93 -0.41 0.72 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -31.47 322.56 -8.87 -40.34 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.24 Total: 0.58 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.27 Total: -10.72 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.56 Total: -36.73 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.64 Total: -14.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.47 -8.87 -40.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137784350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.313 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds