Wall clock time and date at job start Mon Mar 30 2020 02:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86806 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47197 * 273.40756 * 3 2 1 5 5 H 1.48498 * 109.46976 * 153.40480 * 3 2 1 6 6 H 1.48497 * 109.46898 * 33.40150 * 3 2 1 7 7 C 1.40024 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 163.46309 * 7 2 1 9 9 C 1.41551 * 119.99775 * 343.46557 * 7 2 1 10 10 C 1.41182 * 120.99412 * 336.02673 * 9 7 2 11 11 C 1.36563 * 119.14789 * 179.79247 * 10 9 7 12 12 N 1.32100 * 121.26533 * 0.49324 * 11 10 9 13 13 C 1.32530 * 122.21508 * 359.73978 * 12 11 10 14 14 N 1.39083 * 119.65624 * 179.97438 * 13 12 11 15 15 C 1.46499 * 120.00444 * 180.02562 * 14 13 12 16 16 H 1.09007 * 110.60165 * 328.04253 * 15 14 13 17 17 C 1.54876 * 110.67961 * 91.25596 * 15 14 13 18 18 N 1.48531 * 103.19829 * 155.67696 * 17 15 14 19 19 C 1.47775 * 105.74629 * 320.10463 * 18 17 15 20 20 H 1.09006 * 112.60628 * 263.24299 * 19 18 17 21 21 C 1.56565 * 109.04793 * 137.52663 * 19 18 17 22 22 C 1.54967 * 102.22201 * 225.39144 * 21 19 18 23 23 O 1.44336 * 103.47584 * 37.54186 * 22 21 19 24 24 C 1.43731 * 107.04230 * 319.59333 * 23 22 21 25 25 H 1.09000 * 111.65747 * 263.46682 * 24 23 22 26 26 C 1.38748 * 120.68928 * 0.02562 * 13 12 11 27 27 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.42738 * 0.02717 * 10 9 7 29 29 H 1.07996 * 119.36951 * 180.23293 * 11 10 9 30 30 H 0.97005 * 120.00068 * 0.02562 * 14 13 12 31 31 H 1.09002 * 110.67551 * 274.10519 * 17 15 14 32 32 H 1.08998 * 110.66999 * 37.24981 * 17 15 14 33 33 H 1.00898 * 111.00277 * 199.63693 * 18 17 15 34 34 H 1.08994 * 110.48763 * 107.36450 * 21 19 18 35 35 H 1.08998 * 111.37699 * 343.81444 * 21 19 18 36 36 H 1.09001 * 110.62055 * 279.03938 * 22 21 19 37 37 H 1.09003 * 110.61591 * 156.03796 * 22 21 19 38 38 H 1.07995 * 120.66656 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4169 2.0881 -1.3976 5 1 3.5731 1.4205 0.6268 6 1 1.4767 2.6308 0.7707 7 6 2.0077 -1.2126 -0.0005 8 1 3.0542 -1.2318 -0.2668 9 6 1.3438 -2.4133 0.3478 10 6 0.1862 -2.3960 1.1557 11 6 -0.4267 -3.5764 1.4652 12 7 0.0487 -4.7301 1.0314 13 6 1.1337 -4.8073 0.2744 14 7 1.5880 -6.0507 -0.1524 15 6 2.7869 -6.1450 -0.9890 16 1 2.8773 -5.2679 -1.6300 17 6 4.0524 -6.3198 -0.1135 18 7 5.0115 -6.9842 -1.0327 19 6 4.2175 -7.9674 -1.7986 20 1 4.2765 -8.9717 -1.3790 21 6 4.6539 -7.9171 -3.3014 22 6 3.2910 -7.9139 -4.0389 23 8 2.4541 -7.0944 -3.1955 24 6 2.7622 -7.4386 -1.8344 25 1 2.0577 -8.1679 -1.4346 26 6 1.8218 -3.6609 -0.0961 27 1 -0.4851 0.8400 0.0004 28 1 -0.2118 -1.4608 1.5212 29 1 -1.3146 -3.5670 2.0799 30 1 1.1109 -6.8555 0.1039 31 1 4.4352 -5.3510 0.2074 32 1 3.8405 -6.9551 0.7464 33 1 5.7503 -7.4389 -0.5175 34 1 5.2332 -8.8033 -3.5603 35 1 5.2165 -7.0099 -3.5216 36 1 2.8908 -8.9252 -4.1104 37 1 3.3914 -7.4687 -5.0288 38 1 2.7062 -3.7243 -0.7127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155638215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:01 Heat of formation + Delta-G solvation = 0.466943 kcal Electronic energy + Delta-G solvation = -21119.468372 eV Core-core repulsion = 17961.474508 eV Total energy + Delta-G solvation = -3157.993864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26691 -38.33406 -36.30037 -34.57795 -33.63208 -31.12661 -30.54600 -29.02810 -27.64090 -26.49542 -25.82374 -22.39334 -21.89667 -21.19961 -20.60526 -20.04194 -17.80307 -17.24683 -16.33696 -15.50895 -15.47533 -14.89702 -14.80327 -14.61711 -14.13538 -13.90479 -13.66746 -13.00795 -12.95456 -12.82596 -12.36567 -12.20341 -11.86733 -11.53108 -11.45659 -11.34197 -11.12384 -11.08501 -10.88533 -10.66263 -10.25536 -9.78904 -9.71281 -9.37455 -8.97622 -8.70038 -7.91222 -7.87485 -6.79690 -6.45107 -4.51064 2.83389 3.06655 3.08904 3.12349 3.38464 3.68660 3.77142 3.92189 4.29550 4.36908 4.71145 4.77866 4.83465 5.01346 5.16805 5.20223 5.26530 5.37371 5.61050 5.62714 5.68267 5.85470 5.96014 6.04268 6.08978 6.27118 6.54794 6.80644 6.90667 6.98220 7.00896 7.05730 7.17810 7.31405 7.59484 7.86828 8.07425 8.11957 8.47598 8.72837 8.88085 8.93878 9.80352 10.15771 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.004623 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.529369 B = 6055.867388 C = 6645.239948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.156 3.844 10 C -0.243 4.243 11 C 0.114 3.886 12 N -0.624 5.624 13 C 0.398 3.602 14 N -0.734 5.734 15 C 0.166 3.834 16 H 0.108 0.892 17 C 0.024 3.976 18 N -0.656 5.656 19 C 0.038 3.962 20 H 0.073 0.927 21 C -0.141 4.141 22 C 0.044 3.956 23 O -0.359 6.359 24 C 0.062 3.938 25 H 0.082 0.918 26 C -0.332 4.332 27 H 0.281 0.719 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.388 0.612 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.338 0.662 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 -12.165 -3.604 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.200 1.200 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.148 3.852 10 C -0.268 4.268 11 C -0.035 4.035 12 N -0.347 5.347 13 C 0.168 3.832 14 N -0.370 5.370 15 C 0.057 3.943 16 H 0.126 0.874 17 C -0.107 4.107 18 N -0.286 5.286 19 C -0.073 4.073 20 H 0.091 0.909 21 C -0.180 4.180 22 C -0.033 4.033 23 O -0.277 6.277 24 C 0.003 3.997 25 H 0.100 0.900 26 C -0.359 4.359 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.135 0.865 30 H 0.222 0.778 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.153 0.847 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.402 -11.993 -4.044 14.662 hybrid contribution 0.518 0.338 0.565 0.838 sum 7.920 -11.654 -3.479 14.514 Atomic orbital electron populations 1.69807 1.07696 1.29329 1.34145 1.25960 0.94720 1.01429 0.91928 0.86290 0.80733 0.80476 0.79169 1.19458 1.18346 1.19985 1.19582 0.97694 0.90797 1.40578 0.90254 1.17597 0.89877 0.91641 0.86121 1.21785 1.01399 0.98062 1.05539 1.21346 0.97284 0.87902 0.96942 1.66726 1.16357 1.29981 1.21644 1.17900 0.90096 0.84416 0.90818 1.44009 1.29464 1.05713 1.57792 1.21651 0.84091 0.97924 0.90609 0.87428 1.23638 0.92536 1.00250 0.94258 1.63123 1.10885 1.28088 1.26468 1.23841 0.92773 0.94944 0.95745 0.90910 1.23482 0.97863 1.03485 0.93133 1.23570 0.89122 0.95193 0.95450 1.89013 1.62208 1.61502 1.15017 1.23846 0.94586 0.96801 0.84495 0.90049 1.21163 1.07559 0.92165 1.14984 0.90764 0.85941 0.86471 0.77790 0.88814 0.93518 0.84699 0.90807 0.88917 0.92520 0.88824 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.33 10.91 55.55 0.61 -19.73 16 2 C 0.08 1.99 5.20 -17.34 -0.09 1.90 16 3 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.21 9.12 -37.65 -0.34 -12.56 16 8 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 9 C 0.16 4.27 5.60 -106.56 -0.60 3.67 16 10 C -0.24 -6.49 8.74 -39.07 -0.34 -6.84 16 11 C 0.11 2.86 11.10 -18.04 -0.20 2.66 16 12 N -0.62 -15.57 10.37 -12.82 -0.13 -15.70 16 13 C 0.40 9.52 7.65 -154.97 -1.19 8.33 16 14 N -0.73 -14.09 5.35 -52.23 -0.28 -14.37 16 15 C 0.17 2.77 2.84 -66.13 -0.19 2.58 16 16 H 0.11 2.13 6.22 -51.93 -0.32 1.80 16 17 C 0.02 0.34 7.22 -1.93 -0.01 0.33 16 18 N -0.66 -7.77 7.05 -100.77 -0.71 -8.48 16 19 C 0.04 0.42 4.41 -64.32 -0.28 0.13 16 20 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 21 C -0.14 -1.40 6.90 -23.77 -0.16 -1.56 16 22 C 0.04 0.47 7.71 38.20 0.29 0.76 16 23 O -0.36 -5.54 11.05 -35.23 -0.39 -5.93 16 24 C 0.06 0.86 4.08 -24.92 -0.10 0.76 16 25 H 0.08 1.05 7.79 -51.93 -0.40 0.65 16 26 C -0.33 -8.45 9.04 -38.43 -0.35 -8.80 16 27 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 28 H 0.12 3.31 6.19 -52.48 -0.32 2.99 16 29 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 30 H 0.39 6.86 8.54 -40.82 -0.35 6.51 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.34 3.20 8.92 -39.29 -0.35 2.85 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.03 8.03 -51.93 -0.42 0.62 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 2.41 6.18 -52.49 -0.32 2.08 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -30.02 310.21 -9.82 -39.84 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.00 Total: 14.75 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -3.56 Total: -8.63 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.52 Total: -58.28 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.39 Total: -5.93 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.02 -9.82 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155638215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.311 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds