Wall clock time and date at job start Mon Mar 30 2020 01:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34715 * 116.99824 * 2 1 4 4 O 1.21471 * 120.00025 * 359.72282 * 3 2 1 5 5 C 1.47721 * 119.99726 * 180.02562 * 3 2 1 6 6 C 1.39643 * 120.15239 * 354.47864 * 5 3 2 7 7 C 1.37924 * 119.85250 * 179.97438 * 6 5 3 8 8 C 1.38396 * 120.14735 * 0.02562 * 7 6 5 9 9 C 1.38341 * 120.30094 * 0.02562 * 8 7 6 10 10 C 1.37969 * 120.15534 * 359.69812 * 9 8 7 11 11 C 1.50703 * 120.08077 * 180.29643 * 10 9 8 12 12 N 1.46901 * 109.46753 * 106.61018 * 11 10 9 13 13 C 1.47480 * 111.00194 * 270.65597 * 12 11 10 14 14 C 1.53511 * 87.93327 * 221.29819 * 13 12 11 15 15 C 1.50696 * 114.34134 * 139.68229 * 14 13 12 16 16 H 1.08004 * 120.00288 * 266.07192 * 15 14 13 17 17 C 1.37874 * 120.00267 * 86.07910 * 15 14 13 18 18 N 1.31521 * 119.99677 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00390 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47247 * 59.99422 * 19 17 15 21 21 H 1.48494 * 109.47245 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46824 * 299.99627 * 19 17 15 23 23 C 1.47480 * 111.00013 * 174.68609 * 12 11 10 24 24 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46791 * 300.00033 * 1 2 3 26 26 H 1.08995 * 109.47545 * 59.99844 * 1 2 3 27 27 H 1.08001 * 120.07881 * 359.94969 * 6 5 3 28 28 H 1.07997 * 119.93035 * 180.02562 * 7 6 5 29 29 H 1.08000 * 119.84627 * 179.97438 * 8 7 6 30 30 H 1.08007 * 119.92555 * 179.97438 * 9 8 7 31 31 H 1.08997 * 109.46660 * 226.60719 * 11 10 9 32 32 H 1.08999 * 109.46713 * 346.61302 * 11 10 9 33 33 H 1.08999 * 113.47180 * 336.06622 * 13 12 11 34 34 H 1.09004 * 113.47345 * 106.52984 * 13 12 11 35 35 H 1.08996 * 114.17038 * 272.37443 * 14 13 12 36 36 H 0.97000 * 120.00023 * 179.97438 * 18 17 15 37 37 H 1.09002 * 113.47590 * 253.47236 * 23 12 11 38 38 H 1.09000 * 113.47489 * 23.87124 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0051 5 6 3.5388 1.2776 -0.0006 6 6 4.3022 0.1141 0.1151 7 6 5.6791 0.1933 0.1133 8 6 6.3044 1.4226 -0.0022 9 6 5.5542 2.5793 -0.1160 10 6 4.1761 2.5139 -0.1214 11 6 3.3606 3.7745 -0.2522 12 7 2.7740 3.8407 -1.5974 13 6 3.6825 4.5238 -2.5371 14 6 2.4540 5.2365 -3.1198 15 6 2.6788 6.6888 -3.4536 16 1 2.4295 7.4535 -2.7328 17 6 3.2026 7.0414 -4.6793 18 7 3.5065 6.1102 -5.5569 19 14 3.4818 8.8414 -5.0929 20 1 4.4292 9.4329 -4.1143 21 1 4.0497 8.9528 -6.4604 22 1 2.1889 9.5696 -5.0324 23 6 1.8665 4.9966 -1.7220 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.8155 -0.8458 0.2061 28 1 6.2707 -0.7058 0.2023 29 1 7.3829 1.4791 -0.0026 30 1 6.0485 3.5355 -0.2054 31 1 2.5640 3.7706 0.4917 32 1 4.0026 4.6407 -0.0927 33 1 4.3851 5.1988 -2.0486 34 1 4.1670 3.8476 -3.2416 35 1 1.9533 4.6846 -3.9152 36 1 3.8746 6.3582 -6.4194 37 1 0.8120 4.7212 -1.7356 38 1 2.0839 5.7973 -1.0152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137784350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:20 Heat of formation + Delta-G solvation = -34.378027 kcal Electronic energy + Delta-G solvation = -21173.427556 eV Core-core repulsion = 17981.629950 eV Total energy + Delta-G solvation = -3191.797606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72895 -40.60821 -39.52470 -37.37331 -34.88065 -33.42624 -32.46234 -30.19470 -28.62064 -27.34911 -26.53844 -25.06021 -24.17809 -22.63710 -21.52798 -20.46069 -18.91983 -18.62133 -17.86003 -17.30840 -16.87667 -16.69760 -16.39742 -15.96270 -15.75689 -15.59753 -14.90120 -14.39023 -14.35982 -14.04949 -13.84560 -13.43186 -13.36335 -13.15491 -13.01733 -12.84770 -12.66328 -12.45427 -12.21399 -12.16606 -11.71607 -11.57186 -11.24346 -10.99941 -10.90077 -10.51684 -9.97840 -9.78690 -9.62158 -8.15699 -6.28011 -0.23119 0.38210 1.42208 1.44278 1.52329 1.62042 1.81088 2.41952 2.79189 3.12894 3.42946 3.70543 3.78974 3.96174 4.14916 4.21620 4.32464 4.34018 4.36500 4.39975 4.48473 4.54145 4.63180 4.69836 4.74610 4.85193 4.87437 4.93778 5.03991 5.19581 5.33260 5.35483 5.41047 5.49084 5.60204 5.66904 5.82175 5.93624 6.28209 6.40996 6.80527 6.84200 7.40389 8.94213 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.004823 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.338094 B = 5803.581887 C = 6655.703454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.361 6.361 3 C 0.500 3.500 4 O -0.509 6.509 5 C -0.134 4.134 6 C -0.066 4.066 7 C -0.131 4.131 8 C -0.077 4.077 9 C -0.139 4.139 10 C -0.028 4.028 11 C 0.056 3.944 12 N -0.463 5.463 13 C 0.020 3.980 14 C 0.024 3.976 15 C -0.532 4.532 16 H 0.059 0.941 17 C 0.016 3.984 18 N -0.923 5.923 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.270 1.270 23 C 0.020 3.980 24 H 0.136 0.864 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.154 0.846 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.133 0.867 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.059 0.941 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -14.052 13.838 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.279 6.279 3 C 0.345 3.655 4 O -0.398 6.398 5 C -0.136 4.136 6 C -0.084 4.084 7 C -0.149 4.149 8 C -0.095 4.095 9 C -0.158 4.158 10 C -0.028 4.028 11 C -0.072 4.072 12 N -0.185 5.185 13 C -0.109 4.109 14 C 0.005 3.995 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.184 4.184 18 N -0.561 5.561 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.195 1.195 23 C -0.109 4.109 24 H 0.154 0.846 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.172 0.828 28 H 0.185 0.815 29 H 0.178 0.822 30 H 0.150 0.850 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.031 -14.484 13.567 20.075 hybrid contribution -0.021 1.895 -0.349 1.927 sum 3.010 -12.589 13.217 18.500 Atomic orbital electron populations 1.23477 0.74813 1.05566 1.02105 1.86492 1.24805 1.32028 1.84526 1.21482 0.89725 0.81535 0.72749 1.90830 1.67258 1.36298 1.45440 1.19051 0.88940 0.95226 1.10356 1.21700 0.94771 0.97268 0.94637 1.21558 0.93817 0.99217 1.00264 1.21786 1.01737 0.91624 0.94351 1.21263 0.92021 1.00642 1.01864 1.19943 0.94482 0.93417 0.94995 1.21704 0.97511 0.93948 0.94039 1.68799 1.10005 1.34345 1.05373 1.23814 0.96964 0.95038 0.95083 1.20008 0.92964 0.95061 0.91438 1.21310 1.42615 0.92219 1.00849 0.92288 1.25856 0.94796 1.01838 0.95887 1.70106 1.43806 1.34734 1.07480 0.85569 0.78745 0.79783 0.77313 1.19232 1.20847 1.19456 1.23682 0.97286 0.91444 0.98511 0.84560 0.91920 0.93127 0.82807 0.81508 0.82159 0.84953 0.89368 0.93742 0.92951 0.93961 0.95744 0.92776 0.92281 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.36 -9.83 9.83 -56.25 -0.55 -10.38 16 3 C 0.50 16.64 7.83 70.33 0.55 17.19 16 4 O -0.51 -19.93 12.43 19.93 0.25 -19.69 16 5 C -0.13 -4.11 5.87 -20.10 -0.12 -4.23 16 6 C -0.07 -1.48 9.62 22.53 0.22 -1.26 16 7 C -0.13 -2.33 10.03 22.23 0.22 -2.11 16 8 C -0.08 -1.51 10.04 22.33 0.22 -1.29 16 9 C -0.14 -3.73 9.66 22.23 0.21 -3.51 16 10 C -0.03 -0.90 5.45 -19.59 -0.11 -1.01 16 11 C 0.06 2.11 3.90 85.56 0.33 2.45 16 12 N -0.46 -20.83 5.26 -932.53 -4.90 -25.73 16 13 C 0.02 1.00 7.24 83.57 0.61 1.61 16 14 C 0.02 1.33 3.76 -11.20 -0.04 1.29 16 15 C -0.53 -30.26 8.83 25.60 0.23 -30.03 16 16 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 17 C 0.02 0.88 5.46 84.65 0.46 1.35 16 18 N -0.92 -55.45 13.26 21.45 0.28 -55.17 16 19 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.02 0.92 7.28 83.57 0.61 1.53 16 24 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 27 H 0.15 2.76 7.62 -2.91 -0.02 2.73 16 28 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 29 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.13 3.34 7.99 -2.91 -0.02 3.32 16 31 H 0.09 3.44 6.24 -2.39 -0.01 3.43 16 32 H 0.04 1.63 7.19 -2.39 -0.02 1.61 16 33 H 0.05 2.53 7.43 -2.39 -0.02 2.51 16 34 H 0.04 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.02 1.49 8.11 -2.39 -0.02 1.47 16 36 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.06 2.64 7.87 -2.39 -0.02 2.62 16 Total: -1.00 -70.26 322.56 2.75 -67.51 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.05 Total: 13.60 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 4.59 Total: -16.12 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -4.62 Total: -80.90 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.31 Total: -30.07 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -70.26 2.75 -67.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137784350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.134 kcal (2) G-P(sol) polarization free energy of solvation -70.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds