Wall clock time and date at job start Mon Mar 30 2020 02:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86806 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47197 * 273.40756 * 3 2 1 5 5 H 1.48498 * 109.46976 * 153.40480 * 3 2 1 6 6 H 1.48497 * 109.46898 * 33.40150 * 3 2 1 7 7 C 1.40024 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 163.46309 * 7 2 1 9 9 C 1.41551 * 119.99775 * 343.46557 * 7 2 1 10 10 C 1.41182 * 120.99412 * 336.02673 * 9 7 2 11 11 C 1.36563 * 119.14789 * 179.79247 * 10 9 7 12 12 N 1.32100 * 121.26533 * 0.49324 * 11 10 9 13 13 C 1.32530 * 122.21508 * 359.73978 * 12 11 10 14 14 N 1.39083 * 119.65624 * 179.97438 * 13 12 11 15 15 C 1.46499 * 120.00444 * 180.02562 * 14 13 12 16 16 H 1.09007 * 110.60165 * 328.04253 * 15 14 13 17 17 C 1.54876 * 110.67961 * 91.25596 * 15 14 13 18 18 N 1.48531 * 103.19829 * 155.67696 * 17 15 14 19 19 C 1.47775 * 105.74629 * 320.10463 * 18 17 15 20 20 H 1.09006 * 112.60628 * 263.24299 * 19 18 17 21 21 C 1.56565 * 109.04793 * 137.52663 * 19 18 17 22 22 C 1.54967 * 102.22201 * 225.39144 * 21 19 18 23 23 O 1.44336 * 103.47584 * 37.54186 * 22 21 19 24 24 C 1.43731 * 107.04230 * 319.59333 * 23 22 21 25 25 H 1.09000 * 111.65747 * 263.46682 * 24 23 22 26 26 C 1.38748 * 120.68928 * 0.02562 * 13 12 11 27 27 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.42738 * 0.02717 * 10 9 7 29 29 H 1.07996 * 119.36951 * 180.23293 * 11 10 9 30 30 H 0.97005 * 120.00068 * 0.02562 * 14 13 12 31 31 H 1.09002 * 110.67551 * 274.10519 * 17 15 14 32 32 H 1.08998 * 110.66999 * 37.24981 * 17 15 14 33 33 H 1.00898 * 111.00277 * 199.63693 * 18 17 15 34 34 H 1.08994 * 110.48763 * 107.36450 * 21 19 18 35 35 H 1.08998 * 111.37699 * 343.81444 * 21 19 18 36 36 H 1.09001 * 110.62055 * 279.03938 * 22 21 19 37 37 H 1.09003 * 110.61591 * 156.03796 * 22 21 19 38 38 H 1.07995 * 120.66656 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4169 2.0881 -1.3976 5 1 3.5731 1.4205 0.6268 6 1 1.4767 2.6308 0.7707 7 6 2.0077 -1.2126 -0.0005 8 1 3.0542 -1.2318 -0.2668 9 6 1.3438 -2.4133 0.3478 10 6 0.1862 -2.3960 1.1557 11 6 -0.4267 -3.5764 1.4652 12 7 0.0487 -4.7301 1.0314 13 6 1.1337 -4.8073 0.2744 14 7 1.5880 -6.0507 -0.1524 15 6 2.7869 -6.1450 -0.9890 16 1 2.8773 -5.2679 -1.6300 17 6 4.0524 -6.3198 -0.1135 18 7 5.0115 -6.9842 -1.0327 19 6 4.2175 -7.9674 -1.7986 20 1 4.2765 -8.9717 -1.3790 21 6 4.6539 -7.9171 -3.3014 22 6 3.2910 -7.9139 -4.0389 23 8 2.4541 -7.0944 -3.1955 24 6 2.7622 -7.4386 -1.8344 25 1 2.0577 -8.1679 -1.4346 26 6 1.8218 -3.6609 -0.0961 27 1 -0.4851 0.8400 0.0004 28 1 -0.2118 -1.4608 1.5212 29 1 -1.3146 -3.5670 2.0799 30 1 1.1109 -6.8555 0.1039 31 1 4.4352 -5.3510 0.2074 32 1 3.8405 -6.9551 0.7464 33 1 5.7503 -7.4389 -0.5175 34 1 5.2332 -8.8033 -3.5603 35 1 5.2165 -7.0099 -3.5216 36 1 2.8908 -8.9252 -4.1104 37 1 3.3914 -7.4687 -5.0288 38 1 2.7062 -3.7243 -0.7127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155638215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:00 Heat of formation + Delta-G solvation = -21.475422 kcal Electronic energy + Delta-G solvation = -21120.419864 eV Core-core repulsion = 17961.474508 eV Total energy + Delta-G solvation = -3158.945356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36912 -40.17312 -37.54421 -36.23439 -35.30865 -32.60318 -32.14810 -30.47226 -28.88961 -27.95317 -27.74195 -23.70512 -23.26734 -22.90697 -21.95818 -21.26154 -19.60731 -18.41123 -17.92466 -17.01557 -16.78714 -16.50984 -16.08470 -15.82584 -15.70392 -15.43638 -14.86765 -14.67582 -14.59023 -14.31448 -14.09480 -13.40169 -13.27478 -13.08198 -12.87182 -12.74928 -12.46303 -12.36324 -12.00609 -11.97205 -11.83780 -11.72150 -11.25819 -10.86769 -10.60994 -9.93224 -9.86641 -9.64078 -8.70725 -8.28091 -6.55571 0.96821 1.16947 1.38701 1.52662 1.60315 2.19308 2.32990 2.71876 2.79997 3.29552 3.39010 3.65338 3.79488 3.85756 4.11570 4.14553 4.21785 4.24234 4.33185 4.36049 4.62351 4.73498 4.82495 4.85809 4.93192 4.95254 5.02342 5.04920 5.11791 5.23232 5.30760 5.58587 5.62001 5.89691 5.96429 6.11280 6.33761 6.38498 6.53482 6.86218 6.88294 7.01276 7.85179 8.27255 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.004623 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.529369 B = 6055.867388 C = 6645.239948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.261 1.261 7 C -0.489 4.489 8 H 0.077 0.923 9 C 0.128 3.872 10 C -0.268 4.268 11 C 0.116 3.884 12 N -0.632 5.632 13 C 0.400 3.600 14 N -0.721 5.721 15 C 0.157 3.843 16 H 0.069 0.931 17 C 0.036 3.964 18 N -0.660 5.660 19 C 0.044 3.956 20 H 0.107 0.893 21 C -0.134 4.134 22 C 0.036 3.964 23 O -0.398 6.398 24 C 0.063 3.937 25 H 0.095 0.905 26 C -0.352 4.352 27 H 0.292 0.708 28 H 0.113 0.887 29 H 0.146 0.854 30 H 0.398 0.602 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.355 0.645 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.195 -13.486 -3.900 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.185 1.185 7 C -0.519 4.519 8 H 0.095 0.905 9 C 0.120 3.880 10 C -0.293 4.293 11 C -0.034 4.034 12 N -0.356 5.356 13 C 0.168 3.832 14 N -0.357 5.357 15 C 0.050 3.950 16 H 0.087 0.913 17 C -0.095 4.095 18 N -0.291 5.291 19 C -0.067 4.067 20 H 0.125 0.875 21 C -0.172 4.172 22 C -0.039 4.039 23 O -0.318 6.318 24 C 0.004 3.996 25 H 0.112 0.888 26 C -0.379 4.379 27 H 0.103 0.897 28 H 0.131 0.869 29 H 0.164 0.836 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.173 0.827 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.560 -13.376 -4.360 16.468 hybrid contribution 0.139 0.662 0.582 0.892 sum 8.699 -12.714 -3.778 15.862 Atomic orbital electron populations 1.69845 1.09191 1.31010 1.33726 1.26871 0.95537 1.04723 0.90695 0.85125 0.79168 0.75424 0.79559 1.18620 1.18130 1.18529 1.19857 0.97907 0.92013 1.42162 0.90494 1.18004 0.90630 0.92695 0.86692 1.21754 1.02185 0.98361 1.06980 1.21770 0.97718 0.87458 0.96439 1.66890 1.16753 1.29747 1.22234 1.18132 0.89422 0.85785 0.89841 1.44031 1.30058 1.04394 1.57196 1.21754 0.84076 0.98360 0.90826 0.91278 1.23347 0.91758 0.99861 0.94556 1.63049 1.10869 1.29111 1.26112 1.23965 0.90361 0.95869 0.96465 0.87508 1.23455 0.97456 1.04263 0.92057 1.23848 0.89110 0.95803 0.95184 1.88974 1.63613 1.63094 1.16101 1.23896 0.97090 0.95031 0.83580 0.88784 1.21218 1.08188 0.92536 1.15940 0.89697 0.86911 0.83641 0.76610 0.91072 0.92327 0.82725 0.87449 0.90609 0.90203 0.88204 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.84 10.91 21.84 0.24 -42.60 16 2 C 0.04 1.99 5.20 85.29 0.44 2.43 16 3 Si 0.99 38.21 29.59 68.60 2.03 40.24 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 6 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 7 C -0.49 -27.22 9.12 23.52 0.21 -27.01 16 8 H 0.08 4.15 7.90 -2.91 -0.02 4.12 16 9 C 0.13 7.31 5.60 -21.12 -0.12 7.19 16 10 C -0.27 -14.79 8.74 22.60 0.20 -14.59 16 11 C 0.12 5.85 11.10 84.26 0.94 6.78 16 12 N -0.63 -31.78 10.37 -194.46 -2.02 -33.80 16 13 C 0.40 19.56 7.65 132.90 1.02 20.58 16 14 N -0.72 -27.83 5.35 -319.17 -1.71 -29.54 16 15 C 0.16 5.31 2.84 46.16 0.13 5.44 16 16 H 0.07 2.89 6.22 -2.38 -0.01 2.87 16 17 C 0.04 1.01 7.22 86.63 0.63 1.64 16 18 N -0.66 -14.44 7.05 -472.73 -3.33 -17.77 16 19 C 0.04 0.83 4.41 46.63 0.21 1.04 16 20 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 21 C -0.13 -2.27 6.90 32.51 0.22 -2.05 16 22 C 0.04 0.71 7.71 72.65 0.56 1.27 16 23 O -0.40 -12.05 11.05 -148.98 -1.65 -13.70 16 24 C 0.06 1.66 4.08 31.76 0.13 1.79 16 25 H 0.09 2.22 7.79 -2.39 -0.02 2.20 16 26 C -0.35 -18.75 9.04 23.01 0.21 -18.54 16 27 H 0.29 13.73 8.29 -92.71 -0.77 12.96 16 28 H 0.11 6.33 6.19 -2.91 -0.02 6.31 16 29 H 0.15 6.34 8.06 -2.91 -0.02 6.31 16 30 H 0.40 13.76 8.54 -92.70 -0.79 12.97 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.36 5.76 8.92 -89.70 -0.80 4.96 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.56 8.03 -2.39 -0.02 1.54 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 5.07 6.18 -2.91 -0.02 5.05 16 Total: -1.00 -67.44 310.21 -2.15 -69.59 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -0.49 Total: 41.60 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.77 Total: -14.04 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -6.82 Total: -123.70 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -1.65 Total: -13.70 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -67.44 -2.15 -69.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155638215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.115 kcal (2) G-P(sol) polarization free energy of solvation -67.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds