Wall clock time and date at job start Mon Mar 30 2020 02:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86796 * 119.99884 * 2 1 4 4 H 1.48499 * 109.47335 * 274.56740 * 3 2 1 5 5 H 1.48505 * 109.47116 * 34.57180 * 3 2 1 6 6 H 1.48507 * 109.47362 * 154.56505 * 3 2 1 7 7 C 1.40022 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99843 * 162.80333 * 7 2 1 9 9 C 1.41550 * 119.99883 * 343.08623 * 7 2 1 10 10 C 1.41189 * 120.99191 * 335.74988 * 9 7 2 11 11 C 1.36556 * 119.14194 * 180.02562 * 10 9 7 12 12 N 1.32094 * 121.27103 * 359.97438 * 11 10 9 13 13 C 1.32532 * 122.22027 * 0.02715 * 12 11 10 14 14 N 1.39080 * 119.65878 * 179.97438 * 13 12 11 15 15 C 1.46498 * 119.99797 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46814 * 179.97438 * 15 14 13 17 17 C 1.55999 * 116.12715 * 303.98372 * 16 15 14 18 18 N 1.48335 * 104.99160 * 201.22651 * 17 16 15 19 19 C 1.49796 * 105.66778 * 357.49398 * 18 17 16 20 20 H 1.08993 * 116.41530 * 165.52158 * 19 18 17 21 21 C 1.56098 * 103.75528 * 294.97360 * 19 18 17 22 22 O 1.45535 * 116.02375 * 66.90761 * 16 15 14 23 23 C 1.57071 * 116.36803 * 187.01516 * 16 15 14 24 24 C 1.38744 * 120.67809 * 359.70929 * 13 12 11 25 25 H 0.97000 * 119.99822 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.42977 * 0.03053 * 10 9 7 27 27 H 1.08009 * 119.36294 * 180.02562 * 11 10 9 28 28 H 0.97000 * 119.99778 * 359.97438 * 14 13 12 29 29 H 1.09001 * 109.46803 * 299.99680 * 15 14 13 30 30 H 1.09003 * 109.47059 * 59.99784 * 15 14 13 31 31 H 1.08998 * 110.33826 * 320.10269 * 17 16 15 32 32 H 1.08999 * 110.33820 * 82.34927 * 17 16 15 33 33 H 1.00906 * 110.99953 * 237.07673 * 18 17 16 34 34 H 1.09006 * 110.26032 * 190.45627 * 21 19 18 35 35 H 1.08999 * 110.26128 * 312.40431 * 21 19 18 36 36 H 1.09005 * 112.44662 * 294.45688 * 23 16 15 37 37 H 1.08994 * 112.44985 * 62.12436 * 23 16 15 38 38 H 1.08001 * 120.66359 * 180.28817 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3924 2.1022 -1.3956 5 1 1.4905 2.6228 0.7945 6 1 3.5840 1.4143 0.6013 7 6 2.0076 -1.2126 0.0005 8 1 3.0514 -1.2336 -0.2760 9 6 1.3458 -2.4118 0.3577 10 6 0.1961 -2.3914 1.1770 11 6 -0.4122 -3.5709 1.4987 12 7 0.0542 -4.7255 1.0580 13 6 1.1288 -4.8053 0.2865 14 7 1.5740 -6.0496 -0.1470 15 6 2.7607 -6.1465 -1.0005 16 6 3.0326 -7.6154 -1.3309 17 6 3.2027 -8.5737 -0.1118 18 7 3.9478 -9.7414 -0.6426 19 6 4.1276 -9.4754 -2.1057 20 1 4.8580 -10.0957 -2.6251 21 6 2.6715 -9.4933 -2.6679 22 8 2.0422 -8.2755 -2.1684 23 6 4.3683 -7.9221 -2.0984 24 6 1.8111 -3.6599 -0.0978 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1971 -1.4551 1.5445 27 1 -1.2922 -3.5594 2.1249 28 1 1.0986 -6.8533 0.1159 29 1 2.5908 -5.5915 -1.9231 30 1 3.6199 -5.7270 -0.4770 31 1 3.7754 -8.0856 0.6768 32 1 2.2282 -8.8852 0.2641 33 1 3.4348 -10.5970 -0.4910 34 1 2.6877 -9.4933 -3.7579 35 1 2.1351 -10.3675 -2.2989 36 1 4.3783 -7.4977 -3.1024 37 1 5.2517 -7.6404 -1.5254 38 1 2.6841 -3.7249 -0.7303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155543755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:37 Heat of formation + Delta-G solvation = -3.966322 kcal Electronic energy + Delta-G solvation = -20883.555209 eV Core-core repulsion = 17725.369104 eV Total energy + Delta-G solvation = -3158.186105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.96616 -40.26681 -36.86761 -35.66726 -35.28549 -32.58152 -31.97066 -30.60027 -29.46450 -27.82291 -26.40968 -25.65100 -23.30263 -22.67954 -21.95909 -20.49957 -19.48716 -18.29735 -17.93218 -17.20900 -16.81720 -16.52677 -16.30594 -15.81932 -15.74061 -15.17878 -14.96811 -14.61307 -14.21990 -13.90876 -13.71666 -13.50546 -13.29408 -13.11761 -13.00026 -12.85882 -12.72203 -12.57613 -12.39873 -12.28103 -11.98569 -11.76143 -11.23668 -10.75632 -10.69691 -9.92825 -9.84453 -9.45757 -8.69984 -8.26286 -6.54571 0.97885 1.18362 1.40275 1.54195 1.61557 2.20104 2.35266 2.54739 2.81449 3.05402 3.22406 3.38456 3.52987 3.81329 3.82656 4.11925 4.24246 4.34888 4.41451 4.50526 4.59607 4.63110 4.77010 4.84678 4.87650 4.89395 4.99026 5.02751 5.05546 5.15123 5.31071 5.40141 5.61020 5.62821 5.90956 6.10813 6.23205 6.35368 6.54190 6.86563 6.88673 7.01614 7.87038 8.28140 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.003858 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.095500 B = 7255.460797 C = 7807.623479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.081 0.919 9 C 0.129 3.871 10 C -0.269 4.269 11 C 0.116 3.884 12 N -0.636 5.636 13 C 0.398 3.602 14 N -0.729 5.729 15 C 0.177 3.823 16 C 0.065 3.935 17 C 0.028 3.972 18 N -0.669 5.669 19 C 0.048 3.952 20 H 0.168 0.832 21 C 0.004 3.996 22 O -0.401 6.401 23 C -0.139 4.139 24 C -0.355 4.355 25 H 0.292 0.708 26 H 0.111 0.889 27 H 0.144 0.856 28 H 0.396 0.604 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.348 0.652 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.901 -13.716 -4.644 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.120 3.880 10 C -0.294 4.294 11 C -0.034 4.034 12 N -0.361 5.361 13 C 0.166 3.834 14 N -0.365 5.365 15 C 0.052 3.948 16 C 0.025 3.975 17 C -0.102 4.102 18 N -0.299 5.299 19 C -0.061 4.061 20 H 0.185 0.815 21 C -0.074 4.074 22 O -0.322 6.322 23 C -0.177 4.177 24 C -0.382 4.382 25 H 0.103 0.897 26 H 0.129 0.871 27 H 0.161 0.839 28 H 0.230 0.770 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.165 0.835 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.851 -14.052 -4.319 17.160 hybrid contribution -0.797 1.052 -0.432 1.389 sum 8.054 -13.001 -4.751 16.014 Atomic orbital electron populations 1.69859 1.09276 1.31002 1.33709 1.26880 0.95493 1.04774 0.90694 0.85115 0.79200 0.75408 0.79513 1.18560 1.18829 1.18013 1.19878 0.98253 0.91930 1.41872 0.90059 1.18002 0.90438 0.92798 0.86713 1.21733 1.02569 0.98196 1.06915 1.21742 0.97670 0.87488 0.96457 1.66872 1.17280 1.29761 1.22147 1.18171 0.89568 0.85768 0.89939 1.44018 1.31694 1.04317 1.56436 1.20692 0.88105 0.92115 0.93864 1.24354 0.89166 0.91848 0.92113 1.23467 0.97548 0.92303 0.96847 1.63333 1.49340 1.04442 1.12745 1.25079 0.95501 0.96678 0.88792 0.81486 1.24828 0.94650 0.87135 1.00757 1.89517 1.37928 1.37631 1.67084 1.24245 0.96342 0.95440 1.01684 1.21247 1.08823 0.92286 1.15794 0.89747 0.87066 0.83881 0.76992 0.92687 0.89993 0.89985 0.92613 0.83456 0.89276 0.90358 0.88351 0.87775 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.32 10.95 21.84 0.24 -42.08 16 2 C 0.04 1.94 5.19 85.29 0.44 2.38 16 3 Si 0.99 37.30 29.59 68.60 2.03 39.33 16 4 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 7 C -0.49 -26.47 9.11 23.52 0.21 -26.26 16 8 H 0.08 4.20 7.90 -2.91 -0.02 4.17 16 9 C 0.13 7.20 5.60 -21.12 -0.12 7.08 16 10 C -0.27 -14.74 8.74 22.60 0.20 -14.54 16 11 C 0.12 5.88 11.10 84.26 0.94 6.82 16 12 N -0.64 -32.27 10.37 -194.47 -2.02 -34.28 16 13 C 0.40 19.32 7.65 132.90 1.02 20.34 16 14 N -0.73 -28.37 5.59 -345.24 -1.93 -30.30 16 15 C 0.18 5.63 4.96 86.38 0.43 6.06 16 16 C 0.07 1.63 1.47 -8.32 -0.01 1.62 16 17 C 0.03 0.65 6.15 87.07 0.54 1.18 16 18 N -0.67 -11.74 7.32 -463.37 -3.39 -15.13 16 19 C 0.05 0.70 5.90 46.90 0.28 0.98 16 20 H 0.17 1.37 8.14 -2.39 -0.02 1.35 16 21 C 0.00 0.07 7.12 73.06 0.52 0.59 16 22 O -0.40 -11.06 11.29 -148.98 -1.68 -12.74 16 23 C -0.14 -2.53 6.58 33.50 0.22 -2.31 16 24 C -0.35 -18.30 9.12 23.01 0.21 -18.09 16 25 H 0.29 13.56 8.29 -92.71 -0.77 12.79 16 26 H 0.11 6.20 6.23 -2.91 -0.02 6.18 16 27 H 0.14 6.29 8.06 -2.91 -0.02 6.27 16 28 H 0.40 14.79 8.10 -92.71 -0.75 14.04 16 29 H 0.05 1.89 7.92 -2.39 -0.02 1.87 16 30 H 0.08 2.49 7.94 -2.39 -0.02 2.47 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.36 7.97 -2.39 -0.02 1.34 16 33 H 0.35 5.11 8.54 -89.69 -0.77 4.35 16 34 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.08 1.24 7.87 -2.39 -0.02 1.22 16 36 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.11 5.08 6.71 -2.91 -0.02 5.06 16 Total: -1.00 -65.50 311.36 -2.31 -67.81 By element: Atomic # 1 Polarization: 41.98 SS G_CDS: -0.42 Total: 41.55 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.87 Total: -14.16 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -7.10 Total: -121.79 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.68 Total: -12.74 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -65.50 -2.31 -67.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155543755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.842 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds