Wall clock time and date at job start Mon Mar 30 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00232 * 2 1 4 4 H 1.48501 * 109.46932 * 269.99637 * 3 2 1 5 5 H 1.48508 * 109.46949 * 29.99566 * 3 2 1 6 6 H 1.48498 * 109.47417 * 149.99709 * 3 2 1 7 7 C 1.38878 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.36888 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.38218 * 119.99915 * 179.97438 * 9 7 2 11 11 N 1.32490 * 119.83179 * 5.04659 * 10 9 7 12 12 C 1.31781 * 121.77739 * 179.97438 * 11 10 9 13 13 C 1.38461 * 121.22319 * 0.04258 * 12 11 10 14 14 C 1.38345 * 119.51173 * 359.97438 * 13 12 11 15 15 C 1.39973 * 118.37032 * 359.97438 * 14 13 12 16 16 C 1.47444 * 120.61290 * 179.72433 * 15 14 13 17 17 O 1.21606 * 120.00037 * 234.01947 * 16 15 14 18 18 N 1.34780 * 120.00175 * 54.01310 * 16 15 14 19 19 C 1.46927 * 120.62675 * 5.46080 * 18 16 15 20 20 C 1.53625 * 108.54151 * 126.36558 * 19 18 16 21 21 C 1.53045 * 109.24027 * 54.86057 * 20 19 18 22 22 C 1.53041 * 109.53543 * 298.50903 * 21 20 19 23 23 C 1.46923 * 120.63439 * 185.74143 * 18 16 15 24 24 H 0.97006 * 119.99894 * 0.02562 * 1 2 3 25 25 H 0.97007 * 119.99755 * 0.02562 * 9 7 2 26 26 H 1.07993 * 119.38743 * 180.02562 * 12 11 10 27 27 H 1.07993 * 120.24459 * 180.02562 * 13 12 11 28 28 H 1.07997 * 120.81624 * 179.97438 * 14 13 12 29 29 H 1.09001 * 109.58866 * 246.19834 * 19 18 16 30 30 H 1.09001 * 109.58791 * 6.62627 * 19 18 16 31 31 H 1.08994 * 109.63637 * 294.86665 * 20 19 18 32 32 H 1.09004 * 109.42948 * 174.71934 * 20 19 18 33 33 H 1.08998 * 109.46051 * 178.49052 * 21 20 19 34 34 H 1.08997 * 109.46252 * 58.52894 * 21 20 19 35 35 H 1.09005 * 109.49665 * 301.41263 * 22 21 20 36 36 H 1.08993 * 109.49981 * 181.31860 * 22 21 20 37 37 H 1.08998 * 109.58401 * 353.37386 * 23 18 16 38 38 H 1.08999 * 109.58793 * 113.79860 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0094 -1.2027 0.0005 8 1 3.0895 -1.2027 0.0010 9 7 1.3250 -2.3882 0.0005 10 6 2.0161 -3.5852 0.0005 11 7 3.3371 -3.5835 0.1016 12 6 4.0342 -4.7019 0.1061 13 6 3.4132 -5.9352 0.0038 14 6 2.0354 -5.9975 -0.1047 15 6 1.3134 -4.7983 -0.1064 16 6 -0.1561 -4.8068 -0.2256 17 8 -0.6995 -4.1522 -1.0945 18 7 -0.8973 -5.5402 0.6284 19 6 -0.2667 -6.2406 1.7556 20 6 -0.9856 -5.8302 3.0497 21 6 -2.4847 -6.1008 2.9014 22 6 -3.0452 -5.2602 1.7520 23 6 -2.3504 -5.6595 0.4464 24 1 -0.4850 0.8401 -0.0004 25 1 0.3549 -2.3882 -0.0002 26 1 5.1098 -4.6555 0.1908 27 1 3.9999 -6.8418 0.0095 28 1 1.5293 -6.9480 -0.1860 29 1 -0.3540 -7.3176 1.6116 30 1 0.7854 -5.9621 1.8163 31 1 -0.8244 -4.7687 3.2374 32 1 -0.5918 -6.4116 3.8833 33 1 -2.9948 -5.8359 3.8275 34 1 -2.6436 -7.1581 2.6892 35 1 -2.8646 -4.2040 1.9520 36 1 -4.1172 -5.4357 1.6620 37 1 -2.6735 -4.9974 -0.3569 38 1 -2.6041 -6.6900 0.1978 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:05 Heat of formation + Delta-G solvation = -22.875214 kcal Electronic energy + Delta-G solvation = -21668.825579 eV Core-core repulsion = 18509.819523 eV Total energy + Delta-G solvation = -3159.006056 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.61398 -40.06295 -38.23175 -37.06700 -34.20796 -33.90780 -32.90497 -31.83648 -30.40637 -26.93418 -26.56216 -24.76828 -24.09152 -23.05757 -21.90799 -20.30167 -19.70486 -18.58442 -18.27279 -17.27717 -16.93336 -16.33313 -15.90869 -15.74659 -15.39147 -15.22893 -14.97215 -14.90934 -14.60162 -14.44343 -13.92346 -13.74668 -13.49245 -13.24085 -13.07630 -13.01078 -12.45874 -12.24885 -12.14775 -12.10578 -11.86097 -11.62376 -11.51315 -11.00273 -10.73558 -10.39543 -9.96795 -9.60266 -8.83373 -8.54890 -5.84096 0.33213 0.82652 1.35790 1.45589 1.51926 1.72844 2.14328 2.23050 2.87394 3.07812 3.41568 3.65364 3.86519 3.97322 4.02223 4.13133 4.16154 4.25855 4.34397 4.54974 4.57220 4.61834 4.74826 4.84171 4.89917 4.92188 5.00433 5.08226 5.12804 5.22414 5.31555 5.34484 5.43966 5.53265 5.66735 5.72983 6.15818 6.40528 6.66394 7.09517 7.22226 7.37513 7.81779 8.62343 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.006701 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.986554 B = 4177.689711 C = 5303.006421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.035 4.035 3 Si 1.009 2.991 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.313 4.313 8 H 0.109 0.891 9 N -0.545 5.545 10 C 0.371 3.629 11 N -0.580 5.580 12 C 0.168 3.832 13 C -0.283 4.283 14 C 0.018 3.982 15 C -0.322 4.322 16 C 0.568 3.432 17 O -0.596 6.596 18 N -0.605 5.605 19 C 0.103 3.897 20 C -0.136 4.136 21 C -0.110 4.110 22 C -0.133 4.133 23 C 0.106 3.894 24 H 0.277 0.723 25 H 0.398 0.602 26 H 0.178 0.822 27 H 0.165 0.835 28 H 0.152 0.848 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 -16.281 6.914 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.234 4.234 3 Si 0.831 3.169 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.443 4.443 8 H 0.127 0.873 9 N -0.150 5.150 10 C 0.127 3.873 11 N -0.300 5.300 12 C 0.003 3.997 13 C -0.308 4.308 14 C -0.007 4.007 15 C -0.336 4.336 16 C 0.359 3.641 17 O -0.477 6.477 18 N -0.338 5.338 19 C -0.018 4.018 20 C -0.174 4.174 21 C -0.147 4.147 22 C -0.171 4.171 23 C -0.016 4.016 24 H 0.086 0.914 25 H 0.234 0.766 26 H 0.195 0.805 27 H 0.183 0.817 28 H 0.170 0.830 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.847 -14.641 6.548 16.061 hybrid contribution -0.794 0.624 -0.359 1.072 sum -1.641 -14.018 6.189 15.411 Atomic orbital electron populations 1.69835 1.07752 1.29428 1.49572 1.26464 0.96581 1.03650 0.96684 0.84688 0.78027 0.75479 0.78705 1.19715 1.20003 1.18067 1.20168 0.93691 0.83065 1.47352 0.87326 1.41044 1.08117 1.02944 1.62919 1.18446 0.88955 0.85362 0.94524 1.67244 1.05750 1.33163 1.23809 1.23141 1.00487 0.87254 0.88860 1.21711 0.94348 0.99467 1.15308 1.21426 0.94531 0.95247 0.89541 1.19645 0.92531 0.94712 1.26679 1.18519 0.87405 0.77632 0.80538 1.90739 1.74578 1.44515 1.37887 1.48129 1.08013 1.49606 1.28040 1.22136 0.97764 0.97485 0.84444 1.22019 0.96894 1.00833 0.97634 1.21496 0.94421 1.00855 0.97969 1.21908 1.01022 0.99272 0.94871 1.21711 0.78920 1.02427 0.98512 0.91413 0.76602 0.80518 0.81735 0.83041 0.87955 0.90251 0.94874 0.87952 0.90621 0.89151 0.94880 0.88513 0.92359 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.05 21.66 0.28 -55.89 16 2 C -0.03 -1.99 5.50 84.90 0.47 -1.52 16 3 Si 1.01 44.73 29.55 68.60 2.03 46.76 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.31 -18.50 9.70 84.06 0.82 -17.69 16 8 H 0.11 6.33 7.08 -2.91 -0.02 6.31 16 9 N -0.54 -31.84 5.26 -188.56 -0.99 -32.83 16 10 C 0.37 18.85 7.43 133.66 0.99 19.85 16 11 N -0.58 -26.98 9.08 -192.43 -1.75 -28.73 16 12 C 0.17 5.76 11.17 84.75 0.95 6.71 16 13 C -0.28 -8.05 10.09 22.35 0.23 -7.83 16 14 C 0.02 0.58 7.92 22.72 0.18 0.76 16 15 C -0.32 -13.84 4.63 -19.86 -0.09 -13.93 16 16 C 0.57 25.07 6.46 86.67 0.56 25.63 16 17 O -0.60 -32.16 15.39 -4.05 -0.06 -32.23 16 18 N -0.61 -20.02 2.97 -821.92 -2.44 -22.45 16 19 C 0.10 2.52 5.64 86.51 0.49 3.01 16 20 C -0.14 -2.98 6.10 30.82 0.19 -2.79 16 21 C -0.11 -2.02 5.88 30.62 0.18 -1.84 16 22 C -0.13 -3.19 6.08 30.67 0.19 -3.00 16 23 C 0.11 3.03 6.44 86.36 0.56 3.58 16 24 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 25 H 0.40 24.84 6.02 -92.70 -0.56 24.28 16 26 H 0.18 4.54 8.06 -2.91 -0.02 4.51 16 27 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.15 3.65 7.79 -2.91 -0.02 3.63 16 29 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 2.19 5.37 -2.39 -0.01 2.18 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 2.06 7.00 -2.39 -0.02 2.04 16 38 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -77.40 312.47 3.28 -74.12 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: 0.52 Total: 40.30 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.69 Total: 10.95 kcal Atomic # 7 Polarization: -135.00 SS G_CDS: -4.89 Total: -139.90 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.06 Total: -32.23 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -77.40 3.28 -74.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.242 kcal (2) G-P(sol) polarization free energy of solvation -77.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds