Wall clock time and date at job start Mon Mar 30 2020 01:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00232 * 2 1 4 4 H 1.48501 * 109.46932 * 269.99637 * 3 2 1 5 5 H 1.48508 * 109.46949 * 29.99566 * 3 2 1 6 6 H 1.48498 * 109.47417 * 149.99709 * 3 2 1 7 7 C 1.38878 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.36888 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.38218 * 119.99915 * 179.97438 * 9 7 2 11 11 N 1.32490 * 119.83179 * 5.04659 * 10 9 7 12 12 C 1.31781 * 121.77739 * 179.97438 * 11 10 9 13 13 C 1.38461 * 121.22319 * 0.04258 * 12 11 10 14 14 C 1.38345 * 119.51173 * 359.97438 * 13 12 11 15 15 C 1.39973 * 118.37032 * 359.97438 * 14 13 12 16 16 C 1.47444 * 120.61290 * 179.72433 * 15 14 13 17 17 O 1.21606 * 120.00037 * 234.01947 * 16 15 14 18 18 N 1.34780 * 120.00175 * 54.01310 * 16 15 14 19 19 C 1.46927 * 120.62675 * 5.46080 * 18 16 15 20 20 C 1.53625 * 108.54151 * 126.36558 * 19 18 16 21 21 C 1.53045 * 109.24027 * 54.86057 * 20 19 18 22 22 C 1.53041 * 109.53543 * 298.50903 * 21 20 19 23 23 C 1.46923 * 120.63439 * 185.74143 * 18 16 15 24 24 H 0.97006 * 119.99894 * 0.02562 * 1 2 3 25 25 H 0.97007 * 119.99755 * 0.02562 * 9 7 2 26 26 H 1.07993 * 119.38743 * 180.02562 * 12 11 10 27 27 H 1.07993 * 120.24459 * 180.02562 * 13 12 11 28 28 H 1.07997 * 120.81624 * 179.97438 * 14 13 12 29 29 H 1.09001 * 109.58866 * 246.19834 * 19 18 16 30 30 H 1.09001 * 109.58791 * 6.62627 * 19 18 16 31 31 H 1.08994 * 109.63637 * 294.86665 * 20 19 18 32 32 H 1.09004 * 109.42948 * 174.71934 * 20 19 18 33 33 H 1.08998 * 109.46051 * 178.49052 * 21 20 19 34 34 H 1.08997 * 109.46252 * 58.52894 * 21 20 19 35 35 H 1.09005 * 109.49665 * 301.41263 * 22 21 20 36 36 H 1.08993 * 109.49981 * 181.31860 * 22 21 20 37 37 H 1.08998 * 109.58401 * 353.37386 * 23 18 16 38 38 H 1.08999 * 109.58793 * 113.79860 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0094 -1.2027 0.0005 8 1 3.0895 -1.2027 0.0010 9 7 1.3250 -2.3882 0.0005 10 6 2.0161 -3.5852 0.0005 11 7 3.3371 -3.5835 0.1016 12 6 4.0342 -4.7019 0.1061 13 6 3.4132 -5.9352 0.0038 14 6 2.0354 -5.9975 -0.1047 15 6 1.3134 -4.7983 -0.1064 16 6 -0.1561 -4.8068 -0.2256 17 8 -0.6995 -4.1522 -1.0945 18 7 -0.8973 -5.5402 0.6284 19 6 -0.2667 -6.2406 1.7556 20 6 -0.9856 -5.8302 3.0497 21 6 -2.4847 -6.1008 2.9014 22 6 -3.0452 -5.2602 1.7520 23 6 -2.3504 -5.6595 0.4464 24 1 -0.4850 0.8401 -0.0004 25 1 0.3549 -2.3882 -0.0002 26 1 5.1098 -4.6555 0.1908 27 1 3.9999 -6.8418 0.0095 28 1 1.5293 -6.9480 -0.1860 29 1 -0.3540 -7.3176 1.6116 30 1 0.7854 -5.9621 1.8163 31 1 -0.8244 -4.7687 3.2374 32 1 -0.5918 -6.4116 3.8833 33 1 -2.9948 -5.8359 3.8275 34 1 -2.6436 -7.1581 2.6892 35 1 -2.8646 -4.2040 1.9520 36 1 -4.1172 -5.4357 1.6620 37 1 -2.6735 -4.9974 -0.3569 38 1 -2.6041 -6.6900 0.1978 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155531386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:06 Heat of formation + Delta-G solvation = -2.733051 kcal Electronic energy + Delta-G solvation = -21667.952149 eV Core-core repulsion = 18509.819523 eV Total energy + Delta-G solvation = -3158.132626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.05084 -38.51968 -36.78384 -35.29219 -32.80915 -32.06676 -31.51658 -30.58659 -28.70686 -25.44010 -24.85147 -23.43176 -22.82033 -21.38312 -20.66208 -18.91934 -17.89158 -16.91063 -16.80288 -15.73847 -15.23023 -14.70154 -14.57924 -14.39526 -14.14353 -13.76387 -13.49264 -13.32658 -13.22490 -13.09134 -12.50429 -12.25878 -12.05979 -11.70477 -11.46077 -11.33347 -11.14021 -10.89036 -10.61906 -10.53729 -10.46955 -10.38381 -10.35400 -9.35707 -8.94209 -8.71872 -8.33567 -8.21001 -7.07345 -6.65249 -3.81613 1.94229 2.43410 3.15091 3.17209 3.21494 3.31709 3.53567 4.00510 4.65734 4.81304 4.86961 4.91482 4.95689 5.19735 5.23660 5.34325 5.41209 5.54281 5.62880 5.65868 5.75296 5.81093 5.91213 5.96433 6.06449 6.10760 6.15889 6.21564 6.41062 6.45140 6.55839 6.86922 6.96603 7.08906 7.31261 7.49485 7.83479 7.88578 8.59848 8.80472 8.91790 9.21271 9.64828 10.48784 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.006701 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.986554 B = 4177.689711 C = 5303.006421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.019 3.981 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.288 4.288 8 H 0.118 0.882 9 N -0.499 5.499 10 C 0.375 3.625 11 N -0.543 5.543 12 C 0.182 3.818 13 C -0.323 4.323 14 C 0.014 3.986 15 C -0.311 4.311 16 C 0.578 3.422 17 O -0.542 6.542 18 N -0.614 5.614 19 C 0.109 3.891 20 C -0.137 4.137 21 C -0.117 4.117 22 C -0.135 4.135 23 C 0.112 3.888 24 H 0.279 0.721 25 H 0.413 0.587 26 H 0.138 0.862 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -11.985 5.687 13.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.186 4.186 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.419 4.419 8 H 0.135 0.865 9 N -0.100 5.100 10 C 0.128 3.872 11 N -0.261 5.261 12 C 0.011 3.989 13 C -0.350 4.350 14 C -0.012 4.012 15 C -0.325 4.325 16 C 0.369 3.631 17 O -0.419 6.419 18 N -0.349 5.349 19 C -0.014 4.014 20 C -0.175 4.175 21 C -0.154 4.154 22 C -0.174 4.174 23 C -0.011 4.011 24 H 0.089 0.911 25 H 0.251 0.749 26 H 0.155 0.845 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.272 -10.222 5.273 11.724 hybrid contribution -0.544 -0.145 -0.012 0.563 sum -2.816 -10.367 5.261 11.962 Atomic orbital electron populations 1.69708 1.06267 1.29086 1.45899 1.25557 0.95782 1.00570 0.96701 0.85692 0.79222 0.79744 0.78762 1.19959 1.20632 1.18892 1.20116 0.94053 0.81947 1.45760 0.86457 1.41118 1.09008 1.02280 1.57606 1.17840 0.87982 0.84867 0.96530 1.67206 1.06052 1.30430 1.22424 1.22282 0.98617 0.87586 0.90408 1.21056 0.94509 0.98309 1.21085 1.20926 0.93950 0.95159 0.91143 1.19316 0.91887 0.94226 1.27064 1.18368 0.87012 0.77461 0.80308 1.90769 1.73761 1.42199 1.35154 1.48040 1.07136 1.51119 1.28582 1.21837 0.98715 0.95720 0.85139 1.22006 0.95551 1.02521 0.97411 1.21497 0.95809 0.99754 0.98382 1.21913 0.99422 1.00966 0.95074 1.21491 0.80214 1.01088 0.98267 0.91138 0.74890 0.84509 0.86990 0.87073 0.92106 0.88698 0.91298 0.91071 0.92047 0.92075 0.91262 0.91173 0.89068 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.42 13.05 55.49 0.72 -23.70 16 2 C 0.02 0.52 5.50 -17.45 -0.10 0.42 16 3 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.29 -7.94 9.70 -15.06 -0.15 -8.08 16 8 H 0.12 3.20 7.08 -52.48 -0.37 2.83 16 9 N -0.50 -13.56 5.26 -10.95 -0.06 -13.62 16 10 C 0.37 9.23 7.43 -155.15 -1.15 8.08 16 11 N -0.54 -12.64 9.08 -12.18 -0.11 -12.75 16 12 C 0.18 3.41 11.17 -17.49 -0.20 3.21 16 13 C -0.32 -5.48 10.09 -39.46 -0.40 -5.88 16 14 C 0.01 0.25 7.92 -38.89 -0.31 -0.06 16 15 C -0.31 -6.71 4.63 -104.61 -0.48 -7.19 16 16 C 0.58 12.41 6.46 -12.51 -0.08 12.33 16 17 O -0.54 -13.70 15.39 5.27 0.08 -13.62 16 18 N -0.61 -10.37 2.97 -173.76 -0.52 -10.89 16 19 C 0.11 1.50 5.64 -3.49 -0.02 1.48 16 20 C -0.14 -1.67 6.10 -26.38 -0.16 -1.83 16 21 C -0.12 -1.27 5.88 -26.69 -0.16 -1.42 16 22 C -0.14 -1.70 6.08 -26.61 -0.16 -1.86 16 23 C 0.11 1.64 6.44 -3.71 -0.02 1.62 16 24 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.41 11.73 6.02 -40.82 -0.25 11.49 16 26 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.11 1.67 7.79 -52.49 -0.41 1.26 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.44 5.37 -51.93 -0.28 1.16 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.53 7.00 -51.93 -0.36 1.17 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -31.04 312.47 -8.61 -39.65 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -3.38 Total: 0.81 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.04 Total: -60.95 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.62 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.04 -8.61 -39.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.917 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds