Wall clock time and date at job start Mon Mar 30 2020 01:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48503 * 109.46897 * 270.00184 * 3 2 1 5 5 H 1.48501 * 109.47237 * 29.99464 * 3 2 1 6 6 H 1.48493 * 109.47471 * 149.99891 * 3 2 1 7 7 C 1.37873 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00393 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.50693 * 109.47461 * 179.97438 * 9 7 2 11 11 O 1.21278 * 119.99855 * 0.02562 * 10 9 7 12 12 N 1.34779 * 120.00359 * 180.02562 * 10 9 7 13 13 C 1.46888 * 120.52266 * 180.02562 * 12 10 9 14 14 C 1.53427 * 107.86994 * 224.97426 * 13 12 10 15 15 C 1.52887 * 108.80013 * 296.84513 * 14 13 12 16 16 C 1.50459 * 110.46131 * 51.00462 * 15 14 13 17 17 C 1.38635 * 119.14654 * 159.91916 * 16 15 14 18 18 C 1.38705 * 118.63559 * 180.02562 * 17 16 15 19 19 C 1.38118 * 119.22486 * 359.49840 * 18 17 16 20 20 C 1.50700 * 119.61050 * 180.32235 * 19 18 17 21 21 N 1.46896 * 109.47409 * 95.00423 * 20 19 18 22 22 N 1.31795 * 120.78150 * 0.30379 * 19 18 17 23 23 C 1.32671 * 121.82042 * 0.02562 * 22 19 18 24 24 H 0.96994 * 119.99797 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47218 * 59.99986 * 9 7 2 26 26 H 1.08992 * 109.47263 * 300.00336 * 9 7 2 27 27 H 1.09001 * 109.78455 * 105.37961 * 13 12 10 28 28 H 1.09000 * 109.82649 * 344.59390 * 13 12 10 29 29 H 1.09000 * 109.58424 * 177.04943 * 14 13 12 30 30 H 1.08997 * 109.69388 * 56.70068 * 14 13 12 31 31 H 1.09003 * 109.30516 * 290.70020 * 15 14 13 32 32 H 1.09007 * 109.30615 * 171.31080 * 15 14 13 33 33 H 1.08003 * 120.67846 * 359.77379 * 17 16 15 34 34 H 1.08002 * 120.39019 * 179.78370 * 18 17 16 35 35 H 1.09002 * 109.47585 * 215.00164 * 20 19 18 36 36 H 1.08998 * 109.47291 * 335.00117 * 20 19 18 37 37 H 1.00906 * 111.00432 * 56.04380 * 21 20 19 38 38 H 1.00893 * 111.00695 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0139 -2.6148 0.0013 11 8 3.2258 -3.5366 0.0022 12 7 5.3390 -2.8612 0.0016 13 6 5.8412 -4.2415 0.0024 14 6 6.9728 -4.3302 1.0347 15 6 8.1146 -3.4140 0.5940 16 6 7.5945 -2.0361 0.2864 17 6 8.4771 -0.9670 0.2807 18 6 7.9861 0.2987 -0.0037 19 6 6.6421 0.4540 -0.2814 20 6 6.1008 1.8242 -0.5987 21 7 6.0669 2.0121 -2.0552 22 7 5.8275 -0.5820 -0.2726 23 6 6.2568 -1.8072 0.0009 24 1 -0.4849 0.8400 0.0004 25 1 3.8753 -0.6796 0.8895 26 1 3.8745 -0.6809 -0.8904 27 1 6.2230 -4.4958 -0.9863 28 1 5.0386 -4.9268 0.2751 29 1 7.3317 -5.3576 1.0960 30 1 6.6055 -4.0126 2.0105 31 1 8.5858 -3.8286 -0.2972 32 1 8.8541 -3.3502 1.3924 33 1 9.5246 -1.1160 0.4973 34 1 8.6479 1.1522 -0.0124 35 1 5.0920 1.9184 -0.1967 36 1 6.7431 2.5816 -0.1494 37 1 5.5299 1.2837 -2.5015 38 1 5.7078 2.9243 -2.2939 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143202401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:46 Heat of formation + Delta-G solvation = 16.412910 kcal Electronic energy + Delta-G solvation = -21934.696658 eV Core-core repulsion = 18777.394263 eV Total energy + Delta-G solvation = -3157.302395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05792 -38.78663 -36.74010 -34.33571 -34.15876 -32.73963 -30.98723 -30.49647 -29.44276 -26.42810 -25.04466 -23.88154 -22.91021 -21.69705 -20.44521 -19.42520 -17.03270 -16.77406 -16.41608 -15.92372 -15.70300 -15.21931 -14.98823 -14.71678 -14.26583 -13.99709 -13.97741 -13.55026 -13.16761 -13.14864 -12.85659 -12.56512 -12.29115 -12.01488 -11.67466 -11.41597 -11.17654 -10.95844 -10.73736 -10.54408 -10.13522 -9.99307 -9.51246 -9.38824 -8.97251 -8.67338 -8.53692 -8.47562 -7.80958 -5.97743 -3.95664 1.17740 1.40005 2.99492 3.24191 3.32223 3.34911 3.39063 3.89978 4.35225 4.44838 4.59343 4.72952 4.78409 4.85440 4.92001 4.96850 5.16936 5.32958 5.34955 5.47707 5.53717 5.57565 5.67762 5.72442 5.75973 5.88922 6.05990 6.06806 6.11694 6.26597 6.60220 6.76710 7.03422 7.07704 7.23452 7.43778 7.53500 7.90135 8.15551 8.60123 8.88576 9.20028 9.61470 11.15218 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.008752 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.557744 B = 3198.427358 C = 4765.276520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.253 1.253 7 C -0.516 4.516 8 H 0.088 0.912 9 C -0.005 4.005 10 C 0.529 3.471 11 O -0.513 6.513 12 N -0.559 5.559 13 C 0.105 3.895 14 C -0.136 4.136 15 C -0.069 4.069 16 C -0.174 4.174 17 C -0.050 4.050 18 C -0.189 4.189 19 C 0.164 3.836 20 C 0.097 3.903 21 N -0.843 5.843 22 N -0.493 5.493 23 C 0.383 3.617 24 H 0.262 0.738 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.349 0.651 38 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.986 -0.654 0.491 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.699 3.301 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.178 1.178 7 C -0.555 4.555 8 H 0.106 0.894 9 C -0.044 4.044 10 C 0.322 3.678 11 O -0.385 6.385 12 N -0.287 5.287 13 C -0.018 4.018 14 C -0.174 4.174 15 C -0.107 4.107 16 C -0.180 4.180 17 C -0.076 4.076 18 C -0.211 4.211 19 C 0.024 3.976 20 C -0.034 4.034 21 N -0.373 5.373 22 N -0.207 5.207 23 C 0.153 3.847 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.161 0.839 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 20.148 -1.105 0.349 20.181 hybrid contribution 0.259 0.928 0.300 1.009 sum 20.406 -0.176 0.648 20.417 Atomic orbital electron populations 1.69908 1.06154 1.26594 1.51425 1.24922 0.94694 0.98642 0.94987 0.86981 0.80651 0.84072 0.78394 1.20402 1.21707 1.17848 1.21256 0.88559 0.95504 1.50164 0.89389 1.19819 0.97081 0.87458 1.00074 1.22081 0.78837 0.94593 0.72279 1.90583 1.53747 1.47484 1.46712 1.46294 1.06382 1.04886 1.71092 1.21798 0.97664 0.82852 0.99442 1.21892 0.95570 1.00369 0.99544 1.20310 0.97816 0.90912 1.01652 1.20074 0.92835 0.97385 1.07740 1.21241 0.99216 0.91545 0.95566 1.21687 0.96053 0.98003 1.05370 1.20888 0.89772 0.93739 0.93215 1.20865 1.01116 0.91490 0.89897 1.58802 1.62628 1.08311 1.07564 1.67808 1.37798 0.98100 1.17035 1.18155 0.86938 0.86851 0.92743 0.92811 0.93431 0.91314 0.91109 0.88000 0.89758 0.90878 0.90551 0.90343 0.84807 0.84966 0.92424 0.89504 0.83862 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.67 13.96 55.43 0.77 -27.90 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 21.31 26.32 -169.99 -4.47 16.84 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.25 -5.77 5.04 56.52 0.28 -5.49 16 7 C -0.52 -15.69 9.48 -34.44 -0.33 -16.02 16 8 H 0.09 3.00 7.00 -52.49 -0.37 2.64 16 9 C 0.00 -0.12 2.56 -29.04 -0.07 -0.20 16 10 C 0.53 12.60 7.66 -10.99 -0.08 12.51 16 11 O -0.51 -13.64 14.92 5.56 0.08 -13.56 16 12 N -0.56 -10.52 2.96 -114.75 -0.34 -10.86 16 13 C 0.10 1.51 6.36 -3.61 -0.02 1.48 16 14 C -0.14 -1.46 6.12 -26.57 -0.16 -1.63 16 15 C -0.07 -0.69 5.79 -28.06 -0.16 -0.85 16 16 C -0.17 -2.32 5.76 -104.43 -0.60 -2.92 16 17 C -0.05 -0.57 9.81 -39.26 -0.39 -0.95 16 18 C -0.19 -2.36 9.72 -39.45 -0.38 -2.75 16 19 C 0.16 2.55 6.29 -82.65 -0.52 2.03 16 20 C 0.10 1.40 7.09 -4.98 -0.04 1.37 16 21 N -0.84 -11.35 9.61 -11.41 -0.11 -11.46 16 22 N -0.49 -9.11 5.72 -8.55 -0.05 -9.16 16 23 C 0.38 6.63 7.10 -154.21 -1.09 5.54 16 24 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 25 H 0.05 1.22 6.56 -51.93 -0.34 0.88 16 26 H 0.07 1.72 6.07 -51.93 -0.32 1.40 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.57 7.13 -51.93 -0.37 1.20 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.06 0.98 5.16 -51.93 -0.27 0.71 16 36 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 37 H 0.35 5.19 8.99 -39.29 -0.35 4.83 16 38 H 0.34 3.94 9.08 -39.30 -0.36 3.58 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -35.44 305.08 -8.47 -43.91 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.00 Total: 8.02 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.95 Total: -0.43 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.28 Total: -59.38 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.47 Total: 16.84 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.44 -8.47 -43.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.325 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds