Wall clock time and date at job start Mon Mar 30 2020 02:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86796 * 119.99884 * 2 1 4 4 H 1.48499 * 109.47335 * 274.56740 * 3 2 1 5 5 H 1.48505 * 109.47116 * 34.57180 * 3 2 1 6 6 H 1.48507 * 109.47362 * 154.56505 * 3 2 1 7 7 C 1.40022 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99843 * 162.80333 * 7 2 1 9 9 C 1.41550 * 119.99883 * 343.08623 * 7 2 1 10 10 C 1.41189 * 120.99191 * 335.74988 * 9 7 2 11 11 C 1.36556 * 119.14194 * 180.02562 * 10 9 7 12 12 N 1.32094 * 121.27103 * 359.97438 * 11 10 9 13 13 C 1.32532 * 122.22027 * 0.02715 * 12 11 10 14 14 N 1.39080 * 119.65878 * 179.97438 * 13 12 11 15 15 C 1.46498 * 119.99797 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46814 * 179.97438 * 15 14 13 17 17 C 1.55999 * 116.12715 * 303.98372 * 16 15 14 18 18 N 1.48335 * 104.99160 * 201.22651 * 17 16 15 19 19 C 1.49796 * 105.66778 * 357.49398 * 18 17 16 20 20 H 1.08993 * 116.41530 * 165.52158 * 19 18 17 21 21 C 1.56098 * 103.75528 * 294.97360 * 19 18 17 22 22 O 1.45535 * 116.02375 * 66.90761 * 16 15 14 23 23 C 1.57071 * 116.36803 * 187.01516 * 16 15 14 24 24 C 1.38744 * 120.67809 * 359.70929 * 13 12 11 25 25 H 0.97000 * 119.99822 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.42977 * 0.03053 * 10 9 7 27 27 H 1.08009 * 119.36294 * 180.02562 * 11 10 9 28 28 H 0.97000 * 119.99778 * 359.97438 * 14 13 12 29 29 H 1.09001 * 109.46803 * 299.99680 * 15 14 13 30 30 H 1.09003 * 109.47059 * 59.99784 * 15 14 13 31 31 H 1.08998 * 110.33826 * 320.10269 * 17 16 15 32 32 H 1.08999 * 110.33820 * 82.34927 * 17 16 15 33 33 H 1.00906 * 110.99953 * 237.07673 * 18 17 16 34 34 H 1.09006 * 110.26032 * 190.45627 * 21 19 18 35 35 H 1.08999 * 110.26128 * 312.40431 * 21 19 18 36 36 H 1.09005 * 112.44662 * 294.45688 * 23 16 15 37 37 H 1.08994 * 112.44985 * 62.12436 * 23 16 15 38 38 H 1.08001 * 120.66359 * 180.28817 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3924 2.1022 -1.3956 5 1 1.4905 2.6228 0.7945 6 1 3.5840 1.4143 0.6013 7 6 2.0076 -1.2126 0.0005 8 1 3.0514 -1.2336 -0.2760 9 6 1.3458 -2.4118 0.3577 10 6 0.1961 -2.3914 1.1770 11 6 -0.4122 -3.5709 1.4987 12 7 0.0542 -4.7255 1.0580 13 6 1.1288 -4.8053 0.2865 14 7 1.5740 -6.0496 -0.1470 15 6 2.7607 -6.1465 -1.0005 16 6 3.0326 -7.6154 -1.3309 17 6 3.2027 -8.5737 -0.1118 18 7 3.9478 -9.7414 -0.6426 19 6 4.1276 -9.4754 -2.1057 20 1 4.8580 -10.0957 -2.6251 21 6 2.6715 -9.4933 -2.6679 22 8 2.0422 -8.2755 -2.1684 23 6 4.3683 -7.9221 -2.0984 24 6 1.8111 -3.6599 -0.0978 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1971 -1.4551 1.5445 27 1 -1.2922 -3.5594 2.1249 28 1 1.0986 -6.8533 0.1159 29 1 2.5908 -5.5915 -1.9231 30 1 3.6199 -5.7270 -0.4770 31 1 3.7754 -8.0856 0.6768 32 1 2.2282 -8.8852 0.2641 33 1 3.4348 -10.5970 -0.4910 34 1 2.6877 -9.4933 -3.7579 35 1 2.1351 -10.3675 -2.2989 36 1 4.3783 -7.4977 -3.1024 37 1 5.2517 -7.6404 -1.5254 38 1 2.6841 -3.7249 -0.7303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155543755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:37 Heat of formation + Delta-G solvation = 17.714333 kcal Electronic energy + Delta-G solvation = -20882.615065 eV Core-core repulsion = 17725.369104 eV Total energy + Delta-G solvation = -3157.245961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06201 -38.38173 -35.23053 -34.36748 -33.82137 -30.79553 -30.49827 -29.76890 -27.84991 -25.86314 -25.10933 -24.72954 -21.53511 -21.07623 -20.76861 -19.48647 -17.70221 -17.29306 -16.60700 -15.72621 -15.50183 -14.98845 -14.82035 -14.71868 -13.93590 -13.62481 -13.40626 -12.97989 -12.83696 -12.71397 -12.42843 -12.32724 -12.19208 -12.03746 -11.72420 -11.52513 -11.37972 -11.26586 -11.11076 -10.83482 -10.29087 -9.87630 -9.76888 -9.38857 -8.93942 -8.62874 -7.93229 -7.87050 -6.81467 -6.44191 -4.53138 2.81633 3.05052 3.08233 3.10855 3.36743 3.40818 3.80007 3.88582 3.91668 4.00011 4.39647 4.50181 4.65803 4.73934 5.00247 5.19874 5.28493 5.33116 5.54343 5.62365 5.64910 5.71893 5.83465 5.88764 5.97272 6.15876 6.23194 6.52054 6.77766 6.92181 6.96036 6.97096 7.03322 7.29208 7.58271 7.85708 8.06996 8.11048 8.46847 8.72678 8.85988 8.92909 9.80801 10.13895 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.003858 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.095500 B = 7255.460797 C = 7807.623479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.157 3.843 10 C -0.245 4.245 11 C 0.116 3.884 12 N -0.623 5.623 13 C 0.399 3.601 14 N -0.740 5.740 15 C 0.180 3.820 16 C 0.071 3.929 17 C 0.023 3.977 18 N -0.670 5.670 19 C 0.033 3.967 20 H 0.134 0.866 21 C 0.010 3.990 22 O -0.367 6.367 23 C -0.143 4.143 24 C -0.336 4.336 25 H 0.281 0.719 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.392 0.608 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.338 0.662 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.482 -13.050 -3.930 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.149 3.851 10 C -0.269 4.269 11 C -0.033 4.033 12 N -0.347 5.347 13 C 0.168 3.832 14 N -0.377 5.377 15 C 0.054 3.946 16 C 0.031 3.969 17 C -0.107 4.107 18 N -0.299 5.299 19 C -0.076 4.076 20 H 0.152 0.848 21 C -0.068 4.068 22 O -0.287 6.287 23 C -0.181 4.181 24 C -0.363 4.363 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.225 0.775 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.155 0.845 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.420 -13.325 -3.585 15.668 hybrid contribution -0.314 0.942 -0.610 1.165 sum 7.106 -12.383 -4.195 14.881 Atomic orbital electron populations 1.69815 1.07708 1.29349 1.34052 1.25955 0.94711 1.01417 0.91932 0.86293 0.80784 0.80518 0.79095 1.19517 1.19947 1.18333 1.19571 0.97875 0.90885 1.40549 0.90276 1.17588 0.89773 0.91615 0.86161 1.21755 1.01654 0.98032 1.05477 1.21353 0.97255 0.87879 0.96818 1.66730 1.16647 1.29889 1.21395 1.17900 0.90164 0.84370 0.90755 1.43927 1.31079 1.05799 1.56943 1.20568 0.89426 0.89531 0.95087 1.24489 0.87749 0.93694 0.91004 1.23611 0.97916 0.91720 0.97419 1.63324 1.49842 1.04841 1.11858 1.24908 0.95698 0.97403 0.89611 0.84802 1.24588 0.93906 0.88422 0.99879 1.89561 1.36543 1.35886 1.66700 1.24213 0.98023 0.94178 1.01685 1.21122 1.07975 0.92265 1.14920 0.90752 0.86031 0.86453 0.77453 0.91449 0.90639 0.89209 0.91641 0.84547 0.90630 0.91268 0.89097 0.88390 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.18 10.95 55.55 0.61 -19.57 16 2 C 0.08 1.98 5.19 -17.34 -0.09 1.89 16 3 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.46 -12.14 9.11 -37.65 -0.34 -12.48 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.16 4.26 5.60 -106.56 -0.60 3.67 16 10 C -0.24 -6.51 8.74 -39.07 -0.34 -6.85 16 11 C 0.12 2.90 11.10 -18.05 -0.20 2.70 16 12 N -0.62 -15.64 10.37 -12.82 -0.13 -15.77 16 13 C 0.40 9.54 7.65 -154.98 -1.19 8.35 16 14 N -0.74 -14.29 5.59 -60.47 -0.34 -14.63 16 15 C 0.18 2.85 4.96 -4.04 -0.02 2.83 16 16 C 0.07 0.92 1.47 -86.81 -0.13 0.79 16 17 C 0.02 0.27 6.15 -1.43 -0.01 0.26 16 18 N -0.67 -6.68 7.32 -97.81 -0.72 -7.40 16 19 C 0.03 0.29 5.90 -62.16 -0.37 -0.07 16 20 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 21 C 0.01 0.10 7.12 38.82 0.28 0.38 16 22 O -0.37 -5.25 11.29 -35.23 -0.40 -5.64 16 23 C -0.14 -1.45 6.58 -22.25 -0.15 -1.60 16 24 C -0.34 -8.45 9.12 -38.44 -0.35 -8.80 16 25 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 26 H 0.12 3.27 6.23 -52.49 -0.33 2.95 16 27 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 28 H 0.39 7.29 8.10 -40.82 -0.33 6.96 16 29 H 0.07 1.14 7.92 -51.93 -0.41 0.73 16 30 H 0.08 1.15 7.94 -51.93 -0.41 0.74 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.82 7.97 -51.93 -0.41 0.40 16 33 H 0.34 2.90 8.54 -39.29 -0.34 2.57 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.10 2.25 6.71 -52.49 -0.35 1.90 16 LS Contribution 311.36 15.07 4.69 4.69 Total: -1.00 -30.03 311.36 -9.89 -39.92 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.08 Total: 13.99 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -3.50 Total: -8.93 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.58 Total: -57.37 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.40 Total: -5.64 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.03 -9.89 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155543755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.637 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds