Wall clock time and date at job start Mon Mar 30 2020 01:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 270.00238 * 3 2 1 5 5 H 1.48502 * 109.47120 * 29.99440 * 3 2 1 6 6 H 1.48494 * 109.47357 * 150.00159 * 3 2 1 7 7 C 1.38816 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00037 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99651 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99591 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46738 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47270 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21513 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.48173 * 119.99719 * 180.27160 * 13 12 11 16 16 C 1.39306 * 119.71974 * 179.44508 * 15 13 12 17 17 C 1.38594 * 119.05828 * 179.77595 * 16 15 13 18 18 C 1.38623 * 118.48816 * 0.49425 * 17 16 15 19 19 C 1.50693 * 120.32474 * 179.72851 * 18 17 16 20 20 C 1.53007 * 117.50117 * 188.64138 * 19 18 17 21 21 C 1.52997 * 60.00254 * 252.51325 * 20 19 18 22 22 C 1.38556 * 119.35026 * 359.75075 * 18 17 16 23 23 N 1.31522 * 120.90720 * 359.97438 * 22 18 17 24 24 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99808 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47212 * 60.00816 * 10 9 7 27 27 H 1.08997 * 109.47774 * 299.99706 * 10 9 7 28 28 H 1.08998 * 109.47202 * 60.00263 * 11 10 9 29 29 H 1.08997 * 109.47419 * 300.00161 * 11 10 9 30 30 H 0.97001 * 120.00074 * 359.97438 * 12 11 10 31 31 H 1.08000 * 120.47065 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.75652 * 180.24986 * 17 16 15 33 33 H 1.08998 * 115.55033 * 334.35573 * 19 18 17 34 34 H 1.08998 * 117.49515 * 0.02562 * 20 19 18 35 35 H 1.09001 * 117.49712 * 145.01847 * 20 19 18 36 36 H 1.09008 * 117.49875 * 252.51273 * 21 20 19 37 37 H 1.08996 * 117.50560 * 107.48910 * 21 20 19 38 38 H 1.08003 * 119.55020 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3797 -1.2023 0.0011 10 6 4.1120 -2.4710 0.0022 11 6 5.6163 -2.1914 0.0020 12 7 6.3488 -3.4602 0.0025 13 6 7.6966 -3.4602 0.0029 14 8 8.3042 -2.4079 0.0024 15 6 8.4373 -4.7435 -0.0027 16 6 9.8303 -4.7367 -0.0139 17 6 10.5094 -5.9449 -0.0143 18 6 9.7712 -7.1183 -0.0139 19 6 10.4670 -8.4549 -0.0204 20 6 9.6021 -9.7007 -0.2235 21 6 10.1961 -9.3981 1.1536 22 6 8.3873 -7.0500 -0.0079 23 7 7.7682 -5.8896 -0.0021 24 1 -0.4850 0.8400 0.0004 25 1 3.8646 -0.3622 0.0014 26 1 3.8491 -3.0431 -0.8876 27 1 3.8484 -3.0420 0.8924 28 1 5.8797 -1.6191 0.8914 29 1 5.8797 -1.6207 -0.8885 30 1 5.8638 -4.3002 0.0033 31 1 10.3735 -3.8032 -0.0182 32 1 11.5890 -5.9717 -0.0188 33 1 11.4684 -8.4615 -0.4506 34 1 8.5299 -9.5533 -0.3528 35 1 10.0345 -10.5270 -0.7877 36 1 11.0195 -10.0254 1.4955 37 1 9.5148 -9.0517 1.9307 38 1 7.8090 -7.9621 -0.0079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149513844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:13 Heat of formation + Delta-G solvation = 15.289614 kcal Electronic energy + Delta-G solvation = -19611.667431 eV Core-core repulsion = 16454.316326 eV Total energy + Delta-G solvation = -3157.351105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.82048 -40.34460 -37.99620 -37.48980 -35.63578 -33.74287 -33.33307 -32.16072 -29.87811 -26.50211 -25.03992 -24.90716 -23.19032 -23.13791 -22.22995 -21.47402 -19.96005 -19.10592 -18.14083 -17.10969 -16.85005 -16.63408 -16.36149 -15.95220 -15.72934 -15.63125 -15.55834 -15.11797 -14.68832 -14.56084 -14.18113 -13.71917 -13.46936 -13.23618 -12.74736 -12.73737 -12.64139 -12.33023 -12.10166 -12.02925 -11.83650 -11.52237 -11.27564 -11.05083 -10.82666 -10.59622 -10.29373 -9.81919 -9.38428 -8.05951 -5.41913 -0.48408 0.18738 1.38861 1.41104 1.48354 1.57169 1.91567 2.46381 2.66135 2.99812 3.09787 3.25398 3.51441 3.64307 3.76886 3.85100 3.86723 3.97426 4.00476 4.13022 4.15180 4.29880 4.32637 4.49331 4.68060 4.85910 4.91160 4.97939 5.04871 5.04914 5.08803 5.25200 5.27851 5.28622 5.53438 5.71118 6.16625 6.29593 6.71162 7.00817 7.03597 7.75405 7.94465 9.14818 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038340 B = 0.002767 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.126559 B =10117.495966 C =10756.641673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.061 4.061 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.253 1.253 7 C -0.240 4.240 8 H 0.062 0.938 9 N -0.757 5.757 10 C 0.151 3.849 11 C 0.121 3.879 12 N -0.696 5.696 13 C 0.566 3.434 14 O -0.570 6.570 15 C 0.048 3.952 16 C -0.110 4.110 17 C -0.074 4.074 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.171 4.171 21 C -0.163 4.163 22 C 0.088 3.912 23 N -0.469 5.469 24 H 0.260 0.740 25 H 0.368 0.632 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.419 0.581 31 H 0.149 0.851 32 H 0.175 0.825 33 H 0.135 0.865 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.545 -21.397 0.278 34.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.252 4.252 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.178 1.178 7 C -0.370 4.370 8 H 0.080 0.920 9 N -0.404 5.404 10 C 0.024 3.976 11 C -0.004 4.004 12 N -0.347 5.347 13 C 0.352 3.648 14 O -0.449 6.449 15 C -0.089 4.089 16 C -0.131 4.131 17 C -0.099 4.099 18 C -0.074 4.074 19 C -0.147 4.147 20 C -0.208 4.208 21 C -0.200 4.200 22 C -0.073 4.073 23 N -0.180 5.180 24 H 0.069 0.931 25 H 0.201 0.799 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.257 0.743 31 H 0.167 0.833 32 H 0.192 0.808 33 H 0.153 0.847 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 26.803 -20.664 0.285 33.845 hybrid contribution 0.384 0.949 -0.002 1.023 sum 27.187 -19.715 0.283 33.584 Atomic orbital electron populations 1.69875 1.07040 1.26882 1.59167 1.25516 0.96175 1.01321 1.02232 0.85420 0.78652 0.79552 0.78259 1.20254 1.21903 1.17769 1.19004 0.82143 0.93824 1.42056 0.91987 1.42520 1.02793 1.03784 1.91279 1.20796 0.88677 0.88337 0.99768 1.21345 0.90951 0.85788 1.02296 1.45627 1.05867 1.10416 1.72806 1.18274 0.82273 0.88103 0.76100 1.90755 1.68998 1.33077 1.52113 1.20876 0.92361 0.91485 1.04182 1.22242 0.93323 1.01007 0.96560 1.21773 1.02427 0.89941 0.95745 1.20667 0.94358 0.95847 0.96517 1.21081 1.01038 0.86558 1.06046 1.23217 0.99897 0.97901 0.99788 1.23134 1.04036 1.01325 0.91521 1.23123 0.92573 0.95426 0.96145 1.67502 1.41585 0.98371 1.10550 0.93130 0.79902 0.94182 0.94290 0.91508 0.91378 0.74335 0.83300 0.80780 0.84724 0.88024 0.86696 0.86704 0.89023 0.80120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.23 13.97 21.65 0.30 -62.93 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.95 46.21 27.74 68.60 1.90 48.12 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 7 C -0.24 -13.88 10.47 84.03 0.88 -13.00 16 8 H 0.06 3.88 8.06 -2.91 -0.02 3.86 16 9 N -0.76 -36.25 5.41 -343.46 -1.86 -38.11 16 10 C 0.15 5.76 6.37 86.38 0.55 6.31 16 11 C 0.12 4.01 5.79 86.38 0.50 4.51 16 12 N -0.70 -20.50 5.55 -465.66 -2.58 -23.09 16 13 C 0.57 17.42 7.81 86.88 0.68 18.09 16 14 O -0.57 -20.72 16.32 -3.76 -0.06 -20.78 16 15 C 0.05 1.19 6.75 41.91 0.28 1.48 16 16 C -0.11 -2.19 9.63 22.61 0.22 -1.97 16 17 C -0.07 -0.97 9.88 22.45 0.22 -0.75 16 18 C -0.07 -0.91 5.63 -19.70 -0.11 -1.02 16 19 C -0.13 -0.93 6.06 -11.54 -0.07 -1.00 16 20 C -0.17 -0.97 9.87 30.60 0.30 -0.67 16 21 C -0.16 -1.00 10.17 30.60 0.31 -0.68 16 22 C 0.09 1.41 10.47 84.82 0.89 2.30 16 23 N -0.47 -10.55 9.54 -184.91 -1.76 -12.31 16 24 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 25 H 0.37 16.89 5.53 -92.71 -0.51 16.38 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 30 H 0.42 11.01 7.80 -92.71 -0.72 10.29 16 31 H 0.15 2.90 7.64 -2.91 -0.02 2.87 16 32 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 0.58 6.20 -2.39 -0.01 0.56 16 35 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.18 2.01 6.03 -2.91 -0.02 1.99 16 Total: -1.00 -74.21 326.42 0.86 -73.35 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.20 Total: 25.30 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 5.12 Total: 10.45 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -5.90 Total: -136.44 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.06 Total: -20.78 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.12 kcal Total: -74.21 0.86 -73.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149513844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.642 kcal (2) G-P(sol) polarization free energy of solvation -74.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds