Wall clock time and date at job start Mon Mar 30 2020 02:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86798 * 119.99576 * 2 1 4 4 H 1.48495 * 109.47592 * 274.64231 * 3 2 1 5 5 H 1.48499 * 109.47277 * 34.64812 * 3 2 1 6 6 H 1.48504 * 109.46878 * 154.64048 * 3 2 1 7 7 C 1.40021 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00015 * 197.00913 * 7 2 1 9 9 C 1.41558 * 120.00103 * 16.99881 * 7 2 1 10 10 C 1.41187 * 120.99403 * 203.27841 * 9 7 2 11 11 C 1.36554 * 119.14602 * 180.02562 * 10 9 7 12 12 N 1.32101 * 121.26517 * 359.97438 * 11 10 9 13 13 C 1.32529 * 122.22192 * 0.02562 * 12 11 10 14 14 N 1.39077 * 119.65635 * 179.97438 * 13 12 11 15 15 C 1.46505 * 119.99680 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47106 * 179.72337 * 15 14 13 17 17 O 1.21284 * 120.00205 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99846 * 180.02562 * 16 15 14 19 19 C 1.47022 * 125.64951 * 359.69119 * 18 16 15 20 20 C 1.54309 * 107.27364 * 180.97040 * 19 18 16 21 21 C 1.55157 * 102.86731 * 22.52608 * 20 19 18 22 22 C 1.47424 * 125.64459 * 180.02562 * 18 16 15 23 23 C 1.38747 * 120.68325 * 0.25791 * 13 12 11 24 24 H 0.96997 * 120.00215 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.42384 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.36965 * 180.02562 * 11 10 9 27 27 H 0.96997 * 120.00486 * 359.72454 * 14 13 12 28 28 H 1.08996 * 109.47296 * 299.72663 * 15 14 13 29 29 H 1.09003 * 109.46810 * 59.72636 * 15 14 13 30 30 H 1.09003 * 109.88054 * 300.51477 * 19 18 16 31 31 H 1.08994 * 109.87905 * 61.68054 * 19 18 16 32 32 H 1.09000 * 110.92609 * 264.11239 * 20 19 18 33 33 H 1.08999 * 110.58989 * 140.78875 * 20 19 18 34 34 H 1.09000 * 111.00734 * 206.22735 * 21 20 19 35 35 H 1.09006 * 111.00120 * 82.37453 * 21 20 19 36 36 H 1.09002 * 110.36839 * 274.67045 * 22 18 16 37 37 H 1.09006 * 110.37034 * 36.88593 * 22 18 16 38 38 H 1.07997 * 120.66588 * 179.73998 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3908 2.1032 -1.3954 5 1 1.4914 2.6223 0.7960 6 1 3.5846 1.4139 0.5997 7 6 2.0077 -1.2126 -0.0005 8 1 3.0522 -1.2331 0.2730 9 6 1.3464 -2.4116 -0.3595 10 6 1.8274 -3.6656 0.0758 11 6 1.1603 -4.7985 -0.2932 12 7 0.0768 -4.7413 -1.0469 13 6 -0.4199 -3.5931 -1.4843 14 7 -1.5637 -3.5951 -2.2755 15 6 -2.1189 -2.3302 -2.7636 16 6 -3.3437 -2.6075 -3.5966 17 8 -3.7160 -3.7492 -3.7663 18 7 -4.0248 -1.5866 -4.1539 19 6 -3.6889 -0.1611 -4.0256 20 6 -4.7562 0.6334 -4.8071 21 6 -5.9554 -0.3502 -4.8515 22 6 -5.2341 -1.7142 -4.9874 23 6 0.1927 -2.3896 -1.1660 24 1 -0.4850 0.8400 0.0004 25 1 2.7117 -3.7280 0.6927 26 1 1.5248 -5.7596 0.0381 27 1 -1.9914 -4.4342 -2.5078 28 1 -2.3907 -1.7015 -1.9158 29 1 -1.3740 -1.8174 -3.3722 30 1 -3.7027 0.1299 -2.9752 31 1 -2.7035 0.0273 -4.4517 32 1 -4.4096 0.8644 -5.8144 33 1 -5.0242 1.5443 -4.2719 34 1 -6.5890 -0.1552 -5.7167 35 1 -6.5327 -0.3042 -3.9280 36 1 -4.9610 -1.8968 -6.0267 37 1 -5.8681 -2.5192 -4.6155 38 1 -0.2100 -1.4544 -1.5261 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156346645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:47 Heat of formation + Delta-G solvation = -2.719256 kcal Electronic energy + Delta-G solvation = -20802.011063 eV Core-core repulsion = 17643.879036 eV Total energy + Delta-G solvation = -3158.132028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.05974 -38.40543 -37.42910 -34.63170 -33.88893 -31.91214 -30.54087 -29.45909 -28.59225 -26.19178 -25.86558 -23.40559 -21.64530 -21.35025 -20.48957 -19.21430 -17.98084 -16.80817 -16.73767 -15.89638 -15.49421 -15.07180 -14.67623 -14.35529 -13.95147 -13.69676 -13.60577 -13.36089 -13.12814 -12.83953 -12.56261 -12.47789 -12.20522 -11.92579 -11.56426 -11.45651 -11.39906 -11.17434 -11.00180 -10.81762 -10.20142 -9.93934 -9.75214 -9.44562 -8.98680 -8.72833 -7.95027 -7.85707 -6.83808 -6.42814 -4.55235 2.67424 2.80457 2.84558 3.02156 3.05700 3.06546 3.33887 3.87306 4.12977 4.33743 4.36092 4.65989 4.71487 4.83816 5.05614 5.14489 5.45147 5.47542 5.60037 5.62431 5.66092 5.76258 5.79447 5.89116 5.92126 6.09239 6.20483 6.76897 6.79541 6.98236 7.05006 7.26579 7.40223 7.56138 7.88491 7.95777 8.13023 8.19386 8.46999 8.80321 8.84164 8.91438 9.79003 10.11434 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.005505 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.755954 B = 5085.192549 C = 6830.510378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.080 3.920 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.153 3.847 10 C -0.302 4.302 11 C 0.132 3.868 12 N -0.620 5.620 13 C 0.388 3.612 14 N -0.733 5.733 15 C 0.132 3.868 16 C 0.527 3.473 17 O -0.537 6.537 18 N -0.621 5.621 19 C 0.094 3.906 20 C -0.131 4.131 21 C -0.134 4.134 22 C 0.105 3.895 23 C -0.281 4.281 24 H 0.279 0.721 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.400 0.600 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 6.650 -8.531 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.098 0.902 9 C 0.144 3.856 10 C -0.327 4.327 11 C -0.020 4.020 12 N -0.343 5.343 13 C 0.160 3.840 14 N -0.373 5.373 15 C 0.002 3.998 16 C 0.317 3.683 17 O -0.414 6.414 18 N -0.357 5.357 19 C -0.029 4.029 20 C -0.169 4.169 21 C -0.172 4.172 22 C -0.017 4.017 23 C -0.308 4.308 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.137 0.863 27 H 0.237 0.763 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.023 5.519 -8.820 14.447 hybrid contribution 0.648 1.413 0.242 1.574 sum -9.374 6.933 -8.578 14.475 Atomic orbital electron populations 1.69831 1.07635 1.28954 1.34805 1.25925 0.94720 1.01278 0.91952 0.86307 0.80748 0.80572 0.79151 1.19310 1.20250 1.18487 1.19605 0.97895 0.90890 1.40381 0.90186 1.17582 0.89799 0.92024 0.86156 1.21496 1.05793 0.94024 1.11413 1.21246 0.90614 0.96695 0.93457 1.66713 1.17581 1.27942 1.22021 1.18043 0.86152 0.90315 0.89526 1.43743 1.29428 1.06460 1.57655 1.20746 0.92199 0.89128 0.97677 1.20582 0.84649 0.83884 0.79223 1.90676 1.68747 1.20876 1.61058 1.48438 1.28915 1.06690 1.51702 1.22141 0.99205 0.80073 1.01448 1.22634 0.94907 0.98315 1.01035 1.22794 0.97327 0.94069 1.03024 1.22201 0.86258 0.98236 0.95031 1.21491 1.03630 0.95769 1.09866 0.91027 0.88386 0.86296 0.76287 0.89127 0.89988 0.90556 0.90815 0.90455 0.89800 0.89830 0.90490 0.91532 0.90408 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.19 10.92 55.55 0.61 -18.59 16 2 C 0.08 1.93 5.20 -17.34 -0.09 1.84 16 3 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.90 9.12 -37.65 -0.34 -12.24 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 9 C 0.15 4.10 5.61 -106.55 -0.60 3.50 16 10 C -0.30 -7.59 9.85 -39.07 -0.38 -7.97 16 11 C 0.13 3.20 11.10 -18.04 -0.20 3.00 16 12 N -0.62 -15.85 10.37 -12.82 -0.13 -15.98 16 13 C 0.39 9.75 7.65 -154.98 -1.19 8.56 16 14 N -0.73 -16.00 5.70 -61.65 -0.35 -16.35 16 15 C 0.13 2.38 4.56 -5.19 -0.02 2.35 16 16 C 0.53 8.86 7.92 -10.99 -0.09 8.77 16 17 O -0.54 -10.67 15.92 5.55 0.09 -10.58 16 18 N -0.62 -8.07 3.33 -170.54 -0.57 -8.64 16 19 C 0.09 0.95 6.48 -3.07 -0.02 0.93 16 20 C -0.13 -0.94 6.95 -24.90 -0.17 -1.11 16 21 C -0.13 -0.99 7.08 -24.59 -0.17 -1.16 16 22 C 0.11 1.11 6.91 -2.54 -0.02 1.09 16 23 C -0.28 -7.31 8.02 -38.43 -0.31 -7.62 16 24 H 0.28 6.08 8.29 -40.82 -0.34 5.74 16 25 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 26 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 27 H 0.40 8.83 7.56 -40.82 -0.31 8.52 16 28 H 0.09 1.66 7.95 -51.93 -0.41 1.24 16 29 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 38 H 0.13 3.21 4.84 -52.49 -0.25 2.95 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -31.00 319.18 -9.34 -40.34 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.16 Total: 12.27 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -3.60 Total: -0.06 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.45 Total: -59.56 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.00 -9.34 -40.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156346645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.617 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds