Wall clock time and date at job start Mon Mar 30 2020 01:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00357 * 2 1 4 4 H 1.48507 * 109.46810 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47104 * 29.99185 * 3 2 1 6 6 H 1.48497 * 109.47646 * 149.99732 * 3 2 1 7 7 C 1.38814 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99962 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00195 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47319 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47317 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00064 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00314 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99586 * 180.02562 * 13 12 11 16 16 H 1.08994 * 110.73438 * 303.40119 * 15 13 12 17 17 C 1.54376 * 110.81707 * 180.02562 * 15 13 12 18 18 C 1.51230 * 105.20478 * 215.23818 * 17 15 13 19 19 C 1.38542 * 130.85832 * 197.11628 * 18 17 15 20 20 C 1.38580 * 118.62399 * 180.02562 * 19 18 17 21 21 C 1.38224 * 118.99060 * 0.02562 * 20 19 18 22 22 N 1.31695 * 120.80058 * 359.97438 * 21 20 19 23 23 C 1.32287 * 122.03034 * 0.02562 * 22 21 20 24 24 C 1.51477 * 130.14190 * 179.97438 * 23 22 21 25 25 H 0.96994 * 119.99660 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99714 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47132 * 59.99622 * 10 9 7 28 28 H 1.09000 * 109.46709 * 299.99863 * 10 9 7 29 29 H 1.08998 * 109.47236 * 59.99798 * 11 10 9 30 30 H 1.09000 * 109.47209 * 299.99668 * 11 10 9 31 31 H 0.97003 * 119.99938 * 0.02562 * 12 11 10 32 32 H 1.09002 * 110.31452 * 334.19889 * 17 15 13 33 33 H 1.09004 * 110.31174 * 96.27994 * 17 15 13 34 34 H 1.07998 * 120.65489 * 0.07246 * 19 18 17 35 35 H 1.07996 * 120.50633 * 179.97438 * 20 19 18 36 36 H 1.07995 * 119.60235 * 180.02562 * 21 20 19 37 37 H 1.09008 * 110.29475 * 43.86850 * 24 23 22 38 38 H 1.08999 * 110.29752 * 281.74449 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1914 0.0011 12 7 6.3488 -3.4601 0.0017 13 6 7.6966 -3.4601 0.0013 14 8 8.3031 -2.4098 0.0009 15 6 8.4500 -4.7653 0.0013 16 1 8.1572 -5.3798 0.8525 17 6 9.9740 -4.5190 0.0015 18 6 10.5558 -5.6325 -0.8405 19 6 11.8525 -6.1095 -0.9416 20 6 12.1079 -7.1596 -1.8091 21 6 11.0638 -7.6926 -2.5415 22 7 9.8425 -7.2147 -2.4209 23 6 9.5583 -6.2137 -1.6040 24 6 8.2376 -5.5270 -1.3237 25 1 -0.4849 0.8400 -0.0004 26 1 3.8646 -0.3622 0.0007 27 1 3.8491 -3.0423 -0.8891 28 1 3.8484 -3.0426 0.8909 29 1 5.8797 -1.6198 0.8910 30 1 5.8797 -1.6199 -0.8889 31 1 5.8638 -4.3002 0.0016 32 1 10.2008 -3.5502 -0.4434 33 1 10.3653 -4.5691 1.0176 34 1 12.6474 -5.6722 -0.3557 35 1 13.1076 -7.5549 -1.9121 36 1 11.2516 -8.5114 -3.2202 37 1 7.4435 -6.2655 -1.2128 38 1 7.9965 -4.8292 -2.1256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149180604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:14 Heat of formation + Delta-G solvation = 9.148755 kcal Electronic energy + Delta-G solvation = -19885.841381 eV Core-core repulsion = 16728.223989 eV Total energy + Delta-G solvation = -3157.617392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.22751 -39.66039 -36.44072 -35.74455 -34.00926 -32.99032 -31.50846 -30.13048 -28.26550 -27.99686 -24.77079 -23.20479 -22.20132 -21.80726 -21.52004 -20.00281 -17.91113 -17.37945 -16.97736 -16.69134 -15.94931 -15.48339 -15.16100 -14.90998 -14.39232 -14.16999 -13.82715 -13.71431 -13.45513 -13.26009 -13.17698 -12.76953 -12.64035 -12.07530 -11.77861 -11.67874 -11.53555 -11.52264 -10.97011 -10.86988 -10.18376 -10.09651 -9.92668 -9.64300 -9.63170 -9.10352 -9.03541 -8.92567 -7.32783 -5.81925 -3.19557 0.73849 0.94462 2.49457 3.04778 3.36765 3.40250 3.41805 3.44573 3.57831 4.07431 4.29225 4.50526 4.55637 4.57784 4.58205 4.79755 4.87784 4.97763 5.20586 5.29647 5.34307 5.40632 5.41910 5.42817 5.58097 5.60748 5.62720 5.73747 5.82619 5.88627 5.92909 6.32533 6.35167 6.55387 6.57552 7.45093 7.65814 7.91331 8.14080 8.36078 9.13648 9.85909 10.03980 11.35883 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045612 B = 0.002761 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.723159 B =10138.447786 C =10499.204545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.148 3.852 11 C 0.106 3.894 12 N -0.719 5.719 13 C 0.522 3.478 14 O -0.538 6.538 15 C -0.109 4.109 16 H 0.112 0.888 17 C -0.065 4.065 18 C -0.144 4.144 19 C -0.065 4.065 20 C -0.174 4.174 21 C 0.100 3.900 22 N -0.478 5.478 23 C 0.121 3.879 24 C -0.060 4.060 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.403 0.597 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.158 0.842 37 H 0.096 0.904 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.924 -15.804 -1.261 29.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.020 3.980 11 C -0.018 4.018 12 N -0.370 5.370 13 C 0.307 3.693 14 O -0.415 6.415 15 C -0.131 4.131 16 H 0.130 0.870 17 C -0.103 4.103 18 C -0.146 4.146 19 C -0.090 4.090 20 C -0.194 4.194 21 C -0.057 4.057 22 N -0.187 5.187 23 C -0.017 4.017 24 C -0.098 4.098 25 H 0.071 0.929 26 H 0.196 0.804 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.237 0.763 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.115 0.885 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 24.424 -15.482 -1.758 28.970 hybrid contribution 1.038 1.085 0.471 1.574 sum 25.462 -14.397 -1.287 29.278 Atomic orbital electron populations 1.69699 1.05114 1.26008 1.57045 1.24681 0.95275 0.97342 1.01650 0.86540 0.79268 0.84763 0.77932 1.20913 1.21585 1.20179 1.19006 0.80208 0.94876 1.43792 0.89074 1.42534 1.04166 1.01849 1.91367 1.20735 0.87599 0.90271 0.99355 1.21629 0.92536 0.85070 1.02521 1.45887 1.06051 1.10377 1.74680 1.20147 0.82386 0.90536 0.76225 1.90712 1.68073 1.33183 1.49489 1.21980 0.96185 0.95173 0.99751 0.86978 1.20866 0.91898 0.97488 1.00007 1.21495 0.94553 0.98712 0.99829 1.21023 0.95669 0.95195 0.97154 1.22079 1.00995 0.98037 0.98265 1.22644 0.87276 0.98430 0.97382 1.66846 1.22689 1.10874 1.18256 1.21801 0.96210 0.91720 0.91987 1.20895 0.93933 0.98495 0.96518 0.92920 0.80388 0.94834 0.94906 0.91262 0.91259 0.76287 0.87763 0.89746 0.84886 0.84514 0.82527 0.88550 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.89 22.06 27.74 -169.99 -4.71 17.35 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 7 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.75 -17.64 5.41 -59.91 -0.32 -17.97 16 10 C 0.15 2.67 6.37 -4.04 -0.03 2.65 16 11 C 0.11 1.63 5.79 -4.05 -0.02 1.60 16 12 N -0.72 -8.47 5.56 -60.30 -0.33 -8.81 16 13 C 0.52 6.37 7.06 -10.98 -0.08 6.29 16 14 O -0.54 -8.70 15.51 5.56 0.09 -8.61 16 15 C -0.11 -0.95 3.46 -90.37 -0.31 -1.27 16 16 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 17 C -0.06 -0.59 6.09 -26.90 -0.16 -0.75 16 18 C -0.14 -1.34 6.17 -104.19 -0.64 -1.98 16 19 C -0.06 -0.50 10.16 -39.34 -0.40 -0.90 16 20 C -0.17 -1.21 10.12 -39.46 -0.40 -1.61 16 21 C 0.10 0.83 11.18 -17.62 -0.20 0.63 16 22 N -0.48 -5.24 10.35 -9.13 -0.09 -5.33 16 23 C 0.12 1.25 7.32 -81.95 -0.60 0.65 16 24 C -0.06 -0.53 6.31 -26.82 -0.17 -0.70 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.36 8.38 5.53 -40.82 -0.23 8.15 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.40 3.61 8.47 -40.82 -0.35 3.27 16 32 H 0.10 1.12 6.99 -51.93 -0.36 0.76 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 36 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.10 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.10 0.91 7.89 -51.93 -0.41 0.50 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -34.87 321.69 -8.19 -43.05 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.16 Total: 6.19 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.26 Total: -2.43 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.02 Total: -60.40 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.87 -8.19 -43.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149180604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.202 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds