Wall clock time and date at job start Mon Mar 30 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 299.99516 * 3 2 1 6 6 H 1.48502 * 109.46985 * 59.99483 * 3 2 1 7 7 C 1.40027 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99914 * 197.30841 * 7 2 1 9 9 C 1.41545 * 119.99959 * 17.31556 * 7 2 1 10 10 C 1.41186 * 120.99468 * 23.14758 * 9 7 2 11 11 C 1.36564 * 119.14732 * 180.02562 * 10 9 7 12 12 N 1.32088 * 121.26581 * 359.72187 * 11 10 9 13 13 C 1.32535 * 122.21872 * 0.57758 * 12 11 10 14 14 N 1.39080 * 119.65635 * 179.69995 * 13 12 11 15 15 C 1.46501 * 119.99941 * 179.72249 * 14 13 12 16 16 C 1.52998 * 109.47460 * 180.02562 * 15 14 13 17 17 H 1.08999 * 109.66756 * 304.50799 * 16 15 14 18 18 C 1.53343 * 109.70616 * 183.99030 * 16 15 14 19 19 C 1.52926 * 108.67367 * 172.71894 * 18 16 15 20 20 N 1.45732 * 110.55078 * 50.53408 * 19 18 16 21 21 C 1.33355 * 124.12376 * 341.42798 * 20 19 18 22 22 O 1.21286 * 118.24707 * 181.93349 * 21 20 19 23 23 C 1.50176 * 123.50739 * 1.64856 * 21 20 19 24 24 C 1.38737 * 120.68440 * 359.42645 * 13 12 11 25 25 H 0.97008 * 120.00119 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.42831 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.36228 * 180.02562 * 11 10 9 28 28 H 0.97000 * 120.00184 * 359.72955 * 14 13 12 29 29 H 1.09001 * 109.46635 * 60.00611 * 15 14 13 30 30 H 1.08999 * 109.47319 * 300.00968 * 15 14 13 31 31 H 1.09001 * 109.60137 * 292.47399 * 18 16 15 32 32 H 1.08999 * 109.60559 * 52.79856 * 18 16 15 33 33 H 1.08996 * 109.29610 * 171.06472 * 19 18 16 34 34 H 1.08996 * 109.29936 * 290.64391 * 19 18 16 35 35 H 0.97006 * 117.93296 * 161.16058 * 20 19 18 36 36 H 1.09001 * 109.39930 * 102.82914 * 23 21 20 37 37 H 1.08991 * 109.40572 * 222.65828 * 23 21 20 38 38 H 1.07999 * 120.66811 * 180.29814 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0509 -1.2337 0.2788 9 6 1.3480 -2.4109 -0.3638 10 6 0.1899 -2.3868 -1.1710 11 6 -0.4167 -3.5654 -1.4993 12 7 0.0626 -4.7230 -1.0809 13 6 1.1423 -4.8060 -0.3167 14 7 1.5972 -6.0529 0.0986 15 6 2.7934 -6.1538 0.9384 16 6 3.0751 -7.6249 1.2503 17 1 2.1950 -8.0782 1.7064 18 6 4.2665 -7.7311 2.2098 19 6 4.4135 -9.1887 2.6485 20 7 4.4205 -10.0733 1.4904 21 6 3.9688 -9.7295 0.2837 22 8 3.9929 -10.5630 -0.5971 23 6 3.4263 -8.3675 -0.0414 24 6 1.8267 -3.6623 0.0685 25 1 -0.4851 0.8401 -0.0004 26 1 -0.2112 -1.4483 -1.5243 27 1 -1.3026 -3.5511 -2.1170 28 1 1.1226 -6.8558 -0.1678 29 1 2.6311 -5.6094 1.8687 30 1 3.6452 -5.7251 0.4105 31 1 5.1753 -7.4088 1.7014 32 1 4.0916 -7.1003 3.0813 33 1 5.3458 -9.3064 3.2007 34 1 3.5766 -9.4570 3.2932 35 1 4.7798 -10.9672 1.6036 36 1 4.1770 -7.8007 -0.5921 37 1 2.5301 -8.4711 -0.6530 38 1 2.7092 -3.7305 0.6872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154935364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:40 Heat of formation + Delta-G solvation = -20.079978 kcal Electronic energy + Delta-G solvation = -20431.451746 eV Core-core repulsion = 17272.566901 eV Total energy + Delta-G solvation = -3158.884845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46507 -38.49126 -37.12807 -35.37458 -34.04820 -32.61230 -30.60676 -29.85467 -28.36483 -26.16731 -25.86648 -23.68029 -22.05340 -20.96057 -20.54213 -19.41362 -17.73795 -17.43970 -16.32898 -15.97250 -15.60340 -15.18443 -14.96285 -14.67441 -14.34787 -13.99673 -13.60639 -13.47708 -13.22319 -13.11979 -12.60550 -12.38215 -12.11265 -11.89328 -11.41324 -11.37324 -11.17411 -11.10194 -11.02152 -10.81776 -10.28094 -9.87336 -9.81481 -9.42396 -9.32147 -8.94364 -7.96039 -7.90166 -6.84453 -6.47019 -4.55997 2.51155 2.78109 3.03105 3.06695 3.08823 3.09023 3.35342 3.86407 3.94358 4.35608 4.46010 4.51790 4.63397 4.71159 5.06767 5.10599 5.19048 5.42013 5.51740 5.56847 5.73333 5.79160 5.82135 5.97273 6.10704 6.19007 6.54775 6.76268 6.90155 6.94876 7.00338 7.11411 7.27606 7.55989 7.83122 8.04174 8.04722 8.09958 8.43876 8.69924 8.83309 8.90572 9.78495 10.10343 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028240 B = 0.003558 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.258809 B = 7866.903162 C = 8519.666808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.155 3.845 10 C -0.246 4.246 11 C 0.116 3.884 12 N -0.624 5.624 13 C 0.397 3.603 14 N -0.746 5.746 15 C 0.148 3.852 16 C -0.101 4.101 17 H 0.084 0.916 18 C -0.131 4.131 19 C 0.112 3.888 20 N -0.723 5.723 21 C 0.522 3.478 22 O -0.561 6.561 23 C -0.130 4.130 24 C -0.336 4.336 25 H 0.281 0.719 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.389 0.611 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.738 -10.396 6.712 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.147 3.853 10 C -0.270 4.270 11 C -0.033 4.033 12 N -0.348 5.348 13 C 0.166 3.834 14 N -0.383 5.383 15 C 0.023 3.977 16 C -0.120 4.120 17 H 0.102 0.898 18 C -0.169 4.169 19 C -0.013 4.013 20 N -0.375 5.375 21 C 0.309 3.691 22 O -0.440 6.440 23 C -0.169 4.169 24 C -0.363 4.363 25 H 0.092 0.908 26 H 0.141 0.859 27 H 0.135 0.865 28 H 0.223 0.777 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.155 -11.114 6.083 14.551 hybrid contribution 0.689 1.054 0.381 1.316 sum 7.844 -10.061 6.464 14.301 Atomic orbital electron populations 1.69818 1.07717 1.29295 1.33981 1.25967 0.94715 1.01460 0.91915 0.86252 0.81021 0.80761 0.78646 1.18316 1.19581 1.19914 1.19609 0.97963 0.90923 1.40267 0.90255 1.17603 0.89879 0.91656 0.86157 1.21790 1.01484 0.98132 1.05616 1.21356 0.97243 0.87868 0.96864 1.66740 1.16562 1.29767 1.21690 1.17921 0.90147 0.84512 0.90779 1.44076 1.30465 1.05431 1.58301 1.21090 0.88381 0.93423 0.94845 1.21504 0.98844 0.96555 0.95118 0.89779 1.21879 0.98914 0.95470 1.00644 1.21388 1.02313 0.90163 0.87408 1.45507 1.64090 1.17742 1.10206 1.20310 0.76663 0.90460 0.81649 1.90760 1.56634 1.51152 1.45408 1.21735 1.03761 0.92248 0.99185 1.21110 1.07429 0.92179 1.15544 0.90768 0.85934 0.86474 0.77728 0.92265 0.92514 0.90453 0.89054 0.90390 0.91529 0.76825 0.87794 0.87832 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.80 10.90 55.55 0.61 -19.19 16 2 C 0.08 1.94 5.19 -17.34 -0.09 1.85 16 3 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.91 9.12 -37.65 -0.34 -12.25 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.16 4.14 5.61 -106.56 -0.60 3.54 16 10 C -0.25 -6.43 8.75 -39.07 -0.34 -6.77 16 11 C 0.12 2.85 11.10 -18.05 -0.20 2.64 16 12 N -0.62 -15.23 10.37 -12.82 -0.13 -15.36 16 13 C 0.40 9.11 7.65 -154.98 -1.19 7.93 16 14 N -0.75 -13.10 5.53 -60.48 -0.33 -13.43 16 15 C 0.15 2.00 4.29 -4.04 -0.02 1.98 16 16 C -0.10 -0.99 2.30 -90.41 -0.21 -1.20 16 17 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 18 C -0.13 -0.93 5.32 -26.59 -0.14 -1.08 16 19 C 0.11 0.67 7.17 -4.49 -0.03 0.64 16 20 N -0.72 -6.23 5.45 -61.40 -0.33 -6.56 16 21 C 0.52 6.33 7.71 -11.87 -0.09 6.24 16 22 O -0.56 -9.23 17.78 5.55 0.10 -9.13 16 23 C -0.13 -1.45 5.10 -28.10 -0.14 -1.59 16 24 C -0.34 -8.19 9.12 -38.44 -0.35 -8.54 16 25 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 26 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 27 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 28 H 0.39 6.39 7.89 -40.82 -0.32 6.06 16 29 H 0.06 0.83 7.93 -51.93 -0.41 0.42 16 30 H 0.06 0.79 7.89 -51.93 -0.41 0.38 16 31 H 0.08 0.56 8.12 -51.93 -0.42 0.13 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.40 2.99 8.80 -40.82 -0.36 2.63 16 36 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 37 H 0.10 1.26 7.50 -51.93 -0.39 0.87 16 38 H 0.10 2.18 6.71 -52.49 -0.35 1.83 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -31.74 315.27 -9.19 -40.93 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.07 Total: 11.57 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -3.74 Total: -6.62 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.20 Total: -54.55 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.10 Total: -9.13 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.74 -9.19 -40.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154935364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.848 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds