Wall clock time and date at job start Mon Mar 30 2020 02:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86803 * 119.99714 * 2 1 4 4 H 1.48497 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46837 * 300.00400 * 3 2 1 6 6 H 1.48503 * 109.47069 * 60.00208 * 3 2 1 7 7 C 1.40025 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00380 * 163.15469 * 7 2 1 9 9 C 1.41552 * 119.99686 * 343.14931 * 7 2 1 10 10 C 1.41191 * 120.99577 * 336.12937 * 9 7 2 11 11 C 1.36556 * 119.14391 * 180.22768 * 10 9 7 12 12 N 1.32093 * 121.27268 * 359.48055 * 11 10 9 13 13 C 1.32534 * 122.21032 * 0.53844 * 12 11 10 14 14 N 1.39084 * 119.65080 * 179.75429 * 13 12 11 15 15 C 1.46503 * 119.99712 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.47132 * 179.97438 * 15 14 13 17 17 H 1.08998 * 109.67155 * 55.50395 * 16 15 14 18 18 C 1.53346 * 109.67503 * 176.03561 * 16 15 14 19 19 C 1.52933 * 108.66431 * 187.28111 * 18 16 15 20 20 N 1.45759 * 110.47737 * 309.21314 * 19 18 16 21 21 C 1.33356 * 124.10469 * 19.11628 * 20 19 18 22 22 O 1.21275 * 118.24533 * 177.77680 * 21 20 19 23 23 C 1.50178 * 123.50804 * 357.74972 * 21 20 19 24 24 C 1.38734 * 120.69140 * 359.72839 * 13 12 11 25 25 H 0.96999 * 120.00398 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.42486 * 359.95748 * 10 9 7 27 27 H 1.08005 * 119.36124 * 179.72488 * 11 10 9 28 28 H 0.96996 * 120.00587 * 359.97438 * 14 13 12 29 29 H 1.09002 * 109.47074 * 300.00079 * 15 14 13 30 30 H 1.09008 * 109.46964 * 60.00093 * 15 14 13 31 31 H 1.09006 * 109.60194 * 307.02536 * 18 16 15 32 32 H 1.09000 * 109.60463 * 67.50381 * 18 16 15 33 33 H 1.09000 * 109.29018 * 188.91579 * 19 18 16 34 34 H 1.08999 * 109.31785 * 69.53213 * 19 18 16 35 35 H 0.96998 * 117.94762 * 199.09326 * 20 19 18 36 36 H 1.08998 * 109.39972 * 257.45308 * 23 21 20 37 37 H 1.08998 * 109.39901 * 137.71469 * 23 21 20 38 38 H 1.08005 * 120.67190 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8825 2.3965 -1.2125 6 1 1.8826 2.3965 1.2126 7 6 2.0077 -1.2126 -0.0005 8 1 3.0528 -1.2326 -0.2716 9 6 1.3455 -2.4123 0.3543 10 6 0.1904 -2.3926 1.1660 11 6 -0.4156 -3.5729 1.4890 12 7 0.0523 -4.7270 1.0487 13 6 1.1321 -4.8061 0.2844 14 7 1.5814 -6.0503 -0.1453 15 6 2.7739 -6.1466 -0.9908 16 6 3.0495 -7.6154 -1.3186 17 1 2.1663 -8.0613 -1.7758 18 6 4.2373 -7.7150 -2.2834 19 6 4.3782 -9.1685 -2.7376 20 7 4.3925 -10.0633 -1.5871 21 6 3.9411 -9.7322 -0.3767 22 8 3.9665 -10.5744 0.4955 23 6 3.4035 -8.3720 -0.0359 24 6 1.8187 -3.6609 -0.0920 25 1 -0.4851 0.8400 0.0004 26 1 -0.2062 -1.4564 1.5303 27 1 -1.2969 -3.5622 2.1134 28 1 1.1052 -6.8543 0.1149 29 1 2.6097 -5.5923 -1.9149 30 1 3.6292 -5.7260 -0.4619 31 1 4.0597 -7.0770 -3.1491 32 1 5.1487 -7.4003 -1.7751 33 1 5.3081 -9.2831 -3.2947 34 1 3.5400 -9.4270 -3.3847 35 1 4.7527 -10.9555 -1.7095 36 1 4.1577 -7.8129 0.5179 37 1 2.5101 -8.4795 0.5793 38 1 2.6985 -3.7257 -0.7152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154935365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:44 Heat of formation + Delta-G solvation = -20.109997 kcal Electronic energy + Delta-G solvation = -20431.480678 eV Core-core repulsion = 17272.594531 eV Total energy + Delta-G solvation = -3158.886147 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46520 -38.49383 -37.12957 -35.37326 -34.04279 -32.61266 -30.60600 -29.85535 -28.36767 -26.16899 -25.86460 -23.67787 -22.05347 -20.96141 -20.54310 -19.41702 -17.73719 -17.44091 -16.32840 -15.97155 -15.59873 -15.18588 -14.96105 -14.68129 -14.34553 -13.99559 -13.60662 -13.47635 -13.22764 -13.11959 -12.60375 -12.38098 -12.11287 -11.89541 -11.41126 -11.37134 -11.17497 -11.10345 -11.02205 -10.81968 -10.27762 -9.87435 -9.81429 -9.42582 -9.32343 -8.94367 -7.96425 -7.89749 -6.83913 -6.47220 -4.55998 2.51120 2.78258 3.03238 3.06522 3.08925 3.08993 3.35162 3.86679 3.94331 4.35510 4.46379 4.51531 4.63406 4.71416 5.06694 5.10538 5.19027 5.41961 5.51605 5.57047 5.73199 5.79058 5.81827 5.97216 6.10549 6.18915 6.54783 6.76006 6.89920 6.94730 7.00687 7.11331 7.27177 7.55716 7.83189 8.04152 8.04695 8.09618 8.44024 8.69776 8.83371 8.90344 9.78126 10.11090 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.003560 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.446814 B = 7862.858975 C = 8518.485393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.156 3.844 10 C -0.245 4.245 11 C 0.116 3.884 12 N -0.624 5.624 13 C 0.397 3.603 14 N -0.745 5.745 15 C 0.148 3.852 16 C -0.101 4.101 17 H 0.084 0.916 18 C -0.131 4.131 19 C 0.111 3.889 20 N -0.723 5.723 21 C 0.522 3.478 22 O -0.561 6.561 23 C -0.130 4.130 24 C -0.335 4.335 25 H 0.281 0.719 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.389 0.611 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.397 0.603 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.694 -10.375 -6.811 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.147 3.853 10 C -0.269 4.269 11 C -0.034 4.034 12 N -0.347 5.347 13 C 0.166 3.834 14 N -0.383 5.383 15 C 0.023 3.977 16 C -0.120 4.120 17 H 0.102 0.898 18 C -0.169 4.169 19 C -0.013 4.013 20 N -0.375 5.375 21 C 0.309 3.691 22 O -0.439 6.439 23 C -0.169 4.169 24 C -0.362 4.362 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.223 0.777 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.107 -11.097 -6.198 14.562 hybrid contribution 0.686 1.056 -0.381 1.316 sum 7.793 -10.041 -6.579 14.312 Atomic orbital electron populations 1.69812 1.07699 1.29288 1.34114 1.25960 0.94721 1.01436 0.91938 0.86251 0.81006 0.80776 0.78639 1.18326 1.19919 1.19590 1.19607 0.97790 0.90858 1.40564 0.90256 1.17608 0.89838 0.91667 0.86151 1.21776 1.01579 0.98060 1.05493 1.21357 0.97317 0.87899 0.96785 1.66745 1.16616 1.29906 1.21443 1.17923 0.90106 0.84545 0.90808 1.44077 1.30761 1.05553 1.57883 1.21094 0.88474 0.93463 0.94715 1.21504 0.98872 0.96500 0.95141 0.89776 1.21887 0.98950 0.95529 1.00533 1.21390 1.02339 0.89993 0.87567 1.45506 1.64021 1.17781 1.10232 1.20308 0.76629 0.90507 0.81629 1.90758 1.56549 1.50503 1.46136 1.21734 1.03808 0.92209 0.99182 1.21119 1.07549 0.92232 1.15303 0.90777 0.85983 0.86468 0.77725 0.92262 0.92509 0.89068 0.90428 0.90428 0.91506 0.76828 0.87792 0.87839 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.85 10.92 55.55 0.61 -19.24 16 2 C 0.08 1.94 5.20 -17.34 -0.09 1.85 16 3 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -11.92 9.12 -37.65 -0.34 -12.26 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.16 4.15 5.60 -106.55 -0.60 3.55 16 10 C -0.24 -6.40 8.74 -39.07 -0.34 -6.74 16 11 C 0.12 2.84 11.10 -18.05 -0.20 2.64 16 12 N -0.62 -15.21 10.37 -12.82 -0.13 -15.34 16 13 C 0.40 9.10 7.65 -154.98 -1.19 7.92 16 14 N -0.75 -13.09 5.53 -60.47 -0.33 -13.42 16 15 C 0.15 2.00 4.29 -4.04 -0.02 1.98 16 16 C -0.10 -0.99 2.30 -90.41 -0.21 -1.20 16 17 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 18 C -0.13 -0.93 5.32 -26.59 -0.14 -1.07 16 19 C 0.11 0.67 7.17 -4.48 -0.03 0.64 16 20 N -0.72 -6.22 5.45 -61.38 -0.33 -6.56 16 21 C 0.52 6.32 7.71 -11.87 -0.09 6.23 16 22 O -0.56 -9.22 17.78 5.56 0.10 -9.12 16 23 C -0.13 -1.45 5.10 -28.10 -0.14 -1.59 16 24 C -0.34 -8.17 9.12 -38.44 -0.35 -8.52 16 25 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 26 H 0.12 3.25 6.20 -52.49 -0.33 2.92 16 27 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 28 H 0.39 6.38 7.89 -40.82 -0.32 6.06 16 29 H 0.06 0.83 7.93 -51.93 -0.41 0.42 16 30 H 0.06 0.79 7.89 -51.92 -0.41 0.38 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.40 2.99 8.80 -40.82 -0.36 2.63 16 36 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 37 H 0.10 1.26 7.50 -51.93 -0.39 0.87 16 38 H 0.10 2.18 6.71 -52.48 -0.35 1.83 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -31.74 315.31 -9.19 -40.93 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.07 Total: 11.54 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -3.74 Total: -6.60 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.20 Total: -54.56 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.10 Total: -9.12 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.74 -9.19 -40.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154935365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.820 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds