Wall clock time and date at job start Mon Mar 30 2020 02:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86792 * 120.00115 * 2 1 4 4 H 1.48503 * 109.47166 * 269.72977 * 3 2 1 5 5 H 1.48503 * 109.47246 * 29.72759 * 3 2 1 6 6 H 1.48493 * 109.47084 * 149.72772 * 3 2 1 7 7 C 1.37875 * 119.99674 * 179.72952 * 2 1 3 8 8 C 1.51273 * 120.85143 * 0.27403 * 7 2 1 9 9 C 1.53228 * 108.53459 * 231.32486 * 8 7 2 10 10 C 1.52964 * 109.40592 * 305.37166 * 9 8 7 11 11 H 1.08998 * 109.41105 * 303.49270 * 10 9 8 12 12 N 1.46498 * 109.41444 * 183.70366 * 10 9 8 13 13 C 1.38262 * 119.99942 * 154.99810 * 12 10 9 14 14 N 1.32432 * 119.82446 * 354.28240 * 13 12 10 15 15 C 1.31856 * 121.76982 * 179.71058 * 14 13 12 16 16 C 1.38370 * 121.21850 * 0.56601 * 15 14 13 17 17 C 1.38325 * 119.51063 * 359.72399 * 16 15 14 18 18 C 1.39976 * 118.36941 * 359.97438 * 17 16 15 19 19 C 1.47431 * 120.61064 * 179.97438 * 18 17 16 20 20 N 1.34772 * 119.99562 * 5.75155 * 19 18 17 21 21 O 1.21605 * 119.99749 * 185.74483 * 19 18 17 22 22 C 1.52959 * 109.81669 * 63.59783 * 10 9 8 23 23 C 1.51269 * 120.84994 * 179.97438 * 7 2 1 24 24 H 0.96998 * 119.99496 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.62348 * 351.03605 * 8 7 2 26 26 H 1.08998 * 109.62708 * 111.41736 * 8 7 2 27 27 H 1.09005 * 109.48248 * 65.35229 * 9 8 7 28 28 H 1.09000 * 109.48353 * 185.37617 * 9 8 7 29 29 H 0.97000 * 120.00292 * 335.00289 * 12 10 9 30 30 H 1.08005 * 119.38171 * 180.26809 * 15 14 13 31 31 H 1.08000 * 120.24298 * 179.74619 * 16 15 14 32 32 H 1.08004 * 120.82075 * 179.97438 * 17 16 15 33 33 H 0.96999 * 120.00595 * 359.97438 * 20 19 18 34 34 H 0.97000 * 119.99392 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.48225 * 56.38325 * 22 10 9 36 36 H 1.09000 * 109.48273 * 176.41068 * 22 10 9 37 37 H 1.09001 * 109.62567 * 248.39126 * 23 7 2 38 38 H 1.08997 * 109.62357 * 8.95618 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5025 2.0430 -1.4001 5 1 1.4438 2.6543 0.6943 6 1 3.5438 1.4417 0.7058 7 6 2.0045 -1.1941 0.0056 8 6 1.2677 -2.5152 0.0057 9 6 1.8186 -3.3802 1.1442 10 6 3.3362 -3.5049 0.9991 11 1 3.5738 -3.9123 0.0164 12 7 3.8522 -4.4032 2.0349 13 6 5.0404 -5.0808 1.8331 14 7 5.6510 -5.0047 0.6604 15 6 6.7881 -5.6304 0.4279 16 6 7.3909 -6.4079 1.4010 17 6 6.7945 -6.5280 2.6433 18 6 5.5910 -5.8507 2.8716 19 6 4.9127 -5.9447 4.1773 20 7 5.5065 -6.5911 5.2000 21 8 3.8177 -5.4388 4.3313 22 6 3.9864 -2.1286 1.1497 23 6 3.5171 -1.2166 0.0052 24 1 -0.4849 0.8401 0.0004 25 1 0.2030 -2.3405 0.1608 26 1 1.4207 -3.0198 -0.9483 27 1 1.5819 -2.9152 2.1013 28 1 1.3662 -4.3709 1.0997 29 1 3.3603 -4.5227 2.8623 30 1 7.2551 -5.5382 -0.5416 31 1 8.3203 -6.9169 1.1922 32 1 7.2464 -7.1296 3.4182 33 1 6.3798 -6.9948 5.0771 34 1 5.0603 -6.6526 6.0591 35 1 3.6984 -1.6933 2.1066 36 1 5.0707 -2.2324 1.1091 37 1 3.8771 -1.6048 -0.9476 38 1 3.8982 -0.2072 0.1599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:22 Heat of formation + Delta-G solvation = -8.283544 kcal Electronic energy + Delta-G solvation = -21291.448935 eV Core-core repulsion = 18133.075621 eV Total energy + Delta-G solvation = -3158.373313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.64135 -38.70483 -37.34639 -34.62708 -33.76497 -32.06115 -31.86033 -29.81267 -29.29361 -26.73538 -24.65282 -22.97312 -21.55003 -21.38470 -20.90626 -19.24131 -18.18827 -17.35876 -17.06217 -16.06357 -15.72263 -15.08462 -15.01554 -14.41734 -14.30965 -14.22427 -13.77436 -13.11533 -12.98936 -12.67887 -12.55489 -12.29336 -12.04656 -11.53652 -10.99909 -10.86176 -10.62840 -10.26438 -10.13638 -10.04467 -9.91544 -9.87078 -9.74337 -9.36561 -9.19508 -8.86031 -8.57976 -8.41066 -7.38577 -6.04482 -3.94793 0.84657 1.57671 2.89112 3.31526 3.36275 3.39553 3.41082 3.71779 4.05920 4.43419 4.59157 4.66350 4.88176 5.13092 5.21420 5.35397 5.57705 5.80108 5.86831 6.00443 6.11769 6.34108 6.49209 6.56611 6.60869 6.73386 6.83303 6.97248 7.00896 7.10573 7.15703 7.20302 7.49902 7.62254 7.73005 7.75812 7.80703 7.91548 8.13901 8.44545 8.60738 9.02482 9.60288 11.05177 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025381 B = 0.004815 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.910919 B = 5813.366094 C = 6260.028560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.486 4.486 8 C 0.014 3.986 9 C -0.115 4.115 10 C 0.153 3.847 11 H 0.082 0.918 12 N -0.685 5.685 13 C 0.462 3.538 14 N -0.541 5.541 15 C 0.189 3.811 16 C -0.268 4.268 17 C 0.006 3.994 18 C -0.293 4.293 19 C 0.580 3.420 20 N -0.853 5.853 21 O -0.548 6.548 22 C -0.109 4.109 23 C -0.017 4.017 24 H 0.263 0.737 25 H 0.060 0.940 26 H 0.006 0.994 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.421 0.579 30 H 0.157 0.843 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.399 0.601 34 H 0.403 0.597 35 H 0.048 0.952 36 H 0.033 0.967 37 H 0.020 0.980 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.060 -14.031 6.780 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.505 4.505 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.049 3.951 11 H 0.100 0.900 12 N -0.319 5.319 13 C 0.220 3.780 14 N -0.258 5.258 15 C 0.025 3.975 16 C -0.292 4.292 17 C -0.021 4.021 18 C -0.305 4.305 19 C 0.368 3.632 20 N -0.416 5.416 21 O -0.427 6.427 22 C -0.148 4.148 23 C -0.055 4.055 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.270 0.730 30 H 0.174 0.826 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.228 0.772 34 H 0.234 0.766 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.038 0.962 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.584 -12.861 6.007 19.647 hybrid contribution 1.058 0.068 1.338 1.707 sum 14.643 -12.792 7.345 20.784 Atomic orbital electron populations 1.69844 1.06125 1.26832 1.50140 1.24847 0.94716 0.98545 0.94631 0.86675 0.79988 0.83318 0.78460 1.20410 1.21720 1.19014 1.20074 0.89453 0.91454 1.49505 1.19333 0.98690 0.92767 0.91577 1.21922 0.92518 0.98584 1.02284 1.21150 0.94444 0.88977 0.90496 0.89954 1.46285 1.19710 1.43106 1.22803 1.18462 0.86473 0.85711 0.87368 1.67508 1.11711 1.26251 1.20343 1.22728 0.88648 0.87592 0.98483 1.21600 1.04262 1.07993 0.95301 1.21322 0.91348 0.92785 0.96597 1.19923 1.01675 1.13232 0.95671 1.17981 0.84466 0.76787 0.83926 1.43609 1.23859 1.59549 1.14585 1.90516 1.21066 1.48123 1.82964 1.21963 0.96890 0.95296 1.00697 1.19865 0.96575 0.95356 0.93722 0.92666 0.92178 0.97538 0.92797 0.94709 0.73017 0.82629 0.85076 0.85415 0.77187 0.76592 0.93306 0.94819 0.96163 0.94772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 12.73 55.43 0.71 -25.47 16 2 C 0.07 2.10 5.46 -17.82 -0.10 2.00 16 3 Si 0.89 21.62 27.52 -169.99 -4.68 16.94 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.29 6.11 56.52 0.35 -5.94 16 7 C -0.49 -13.16 5.50 -98.92 -0.54 -13.71 16 8 C 0.01 0.37 5.97 -27.48 -0.16 0.20 16 9 C -0.11 -2.60 5.40 -26.63 -0.14 -2.74 16 10 C 0.15 3.24 2.40 -67.97 -0.16 3.08 16 11 H 0.08 1.82 7.44 -51.93 -0.39 1.43 16 12 N -0.68 -13.18 5.09 -53.78 -0.27 -13.45 16 13 C 0.46 7.95 7.46 -155.18 -1.16 6.80 16 14 N -0.54 -8.94 9.14 -12.20 -0.11 -9.05 16 15 C 0.19 2.31 11.16 -17.49 -0.20 2.12 16 16 C -0.27 -2.63 10.08 -39.50 -0.40 -3.03 16 17 C 0.01 0.06 9.63 -38.90 -0.37 -0.32 16 18 C -0.29 -4.07 5.91 -104.64 -0.62 -4.69 16 19 C 0.58 7.90 8.03 -12.52 -0.10 7.80 16 20 N -0.85 -7.03 8.83 30.43 0.27 -6.76 16 21 O -0.55 -9.58 14.51 5.27 0.08 -9.50 16 22 C -0.11 -2.44 5.53 -26.39 -0.15 -2.59 16 23 C -0.02 -0.42 5.62 -27.25 -0.15 -0.57 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.06 1.68 7.07 -51.93 -0.37 1.31 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.42 8.28 5.10 -40.92 -0.21 8.07 16 30 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 0.74 6.55 -52.48 -0.34 0.40 16 33 H 0.40 1.99 6.96 -40.82 -0.28 1.71 16 34 H 0.40 2.79 8.93 -40.82 -0.36 2.43 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.03 0.83 4.60 -51.93 -0.24 0.59 16 LS Contribution 306.24 15.07 4.61 4.61 Total: -1.00 -32.50 306.24 -8.42 -40.92 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.77 Total: 7.40 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -4.26 Total: -5.65 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.59 Total: -54.73 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.68 Total: 16.94 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.50 -8.42 -40.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.640 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds