Wall clock time and date at job start Mon Mar 30 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00357 * 2 1 4 4 H 1.48507 * 109.46810 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47104 * 29.99185 * 3 2 1 6 6 H 1.48497 * 109.47646 * 149.99732 * 3 2 1 7 7 C 1.38814 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99962 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00195 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47319 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47317 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00064 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00314 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99586 * 180.02562 * 13 12 11 16 16 H 1.08994 * 110.73438 * 303.40119 * 15 13 12 17 17 C 1.54376 * 110.81707 * 180.02562 * 15 13 12 18 18 C 1.51230 * 105.20478 * 215.23818 * 17 15 13 19 19 C 1.38542 * 130.85832 * 197.11628 * 18 17 15 20 20 C 1.38580 * 118.62399 * 180.02562 * 19 18 17 21 21 C 1.38224 * 118.99060 * 0.02562 * 20 19 18 22 22 N 1.31695 * 120.80058 * 359.97438 * 21 20 19 23 23 C 1.32287 * 122.03034 * 0.02562 * 22 21 20 24 24 C 1.51477 * 130.14190 * 179.97438 * 23 22 21 25 25 H 0.96994 * 119.99660 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99714 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47132 * 59.99622 * 10 9 7 28 28 H 1.09000 * 109.46709 * 299.99863 * 10 9 7 29 29 H 1.08998 * 109.47236 * 59.99798 * 11 10 9 30 30 H 1.09000 * 109.47209 * 299.99668 * 11 10 9 31 31 H 0.97003 * 119.99938 * 0.02562 * 12 11 10 32 32 H 1.09002 * 110.31452 * 334.19889 * 17 15 13 33 33 H 1.09004 * 110.31174 * 96.27994 * 17 15 13 34 34 H 1.07998 * 120.65489 * 0.07246 * 19 18 17 35 35 H 1.07996 * 120.50633 * 179.97438 * 20 19 18 36 36 H 1.07995 * 119.60235 * 180.02562 * 21 20 19 37 37 H 1.09008 * 110.29475 * 43.86850 * 24 23 22 38 38 H 1.08999 * 110.29752 * 281.74449 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1914 0.0011 12 7 6.3488 -3.4601 0.0017 13 6 7.6966 -3.4601 0.0013 14 8 8.3031 -2.4098 0.0009 15 6 8.4500 -4.7653 0.0013 16 1 8.1572 -5.3798 0.8525 17 6 9.9740 -4.5190 0.0015 18 6 10.5558 -5.6325 -0.8405 19 6 11.8525 -6.1095 -0.9416 20 6 12.1079 -7.1596 -1.8091 21 6 11.0638 -7.6926 -2.5415 22 7 9.8425 -7.2147 -2.4209 23 6 9.5583 -6.2137 -1.6040 24 6 8.2376 -5.5270 -1.3237 25 1 -0.4849 0.8400 -0.0004 26 1 3.8646 -0.3622 0.0007 27 1 3.8491 -3.0423 -0.8891 28 1 3.8484 -3.0426 0.8909 29 1 5.8797 -1.6198 0.8910 30 1 5.8797 -1.6199 -0.8889 31 1 5.8638 -4.3002 0.0016 32 1 10.2008 -3.5502 -0.4434 33 1 10.3653 -4.5691 1.0176 34 1 12.6474 -5.6722 -0.3557 35 1 13.1076 -7.5549 -1.9121 36 1 11.2516 -8.5114 -3.2202 37 1 7.4435 -6.2655 -1.2128 38 1 7.9965 -4.8292 -2.1256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149180604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:13 Heat of formation + Delta-G solvation = -16.196785 kcal Electronic energy + Delta-G solvation = -19886.940446 eV Core-core repulsion = 16728.223989 eV Total energy + Delta-G solvation = -3158.716457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93259 -40.59704 -37.60057 -36.85165 -35.54645 -33.64401 -33.42777 -31.03401 -29.52397 -28.79544 -25.92689 -24.60659 -23.13661 -22.81726 -22.58615 -20.96143 -19.82386 -18.40086 -17.66937 -17.35832 -17.02665 -16.61999 -16.35458 -15.92706 -15.77827 -15.54325 -15.17305 -14.80498 -14.53472 -14.23216 -13.95283 -13.81565 -13.57104 -13.42313 -13.17331 -12.73014 -12.69141 -12.57440 -12.39738 -12.26527 -12.07582 -11.82626 -11.03342 -10.99873 -10.68831 -10.27645 -10.15696 -9.67079 -9.35939 -8.05016 -5.40303 0.12456 0.33881 1.39303 1.41263 1.48471 1.52952 2.03752 2.46998 2.79266 2.93815 3.26801 3.35120 3.63382 3.71575 3.86012 3.93361 4.01122 4.07096 4.19155 4.20927 4.26319 4.41385 4.57079 4.60445 4.68187 4.79181 4.80937 4.98534 5.02475 5.05821 5.11330 5.23061 5.28968 5.37504 5.72949 5.78131 6.18049 6.50855 7.02793 7.03694 7.18605 7.78387 7.95709 9.15786 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045612 B = 0.002761 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.723159 B =10138.447786 C =10499.204545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.062 4.062 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.253 1.253 7 C -0.237 4.237 8 H 0.063 0.937 9 N -0.759 5.759 10 C 0.149 3.851 11 C 0.121 3.879 12 N -0.708 5.708 13 C 0.524 3.476 14 O -0.579 6.579 15 C -0.096 4.096 16 H 0.141 0.859 17 C -0.062 4.062 18 C -0.155 4.155 19 C -0.071 4.071 20 C -0.167 4.167 21 C 0.087 3.913 22 N -0.510 5.510 23 C 0.097 3.903 24 C -0.057 4.057 25 H 0.259 0.741 26 H 0.367 0.633 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.419 0.581 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.112 0.888 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.543 -16.753 -0.929 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.253 4.253 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.177 1.177 7 C -0.368 4.368 8 H 0.081 0.919 9 N -0.406 5.406 10 C 0.023 3.977 11 C -0.003 4.003 12 N -0.361 5.361 13 C 0.311 3.689 14 O -0.458 6.458 15 C -0.117 4.117 16 H 0.159 0.841 17 C -0.100 4.100 18 C -0.157 4.157 19 C -0.096 4.096 20 C -0.186 4.186 21 C -0.070 4.070 22 N -0.219 5.219 23 C -0.040 4.040 24 C -0.095 4.095 25 H 0.068 0.932 26 H 0.200 0.800 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.256 0.744 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.174 0.826 35 H 0.187 0.813 36 H 0.197 0.803 37 H 0.130 0.870 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 27.081 -16.491 -1.425 31.739 hybrid contribution 0.284 1.223 0.330 1.298 sum 27.365 -15.268 -1.095 31.355 Atomic orbital electron populations 1.69869 1.07049 1.26814 1.59312 1.25505 0.96140 1.01288 1.02417 0.85439 0.78672 0.79714 0.78157 1.20436 1.22078 1.17722 1.19009 0.82241 0.93760 1.41764 0.91860 1.42562 1.02760 1.04007 1.91260 1.20849 0.88845 0.88176 0.99877 1.21238 0.90851 0.86444 1.01802 1.45726 1.06081 1.09907 1.74355 1.20696 0.82131 0.91228 0.74830 1.90699 1.68830 1.35002 1.51290 1.21940 0.95552 0.93356 1.00896 0.84114 1.20811 0.92080 0.96424 1.00669 1.21606 0.95253 0.98842 1.00043 1.21411 0.95671 0.95241 0.97313 1.22446 1.02112 0.97160 0.96916 1.23164 0.86973 0.98975 0.97893 1.66837 1.24262 1.11678 1.19122 1.21990 0.96994 0.92326 0.92725 1.20869 0.94211 0.98467 0.95950 0.93204 0.80039 0.94070 0.94003 0.91988 0.92124 0.74415 0.89879 0.88279 0.82641 0.81313 0.80282 0.87001 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.42 13.97 21.65 0.30 -62.12 16 2 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 3 Si 0.95 45.44 27.74 68.60 1.90 47.34 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 7 C -0.24 -13.33 10.47 84.03 0.88 -12.45 16 8 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 9 N -0.76 -34.76 5.41 -343.45 -1.86 -36.62 16 10 C 0.15 5.15 6.37 86.38 0.55 5.70 16 11 C 0.12 3.54 5.79 86.38 0.50 4.04 16 12 N -0.71 -15.44 5.56 -463.07 -2.57 -18.01 16 13 C 0.52 12.10 7.06 87.66 0.62 12.71 16 14 O -0.58 -18.39 15.51 -3.03 -0.05 -18.44 16 15 C -0.10 -1.51 3.46 -10.63 -0.04 -1.55 16 16 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 17 C -0.06 -1.04 6.09 30.48 0.19 -0.85 16 18 C -0.16 -2.67 6.17 -19.58 -0.12 -2.79 16 19 C -0.07 -0.94 10.16 22.42 0.23 -0.71 16 20 C -0.17 -1.88 10.12 22.35 0.23 -1.65 16 21 C 0.09 1.29 11.18 84.71 0.95 2.23 16 22 N -0.51 -10.65 10.35 -182.80 -1.89 -12.54 16 23 C 0.10 1.90 7.32 42.78 0.31 2.22 16 24 C -0.06 -0.93 6.31 30.54 0.19 -0.74 16 25 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 26 H 0.37 16.24 5.53 -92.71 -0.51 15.73 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.42 6.52 8.47 -92.71 -0.79 5.73 16 32 H 0.08 1.77 6.99 -2.39 -0.02 1.75 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 36 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 37 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.08 1.56 7.89 -2.39 -0.02 1.54 16 Total: -1.00 -76.22 321.69 0.52 -75.71 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.27 Total: 21.65 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 4.95 Total: 3.03 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -6.02 Total: -129.29 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.05 Total: -18.44 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Total: -76.22 0.52 -75.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149180604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.509 kcal (2) G-P(sol) polarization free energy of solvation -76.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds