Wall clock time and date at job start Mon Mar 30 2020 02:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00183 * 2 1 4 4 H 1.48505 * 109.46903 * 269.99736 * 3 2 1 5 5 H 1.48501 * 109.47093 * 29.99624 * 3 2 1 6 6 H 1.48492 * 109.47296 * 149.99721 * 3 2 1 7 7 C 1.37878 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99973 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.50693 * 109.46876 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00505 * 0.02562 * 10 9 7 12 12 N 1.34785 * 120.00014 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00143 * 179.97438 * 12 10 9 14 14 H 1.09005 * 110.62404 * 31.89653 * 13 12 10 15 15 C 1.55139 * 110.85749 * 268.69135 * 13 12 10 16 16 C 1.54905 * 101.65239 * 205.89710 * 15 13 12 17 17 N 1.47844 * 104.79811 * 37.06599 * 16 15 13 18 18 C 1.39003 * 111.00083 * 213.64101 * 17 16 15 19 19 C 1.39140 * 119.70524 * 300.81960 * 18 17 16 20 20 C 1.38294 * 119.09671 * 179.97438 * 19 18 17 21 21 C 1.38883 * 118.50703 * 359.73677 * 20 19 18 22 22 C 1.38020 * 119.32966 * 0.54942 * 21 20 19 23 23 N 1.31981 * 120.85411 * 359.43490 * 22 21 20 24 24 C 1.47450 * 108.56586 * 335.90486 * 17 16 15 25 25 H 0.97006 * 119.99737 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46939 * 60.00248 * 9 7 2 27 27 H 1.08997 * 109.47446 * 300.00290 * 9 7 2 28 28 H 0.96994 * 119.99730 * 0.02562 * 12 10 9 29 29 H 1.09000 * 110.98851 * 323.98390 * 15 13 12 30 30 H 1.08997 * 110.99168 * 87.80403 * 15 13 12 31 31 H 1.09007 * 110.36998 * 278.24126 * 16 15 13 32 32 H 1.08997 * 110.37594 * 155.90132 * 16 15 13 33 33 H 1.08004 * 120.44998 * 0.02605 * 19 18 17 34 34 H 1.08003 * 120.74716 * 180.02562 * 20 19 18 35 35 H 1.08003 * 120.33805 * 180.26262 * 21 20 19 36 36 H 1.08002 * 119.57645 * 179.71548 * 22 21 20 37 37 H 1.08999 * 109.88119 * 120.39554 * 24 17 16 38 38 H 1.09000 * 109.88786 * 241.41760 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0027 11 8 3.4227 -3.4230 0.0030 12 7 1.7810 -4.9153 0.0044 13 6 2.7330 -6.0288 0.0048 14 1 3.6412 -5.7573 0.5429 15 6 3.0656 -6.4717 -1.4443 16 6 3.4668 -7.9531 -1.2345 17 7 2.5559 -8.4451 -0.1790 18 6 3.1883 -9.3850 0.6265 19 6 3.6965 -10.5493 0.0588 20 6 4.3238 -11.4756 0.8718 21 6 4.4273 -11.2033 2.2297 22 6 3.8952 -10.0307 2.7266 23 7 3.3018 -9.1644 1.9270 24 6 2.0936 -7.2930 0.6167 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6246 -2.5563 0.8919 28 1 0.8274 -5.0925 0.0045 29 1 2.1895 -6.3919 -2.0878 30 1 3.8981 -5.8951 -1.8474 31 1 4.5032 -8.0224 -0.9038 32 1 3.3224 -8.5194 -2.1545 33 1 3.6031 -10.7267 -1.0025 34 1 4.7283 -12.3881 0.4593 35 1 4.9151 -11.9041 2.8910 36 1 3.9694 -9.8170 3.7827 37 1 1.0071 -7.2202 0.5670 38 1 2.4104 -7.4072 1.6533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:20 Heat of formation + Delta-G solvation = 14.196597 kcal Electronic energy + Delta-G solvation = -20416.203017 eV Core-core repulsion = 17258.804516 eV Total energy + Delta-G solvation = -3157.398501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.98079 -39.12661 -37.79912 -34.12436 -32.90393 -32.77603 -31.60094 -29.22825 -29.17261 -27.72674 -24.01882 -23.57389 -23.14330 -21.25364 -20.72487 -19.70470 -17.92493 -16.71605 -16.38899 -16.20419 -16.03340 -15.59847 -14.81806 -14.62596 -14.34049 -14.25318 -13.89269 -13.57308 -13.09494 -12.86459 -12.81532 -12.40980 -12.12182 -12.04813 -11.80378 -11.50070 -11.10367 -10.84471 -10.74198 -10.57683 -10.24118 -9.95909 -9.92021 -9.56045 -9.25502 -8.65409 -8.48864 -8.39205 -8.30621 -6.04149 -4.03535 0.90437 1.05081 3.28105 3.36044 3.41194 3.48357 3.63955 3.70193 3.83899 4.29516 4.49275 4.52108 4.62680 4.75808 4.87948 4.89571 5.01437 5.08294 5.30495 5.32141 5.34485 5.47607 5.57084 5.67260 5.82804 5.89725 5.94619 6.00171 6.13148 6.34610 6.40954 6.48839 6.96415 7.06373 7.21581 7.35064 7.78637 7.97516 8.07298 8.45540 9.07349 9.24173 9.61501 11.08285 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.043186 B = 0.003102 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.207526 B = 9023.897751 C = 9167.997594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.507 4.507 8 H 0.075 0.925 9 C 0.005 3.995 10 C 0.516 3.484 11 O -0.546 6.546 12 N -0.738 5.738 13 C 0.130 3.870 14 H 0.093 0.907 15 C -0.142 4.142 16 C 0.052 3.948 17 N -0.469 5.469 18 C 0.311 3.689 19 C -0.185 4.185 20 C -0.055 4.055 21 C -0.206 4.206 22 C 0.127 3.873 23 N -0.519 5.519 24 C 0.024 3.976 25 H 0.261 0.739 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.397 0.603 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 -24.114 0.741 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.546 4.546 8 H 0.093 0.907 9 C -0.034 4.034 10 C 0.307 3.693 11 O -0.422 6.422 12 N -0.392 5.392 13 C 0.023 3.977 14 H 0.111 0.889 15 C -0.181 4.181 16 C -0.073 4.073 17 N -0.186 5.186 18 C 0.079 3.921 19 C -0.207 4.207 20 C -0.081 4.081 21 C -0.227 4.227 22 C -0.031 4.031 23 N -0.233 5.233 24 C -0.103 4.103 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.232 0.768 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.103 0.897 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.432 -23.224 0.824 23.865 hybrid contribution 0.709 0.193 -0.042 0.736 sum 6.141 -23.031 0.782 23.848 Atomic orbital electron populations 1.69963 1.06035 1.26885 1.51209 1.25010 0.94909 0.99477 0.95252 0.86432 0.79856 0.82673 0.78143 1.20630 1.21274 1.19682 1.21170 0.94247 0.89147 1.50041 0.90719 1.19237 0.94147 0.90508 0.99506 1.22050 0.91114 0.83370 0.72810 1.90530 1.18068 1.84613 1.48953 1.46257 1.09138 1.05505 1.78264 1.21915 0.94190 0.86507 0.95107 0.88899 1.23192 1.02990 0.93582 0.98381 1.23107 0.94162 0.95976 0.94090 1.60740 1.33194 1.12987 1.11715 1.20021 0.90092 0.92858 0.89108 1.21545 1.03004 0.94658 1.01538 1.21453 0.94917 0.98274 0.93484 1.21992 1.04523 0.99894 0.96309 1.22584 0.91700 0.89440 0.99351 1.67482 1.18696 1.32372 1.04745 1.23235 1.00944 0.86612 0.99528 0.92918 0.93426 0.93408 0.76838 0.89860 0.89724 0.92440 0.89213 0.84677 0.84800 0.84949 0.82695 0.89673 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.85 8.92 -34.44 -0.31 -15.16 16 8 H 0.07 2.28 6.75 -52.49 -0.35 1.93 16 9 C 0.01 0.13 5.46 -29.04 -0.16 -0.02 16 10 C 0.52 11.76 7.82 -10.98 -0.09 11.67 16 11 O -0.55 -14.24 15.10 5.55 0.08 -14.16 16 12 N -0.74 -12.70 5.18 -52.04 -0.27 -12.97 16 13 C 0.13 1.98 3.30 -66.11 -0.22 1.76 16 14 H 0.09 1.64 7.55 -51.93 -0.39 1.25 16 15 C -0.14 -1.86 6.77 -24.59 -0.17 -2.03 16 16 C 0.05 0.57 6.08 -2.30 -0.01 0.56 16 17 N -0.47 -5.70 5.20 -169.99 -0.88 -6.58 16 18 C 0.31 3.73 6.15 -155.02 -0.95 2.77 16 19 C -0.18 -1.76 9.38 -39.23 -0.37 -2.13 16 20 C -0.06 -0.43 10.17 -39.32 -0.40 -0.83 16 21 C -0.21 -1.61 10.10 -39.42 -0.40 -2.01 16 22 C 0.13 1.23 11.17 -17.57 -0.20 1.03 16 23 N -0.52 -6.47 7.95 -12.44 -0.10 -6.57 16 24 C 0.02 0.32 6.52 -2.84 -0.02 0.30 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.40 5.85 8.37 -40.82 -0.34 5.51 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.63 7.78 -51.92 -0.40 0.23 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.14 1.06 7.98 -52.48 -0.42 0.64 16 34 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.09 1.07 7.72 -51.93 -0.40 0.67 16 38 H 0.11 1.53 5.91 -51.93 -0.31 1.23 16 LS Contribution 320.13 15.07 4.82 4.82 Total: -1.00 -33.83 320.13 -9.15 -42.97 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.14 Total: 3.70 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -3.38 Total: -2.63 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.52 Total: -52.00 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.08 Total: -14.16 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.83 -9.15 -42.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.168 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds