Wall clock time and date at job start Mon Mar 30 2020 01:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 270.00238 * 3 2 1 5 5 H 1.48502 * 109.47120 * 29.99440 * 3 2 1 6 6 H 1.48494 * 109.47357 * 150.00159 * 3 2 1 7 7 C 1.38816 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00037 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99651 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99591 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46738 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47270 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21513 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.48173 * 119.99719 * 180.27160 * 13 12 11 16 16 C 1.39306 * 119.71974 * 179.44508 * 15 13 12 17 17 C 1.38594 * 119.05828 * 179.77595 * 16 15 13 18 18 C 1.38623 * 118.48816 * 0.49425 * 17 16 15 19 19 C 1.50693 * 120.32474 * 179.72851 * 18 17 16 20 20 C 1.53007 * 117.50117 * 188.64138 * 19 18 17 21 21 C 1.52997 * 60.00254 * 252.51325 * 20 19 18 22 22 C 1.38556 * 119.35026 * 359.75075 * 18 17 16 23 23 N 1.31522 * 120.90720 * 359.97438 * 22 18 17 24 24 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99808 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47212 * 60.00816 * 10 9 7 27 27 H 1.08997 * 109.47774 * 299.99706 * 10 9 7 28 28 H 1.08998 * 109.47202 * 60.00263 * 11 10 9 29 29 H 1.08997 * 109.47419 * 300.00161 * 11 10 9 30 30 H 0.97001 * 120.00074 * 359.97438 * 12 11 10 31 31 H 1.08000 * 120.47065 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.75652 * 180.24986 * 17 16 15 33 33 H 1.08998 * 115.55033 * 334.35573 * 19 18 17 34 34 H 1.08998 * 117.49515 * 0.02562 * 20 19 18 35 35 H 1.09001 * 117.49712 * 145.01847 * 20 19 18 36 36 H 1.09008 * 117.49875 * 252.51273 * 21 20 19 37 37 H 1.08996 * 117.50560 * 107.48910 * 21 20 19 38 38 H 1.08003 * 119.55020 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3797 -1.2023 0.0011 10 6 4.1120 -2.4710 0.0022 11 6 5.6163 -2.1914 0.0020 12 7 6.3488 -3.4602 0.0025 13 6 7.6966 -3.4602 0.0029 14 8 8.3042 -2.4079 0.0024 15 6 8.4373 -4.7435 -0.0027 16 6 9.8303 -4.7367 -0.0139 17 6 10.5094 -5.9449 -0.0143 18 6 9.7712 -7.1183 -0.0139 19 6 10.4670 -8.4549 -0.0204 20 6 9.6021 -9.7007 -0.2235 21 6 10.1961 -9.3981 1.1536 22 6 8.3873 -7.0500 -0.0079 23 7 7.7682 -5.8896 -0.0021 24 1 -0.4850 0.8400 0.0004 25 1 3.8646 -0.3622 0.0014 26 1 3.8491 -3.0431 -0.8876 27 1 3.8484 -3.0420 0.8924 28 1 5.8797 -1.6191 0.8914 29 1 5.8797 -1.6207 -0.8885 30 1 5.8638 -4.3002 0.0033 31 1 10.3735 -3.8032 -0.0182 32 1 11.5890 -5.9717 -0.0188 33 1 11.4684 -8.4615 -0.4506 34 1 8.5299 -9.5533 -0.3528 35 1 10.0345 -10.5270 -0.7877 36 1 11.0195 -10.0254 1.4955 37 1 9.5148 -9.0517 1.9307 38 1 7.8090 -7.9621 -0.0079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149513844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:13 Heat of formation + Delta-G solvation = 39.413135 kcal Electronic energy + Delta-G solvation = -19610.621357 eV Core-core repulsion = 16454.316326 eV Total energy + Delta-G solvation = -3156.305030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00585 -39.29246 -37.46923 -35.86787 -34.01073 -32.84558 -31.61270 -31.15818 -28.28383 -25.46981 -24.29908 -23.31202 -22.80679 -21.51869 -21.38126 -20.59978 -18.37967 -17.53023 -17.41495 -16.18329 -15.64357 -15.57689 -15.23254 -15.12156 -14.46187 -14.39530 -14.13137 -13.69910 -13.49361 -13.41682 -13.08969 -12.61766 -12.24700 -12.00206 -11.64161 -11.48650 -11.47797 -10.95912 -10.94736 -10.83513 -10.36904 -10.14737 -10.13506 -9.76323 -9.60241 -9.25276 -8.99419 -8.85216 -7.28365 -5.78172 -3.15453 0.31130 0.87559 2.55432 3.06880 3.30022 3.39848 3.43526 3.47222 3.68444 3.80905 4.06677 4.27904 4.39201 4.46951 4.51430 4.59172 4.61903 4.88263 4.98829 5.11561 5.31604 5.35386 5.40644 5.46565 5.48209 5.58095 5.61128 5.66690 5.70477 5.80115 5.97354 6.20901 6.39077 6.61844 6.64289 7.32384 7.63890 7.95749 8.18173 8.39910 9.17702 9.89901 10.08427 11.39714 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038340 B = 0.002767 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.126559 B =10117.495966 C =10756.641673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.753 5.753 10 C 0.148 3.852 11 C 0.105 3.895 12 N -0.700 5.700 13 C 0.567 3.433 14 O -0.537 6.537 15 C 0.077 3.923 16 C -0.107 4.107 17 C -0.078 4.078 18 C -0.085 4.085 19 C -0.121 4.121 20 C -0.174 4.174 21 C -0.166 4.166 22 C 0.097 3.903 23 N -0.451 5.451 24 H 0.260 0.740 25 H 0.363 0.637 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.412 0.588 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.709 -19.979 0.305 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.018 4.018 12 N -0.351 5.351 13 C 0.351 3.649 14 O -0.413 6.413 15 C -0.061 4.061 16 C -0.128 4.128 17 C -0.104 4.104 18 C -0.087 4.087 19 C -0.140 4.140 20 C -0.210 4.210 21 C -0.203 4.203 22 C -0.063 4.063 23 N -0.162 5.162 24 H 0.070 0.930 25 H 0.196 0.804 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.248 0.752 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.136 0.864 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 23.928 -19.201 0.311 30.681 hybrid contribution 1.230 0.747 -0.013 1.439 sum 25.159 -18.455 0.297 31.203 Atomic orbital electron populations 1.69704 1.05100 1.25954 1.57214 1.24679 0.95279 0.97319 1.01737 0.86536 0.79287 0.84762 0.77918 1.20926 1.21611 1.20158 1.19019 0.80213 0.94894 1.43577 0.89052 1.42533 1.04158 1.01835 1.91376 1.20731 0.87484 0.90228 0.99505 1.21680 0.92630 0.84891 1.02623 1.45744 1.05743 1.10902 1.72729 1.17836 0.82481 0.87278 0.77262 1.90789 1.68450 1.31595 1.50498 1.21217 0.91749 0.92324 1.00791 1.22138 0.94130 0.99809 0.96677 1.21419 1.00851 0.91040 0.97054 1.20358 0.94774 0.94566 0.98979 1.20982 1.00272 0.87726 1.05000 1.23108 0.99894 0.98188 0.99839 1.23076 1.03740 1.01740 0.91735 1.22690 0.91446 0.95679 0.96495 1.67593 1.40843 0.97931 1.09836 0.92962 0.80393 0.94724 0.94783 0.91083 0.91068 0.75217 0.83209 0.84027 0.86423 0.88012 0.87983 0.88074 0.88303 0.82128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.49 13.97 55.49 0.78 -28.72 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.89 22.42 27.74 -169.99 -4.71 17.71 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 7 C -0.25 -7.10 10.47 -15.05 -0.16 -7.26 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 9 N -0.75 -18.25 5.41 -59.91 -0.32 -18.58 16 10 C 0.15 2.87 6.37 -4.04 -0.03 2.85 16 11 C 0.11 1.78 5.79 -4.04 -0.02 1.76 16 12 N -0.70 -10.40 5.55 -61.15 -0.34 -10.73 16 13 C 0.57 8.70 7.81 -12.18 -0.10 8.60 16 14 O -0.54 -9.66 16.32 5.35 0.09 -9.57 16 15 C 0.08 0.98 6.75 -83.01 -0.56 0.42 16 16 C -0.11 -1.11 9.63 -39.05 -0.38 -1.49 16 17 C -0.08 -0.61 9.88 -39.31 -0.39 -1.00 16 18 C -0.08 -0.65 5.63 -104.37 -0.59 -1.23 16 19 C -0.12 -0.64 6.06 -91.77 -0.56 -1.19 16 20 C -0.17 -0.76 9.87 -26.73 -0.26 -1.02 16 21 C -0.17 -0.75 10.17 -26.73 -0.27 -1.03 16 22 C 0.10 0.86 10.47 -17.57 -0.18 0.68 16 23 N -0.45 -5.25 9.54 -9.80 -0.09 -5.34 16 24 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 25 H 0.36 8.62 5.53 -40.82 -0.23 8.40 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.41 5.47 7.80 -40.82 -0.32 5.15 16 31 H 0.15 1.49 7.64 -52.49 -0.40 1.09 16 32 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.43 6.20 -51.93 -0.32 0.10 16 35 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.16 1.06 6.03 -52.48 -0.32 0.74 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -34.13 326.42 -8.26 -42.39 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.98 Total: 7.76 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -3.59 Total: 0.17 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.02 Total: -63.37 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.13 -8.26 -42.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149513844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.801 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds