Wall clock time and date at job start Mon Mar 30 2020 02:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86803 * 119.99714 * 2 1 4 4 H 1.48497 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46837 * 300.00400 * 3 2 1 6 6 H 1.48503 * 109.47069 * 60.00208 * 3 2 1 7 7 C 1.40025 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00380 * 163.15469 * 7 2 1 9 9 C 1.41552 * 119.99686 * 343.14931 * 7 2 1 10 10 C 1.41191 * 120.99577 * 336.12937 * 9 7 2 11 11 C 1.36556 * 119.14391 * 180.22768 * 10 9 7 12 12 N 1.32093 * 121.27268 * 359.48055 * 11 10 9 13 13 C 1.32534 * 122.21032 * 0.53844 * 12 11 10 14 14 N 1.39084 * 119.65080 * 179.75429 * 13 12 11 15 15 C 1.46503 * 119.99712 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.47132 * 179.97438 * 15 14 13 17 17 H 1.08998 * 109.67155 * 55.50395 * 16 15 14 18 18 C 1.53346 * 109.67503 * 176.03561 * 16 15 14 19 19 C 1.52933 * 108.66431 * 187.28111 * 18 16 15 20 20 N 1.45759 * 110.47737 * 309.21314 * 19 18 16 21 21 C 1.33356 * 124.10469 * 19.11628 * 20 19 18 22 22 O 1.21275 * 118.24533 * 177.77680 * 21 20 19 23 23 C 1.50178 * 123.50804 * 357.74972 * 21 20 19 24 24 C 1.38734 * 120.69140 * 359.72839 * 13 12 11 25 25 H 0.96999 * 120.00398 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.42486 * 359.95748 * 10 9 7 27 27 H 1.08005 * 119.36124 * 179.72488 * 11 10 9 28 28 H 0.96996 * 120.00587 * 359.97438 * 14 13 12 29 29 H 1.09002 * 109.47074 * 300.00079 * 15 14 13 30 30 H 1.09008 * 109.46964 * 60.00093 * 15 14 13 31 31 H 1.09006 * 109.60194 * 307.02536 * 18 16 15 32 32 H 1.09000 * 109.60463 * 67.50381 * 18 16 15 33 33 H 1.09000 * 109.29018 * 188.91579 * 19 18 16 34 34 H 1.08999 * 109.31785 * 69.53213 * 19 18 16 35 35 H 0.96998 * 117.94762 * 199.09326 * 20 19 18 36 36 H 1.08998 * 109.39972 * 257.45308 * 23 21 20 37 37 H 1.08998 * 109.39901 * 137.71469 * 23 21 20 38 38 H 1.08005 * 120.67190 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8825 2.3965 -1.2125 6 1 1.8826 2.3965 1.2126 7 6 2.0077 -1.2126 -0.0005 8 1 3.0528 -1.2326 -0.2716 9 6 1.3455 -2.4123 0.3543 10 6 0.1904 -2.3926 1.1660 11 6 -0.4156 -3.5729 1.4890 12 7 0.0523 -4.7270 1.0487 13 6 1.1321 -4.8061 0.2844 14 7 1.5814 -6.0503 -0.1453 15 6 2.7739 -6.1466 -0.9908 16 6 3.0495 -7.6154 -1.3186 17 1 2.1663 -8.0613 -1.7758 18 6 4.2373 -7.7150 -2.2834 19 6 4.3782 -9.1685 -2.7376 20 7 4.3925 -10.0633 -1.5871 21 6 3.9411 -9.7322 -0.3767 22 8 3.9665 -10.5744 0.4955 23 6 3.4035 -8.3720 -0.0359 24 6 1.8187 -3.6609 -0.0920 25 1 -0.4851 0.8400 0.0004 26 1 -0.2062 -1.4564 1.5303 27 1 -1.2969 -3.5622 2.1134 28 1 1.1052 -6.8543 0.1149 29 1 2.6097 -5.5923 -1.9149 30 1 3.6292 -5.7260 -0.4619 31 1 4.0597 -7.0770 -3.1491 32 1 5.1487 -7.4003 -1.7751 33 1 5.3081 -9.2831 -3.2947 34 1 3.5400 -9.4270 -3.3847 35 1 4.7527 -10.9555 -1.7095 36 1 4.1577 -7.8129 0.5179 37 1 2.5101 -8.4795 0.5793 38 1 2.6985 -3.7257 -0.7152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154935365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:43 Heat of formation + Delta-G solvation = -41.966533 kcal Electronic energy + Delta-G solvation = -20432.428449 eV Core-core repulsion = 17272.594531 eV Total energy + Delta-G solvation = -3159.833917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35996 -40.26228 -38.21140 -36.62265 -35.74125 -33.83078 -32.51429 -30.64915 -29.95778 -27.79977 -27.36213 -24.52304 -23.51563 -22.64839 -21.98051 -20.19084 -19.43805 -18.36495 -17.69626 -17.17571 -16.90464 -16.54985 -16.41523 -15.86150 -15.70247 -15.27623 -14.98733 -14.74097 -14.57955 -14.35205 -14.17239 -13.67091 -13.46150 -13.10547 -12.85730 -12.74338 -12.71148 -12.22179 -11.99217 -11.88325 -11.83541 -11.68471 -11.23295 -10.87150 -10.58582 -10.05929 -9.90198 -9.81036 -8.68005 -8.19928 -6.52604 0.99657 1.21327 1.41176 1.56358 1.57145 1.61814 2.20911 2.34007 2.58519 2.83445 3.50233 3.67535 3.79523 3.85256 3.86806 4.25462 4.35298 4.41982 4.49961 4.61124 4.77201 4.81929 4.92885 4.94971 4.95380 5.04477 5.08546 5.11019 5.21249 5.33866 5.35456 5.64489 5.84660 5.94198 6.14033 6.31190 6.42942 6.58790 6.89192 6.93940 7.07782 7.18815 7.91633 8.29547 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.003560 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.446814 B = 7862.858975 C = 8518.485393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.488 4.488 8 H 0.081 0.919 9 C 0.127 3.873 10 C -0.271 4.271 11 C 0.115 3.885 12 N -0.637 5.637 13 C 0.397 3.603 14 N -0.734 5.734 15 C 0.145 3.855 16 C -0.086 4.086 17 H 0.090 0.910 18 C -0.128 4.128 19 C 0.109 3.891 20 N -0.710 5.710 21 C 0.520 3.480 22 O -0.613 6.613 23 C -0.127 4.127 24 C -0.353 4.353 25 H 0.291 0.709 26 H 0.110 0.890 27 H 0.141 0.859 28 H 0.396 0.604 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.404 0.596 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.923 -10.402 -8.518 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.119 3.881 10 C -0.296 4.296 11 C -0.035 4.035 12 N -0.361 5.361 13 C 0.164 3.836 14 N -0.370 5.370 15 C 0.021 3.979 16 C -0.105 4.105 17 H 0.108 0.892 18 C -0.166 4.166 19 C -0.014 4.014 20 N -0.360 5.360 21 C 0.308 3.692 22 O -0.496 6.496 23 C -0.167 4.167 24 C -0.380 4.380 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.158 0.842 28 H 0.231 0.769 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.240 0.760 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.361 -11.167 -7.973 16.068 hybrid contribution 0.291 0.987 0.090 1.033 sum 8.652 -10.180 -7.883 15.512 Atomic orbital electron populations 1.69858 1.09230 1.30868 1.33932 1.26859 0.95483 1.04725 0.90777 0.85097 0.79456 0.75750 0.79027 1.17933 1.18841 1.18901 1.19893 0.98118 0.91908 1.41969 0.90096 1.18021 0.90445 0.92967 0.86677 1.21742 1.02613 0.98154 1.07100 1.21714 0.97706 0.87604 0.96456 1.66894 1.17384 1.29622 1.22235 1.18220 0.89351 0.86197 0.89799 1.44223 1.31488 1.03930 1.57324 1.21323 0.86604 0.96161 0.93847 1.21399 1.00533 0.93444 0.95136 0.89156 1.21923 0.97447 0.96871 1.00383 1.21649 1.04719 0.88433 0.86559 1.45505 1.62130 1.18588 1.09794 1.20381 0.76480 0.90136 0.82157 1.90735 1.59021 1.51833 1.48022 1.21670 1.03151 0.92157 0.99737 1.21257 1.08401 0.92165 1.16153 0.89825 0.87243 0.84171 0.76933 0.92101 0.92780 0.87254 0.90236 0.87358 0.89883 0.76000 0.87972 0.89264 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.66 10.92 21.84 0.24 -41.42 16 2 C 0.04 1.90 5.20 85.29 0.44 2.34 16 3 Si 0.99 36.71 29.59 68.60 2.03 38.74 16 4 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 5 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.49 -25.89 9.12 23.52 0.21 -25.68 16 8 H 0.08 4.10 7.90 -2.91 -0.02 4.07 16 9 C 0.13 6.93 5.60 -21.11 -0.12 6.81 16 10 C -0.27 -14.59 8.74 22.60 0.20 -14.39 16 11 C 0.11 5.70 11.10 84.26 0.94 6.64 16 12 N -0.64 -31.14 10.37 -194.47 -2.02 -33.15 16 13 C 0.40 18.19 7.65 132.90 1.02 19.21 16 14 N -0.73 -25.20 5.53 -345.23 -1.91 -27.11 16 15 C 0.14 3.70 4.29 86.38 0.37 4.07 16 16 C -0.09 -1.51 2.30 -10.66 -0.02 -1.54 16 17 H 0.09 1.53 8.13 -2.39 -0.02 1.51 16 18 C -0.13 -1.40 5.32 30.69 0.16 -1.24 16 19 C 0.11 0.88 7.17 86.50 0.62 1.50 16 20 N -0.71 -10.52 5.45 -467.29 -2.55 -13.07 16 21 C 0.52 12.13 7.71 87.71 0.68 12.81 16 22 O -0.61 -20.30 17.78 -3.01 -0.05 -20.36 16 23 C -0.13 -2.73 5.10 29.71 0.15 -2.58 16 24 C -0.35 -17.40 9.12 23.01 0.21 -17.19 16 25 H 0.29 13.30 8.29 -92.71 -0.77 12.53 16 26 H 0.11 6.05 6.20 -2.91 -0.02 6.03 16 27 H 0.14 6.08 8.06 -2.91 -0.02 6.06 16 28 H 0.40 12.65 7.89 -92.71 -0.73 11.92 16 29 H 0.06 1.59 7.93 -2.39 -0.02 1.57 16 30 H 0.05 1.45 7.89 -2.38 -0.02 1.43 16 31 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 33 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.40 5.17 8.80 -92.71 -0.82 4.36 16 36 H 0.10 2.23 8.07 -2.39 -0.02 2.21 16 37 H 0.09 2.17 7.50 -2.39 -0.02 2.15 16 38 H 0.11 4.91 6.71 -2.91 -0.02 4.90 16 Total: -1.00 -70.43 315.31 0.15 -70.28 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.45 Total: 35.32 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 4.86 Total: -9.23 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -6.23 Total: -114.75 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.36 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -70.43 0.15 -70.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154935365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.316 kcal (2) G-P(sol) polarization free energy of solvation -70.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds