Wall clock time and date at job start Mon Mar 30 2020 02:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00183 * 2 1 4 4 H 1.48505 * 109.46903 * 269.99736 * 3 2 1 5 5 H 1.48501 * 109.47093 * 29.99624 * 3 2 1 6 6 H 1.48492 * 109.47296 * 149.99721 * 3 2 1 7 7 C 1.37878 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99973 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.50693 * 109.46876 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00505 * 0.02562 * 10 9 7 12 12 N 1.34785 * 120.00014 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00143 * 179.97438 * 12 10 9 14 14 H 1.09005 * 110.62404 * 31.89653 * 13 12 10 15 15 C 1.55139 * 110.85749 * 268.69135 * 13 12 10 16 16 C 1.54905 * 101.65239 * 205.89710 * 15 13 12 17 17 N 1.47844 * 104.79811 * 37.06599 * 16 15 13 18 18 C 1.39003 * 111.00083 * 213.64101 * 17 16 15 19 19 C 1.39140 * 119.70524 * 300.81960 * 18 17 16 20 20 C 1.38294 * 119.09671 * 179.97438 * 19 18 17 21 21 C 1.38883 * 118.50703 * 359.73677 * 20 19 18 22 22 C 1.38020 * 119.32966 * 0.54942 * 21 20 19 23 23 N 1.31981 * 120.85411 * 359.43490 * 22 21 20 24 24 C 1.47450 * 108.56586 * 335.90486 * 17 16 15 25 25 H 0.97006 * 119.99737 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46939 * 60.00248 * 9 7 2 27 27 H 1.08997 * 109.47446 * 300.00290 * 9 7 2 28 28 H 0.96994 * 119.99730 * 0.02562 * 12 10 9 29 29 H 1.09000 * 110.98851 * 323.98390 * 15 13 12 30 30 H 1.08997 * 110.99168 * 87.80403 * 15 13 12 31 31 H 1.09007 * 110.36998 * 278.24126 * 16 15 13 32 32 H 1.08997 * 110.37594 * 155.90132 * 16 15 13 33 33 H 1.08004 * 120.44998 * 0.02605 * 19 18 17 34 34 H 1.08003 * 120.74716 * 180.02562 * 20 19 18 35 35 H 1.08003 * 120.33805 * 180.26262 * 21 20 19 36 36 H 1.08002 * 119.57645 * 179.71548 * 22 21 20 37 37 H 1.08999 * 109.88119 * 120.39554 * 24 17 16 38 38 H 1.09000 * 109.88786 * 241.41760 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0027 11 8 3.4227 -3.4230 0.0030 12 7 1.7810 -4.9153 0.0044 13 6 2.7330 -6.0288 0.0048 14 1 3.6412 -5.7573 0.5429 15 6 3.0656 -6.4717 -1.4443 16 6 3.4668 -7.9531 -1.2345 17 7 2.5559 -8.4451 -0.1790 18 6 3.1883 -9.3850 0.6265 19 6 3.6965 -10.5493 0.0588 20 6 4.3238 -11.4756 0.8718 21 6 4.4273 -11.2033 2.2297 22 6 3.8952 -10.0307 2.7266 23 7 3.3018 -9.1644 1.9270 24 6 2.0936 -7.2930 0.6167 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6246 -2.5563 0.8919 28 1 0.8274 -5.0925 0.0045 29 1 2.1895 -6.3919 -2.0878 30 1 3.8981 -5.8951 -1.8474 31 1 4.5032 -8.0224 -0.9038 32 1 3.3224 -8.5194 -2.1545 33 1 3.6031 -10.7267 -1.0025 34 1 4.7283 -12.3881 0.4593 35 1 4.9151 -11.9041 2.8910 36 1 3.9694 -9.8170 3.7827 37 1 1.0071 -7.2202 0.5670 38 1 2.4104 -7.4072 1.6533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:20 Heat of formation + Delta-G solvation = -9.152720 kcal Electronic energy + Delta-G solvation = -20417.215520 eV Core-core repulsion = 17258.804516 eV Total energy + Delta-G solvation = -3158.411004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.83917 -40.55843 -39.06203 -35.52453 -35.09182 -33.50403 -32.72670 -31.03910 -30.07926 -29.05129 -25.77922 -24.39653 -24.23373 -22.24931 -21.85946 -21.39709 -18.76163 -18.56547 -17.74487 -17.58433 -17.06834 -16.73172 -16.41147 -15.99971 -15.64009 -15.42195 -15.10719 -14.59809 -14.33390 -14.16184 -14.05405 -13.78753 -13.57853 -13.25744 -12.85170 -12.79822 -12.72403 -12.60132 -12.45058 -12.05874 -11.94510 -11.45887 -10.96955 -10.71024 -10.63234 -10.55736 -10.33067 -9.99071 -9.12842 -8.25755 -6.33040 0.19771 0.38952 1.39696 1.40643 1.53312 1.85558 2.22360 2.43627 2.59039 2.92432 3.09550 3.42583 3.48270 3.75634 3.97831 4.07551 4.13246 4.20609 4.24676 4.30213 4.38525 4.43180 4.68005 4.79385 4.83416 4.87518 4.96565 5.06575 5.06955 5.10004 5.26301 5.31954 5.54650 5.58480 5.62042 5.73795 6.04810 6.13599 6.69066 6.83095 7.04940 7.32951 7.49593 8.86459 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.043186 B = 0.003102 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.207526 B = 9023.897751 C = 9167.997594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.009 3.991 10 C 0.522 3.478 11 O -0.584 6.584 12 N -0.715 5.715 13 C 0.127 3.873 14 H 0.065 0.935 15 C -0.137 4.137 16 C 0.061 3.939 17 N -0.469 5.469 18 C 0.279 3.721 19 C -0.187 4.187 20 C -0.054 4.054 21 C -0.196 4.196 22 C 0.105 3.895 23 N -0.552 5.552 24 C 0.036 3.964 25 H 0.268 0.732 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.412 0.588 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.093 0.907 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.928 -26.059 0.368 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.073 0.927 9 C -0.031 4.031 10 C 0.311 3.689 11 O -0.464 6.464 12 N -0.368 5.368 13 C 0.020 3.980 14 H 0.083 0.917 15 C -0.176 4.176 16 C -0.064 4.064 17 N -0.186 5.186 18 C 0.048 3.952 19 C -0.209 4.209 20 C -0.080 4.080 21 C -0.216 4.216 22 C -0.052 4.052 23 N -0.267 5.267 24 C -0.092 4.092 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.249 0.751 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.169 0.831 34 H 0.186 0.814 35 H 0.181 0.819 36 H 0.188 0.812 37 H 0.111 0.889 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.830 -25.230 0.454 25.899 hybrid contribution 0.592 0.669 0.139 0.904 sum 6.422 -24.561 0.593 25.394 Atomic orbital electron populations 1.70033 1.07129 1.28110 1.51168 1.25795 0.95860 1.02755 0.94480 0.85455 0.78438 0.78580 0.78619 1.19569 1.19817 1.19982 1.21373 0.93659 0.91311 1.51214 0.92749 1.19072 0.94246 0.90802 0.98933 1.21487 0.89863 0.84564 0.72985 1.90509 1.19242 1.85460 1.51186 1.45922 1.10411 1.04397 1.76097 1.22006 0.92731 0.86322 0.96899 0.91712 1.23118 1.02857 0.95143 0.96525 1.23113 0.93864 0.94419 0.95036 1.60886 1.33866 1.12179 1.11711 1.20243 0.91914 0.93771 0.89257 1.21798 1.02465 0.94000 1.02654 1.21906 0.93844 0.98929 0.93325 1.22371 1.02977 0.99297 0.96988 1.23000 0.92038 0.90119 1.00041 1.67395 1.19893 1.33952 1.05456 1.23029 1.01097 0.86038 0.99023 0.92361 0.93770 0.93999 0.75103 0.89110 0.90942 0.92691 0.86394 0.83055 0.81418 0.81896 0.81214 0.88900 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.73 13.29 21.45 0.28 -54.45 16 2 C 0.01 0.56 5.46 84.65 0.46 1.03 16 3 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.54 -32.23 8.92 25.60 0.23 -32.00 16 8 H 0.05 3.43 6.75 -2.91 -0.02 3.41 16 9 C 0.01 0.47 5.46 29.10 0.16 0.63 16 10 C 0.52 24.47 7.82 87.65 0.69 25.16 16 11 O -0.58 -31.68 15.10 -3.05 -0.05 -31.73 16 12 N -0.72 -25.00 5.18 -436.95 -2.26 -27.26 16 13 C 0.13 3.93 3.30 46.17 0.15 4.08 16 14 H 0.06 2.40 7.55 -2.38 -0.02 2.38 16 15 C -0.14 -3.55 6.77 31.98 0.22 -3.34 16 16 C 0.06 1.25 6.08 86.77 0.53 1.78 16 17 N -0.47 -10.92 5.20 -691.73 -3.60 -14.51 16 18 C 0.28 6.40 6.15 133.07 0.82 7.21 16 19 C -0.19 -3.12 9.38 22.50 0.21 -2.91 16 20 C -0.05 -0.67 10.17 22.44 0.23 -0.44 16 21 C -0.20 -2.51 10.10 22.37 0.23 -2.28 16 22 C 0.10 1.90 11.17 84.62 0.95 2.85 16 23 N -0.55 -13.59 7.95 -193.26 -1.54 -15.13 16 24 C 0.04 0.95 6.52 86.64 0.56 1.52 16 25 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 26 H 0.04 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.41 12.05 8.37 -92.71 -0.78 11.27 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.16 7.78 -2.38 -0.02 1.14 16 32 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.15 1.92 7.98 -2.91 -0.02 1.90 16 34 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.09 2.28 7.72 -2.39 -0.02 2.26 16 38 H 0.10 2.79 5.91 -2.39 -0.01 2.78 16 Total: -1.00 -74.32 320.13 0.59 -73.73 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.29 Total: 18.13 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.43 Total: 3.28 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -7.11 Total: -111.35 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.05 Total: -31.73 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -74.32 0.59 -73.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.581 kcal (2) G-P(sol) polarization free energy of solvation -74.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds