Wall clock time and date at job start Mon Mar 30 2020 02:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86792 * 120.00115 * 2 1 4 4 H 1.48503 * 109.47166 * 269.72977 * 3 2 1 5 5 H 1.48503 * 109.47246 * 29.72759 * 3 2 1 6 6 H 1.48493 * 109.47084 * 149.72772 * 3 2 1 7 7 C 1.37875 * 119.99674 * 179.72952 * 2 1 3 8 8 C 1.51273 * 120.85143 * 0.27403 * 7 2 1 9 9 C 1.53228 * 108.53459 * 231.32486 * 8 7 2 10 10 C 1.52964 * 109.40592 * 305.37166 * 9 8 7 11 11 H 1.08998 * 109.41105 * 303.49270 * 10 9 8 12 12 N 1.46498 * 109.41444 * 183.70366 * 10 9 8 13 13 C 1.38262 * 119.99942 * 154.99810 * 12 10 9 14 14 N 1.32432 * 119.82446 * 354.28240 * 13 12 10 15 15 C 1.31856 * 121.76982 * 179.71058 * 14 13 12 16 16 C 1.38370 * 121.21850 * 0.56601 * 15 14 13 17 17 C 1.38325 * 119.51063 * 359.72399 * 16 15 14 18 18 C 1.39976 * 118.36941 * 359.97438 * 17 16 15 19 19 C 1.47431 * 120.61064 * 179.97438 * 18 17 16 20 20 N 1.34772 * 119.99562 * 5.75155 * 19 18 17 21 21 O 1.21605 * 119.99749 * 185.74483 * 19 18 17 22 22 C 1.52959 * 109.81669 * 63.59783 * 10 9 8 23 23 C 1.51269 * 120.84994 * 179.97438 * 7 2 1 24 24 H 0.96998 * 119.99496 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.62348 * 351.03605 * 8 7 2 26 26 H 1.08998 * 109.62708 * 111.41736 * 8 7 2 27 27 H 1.09005 * 109.48248 * 65.35229 * 9 8 7 28 28 H 1.09000 * 109.48353 * 185.37617 * 9 8 7 29 29 H 0.97000 * 120.00292 * 335.00289 * 12 10 9 30 30 H 1.08005 * 119.38171 * 180.26809 * 15 14 13 31 31 H 1.08000 * 120.24298 * 179.74619 * 16 15 14 32 32 H 1.08004 * 120.82075 * 179.97438 * 17 16 15 33 33 H 0.96999 * 120.00595 * 359.97438 * 20 19 18 34 34 H 0.97000 * 119.99392 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.48225 * 56.38325 * 22 10 9 36 36 H 1.09000 * 109.48273 * 176.41068 * 22 10 9 37 37 H 1.09001 * 109.62567 * 248.39126 * 23 7 2 38 38 H 1.08997 * 109.62357 * 8.95618 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5025 2.0430 -1.4001 5 1 1.4438 2.6543 0.6943 6 1 3.5438 1.4417 0.7058 7 6 2.0045 -1.1941 0.0056 8 6 1.2677 -2.5152 0.0057 9 6 1.8186 -3.3802 1.1442 10 6 3.3362 -3.5049 0.9991 11 1 3.5738 -3.9123 0.0164 12 7 3.8522 -4.4032 2.0349 13 6 5.0404 -5.0808 1.8331 14 7 5.6510 -5.0047 0.6604 15 6 6.7881 -5.6304 0.4279 16 6 7.3909 -6.4079 1.4010 17 6 6.7945 -6.5280 2.6433 18 6 5.5910 -5.8507 2.8716 19 6 4.9127 -5.9447 4.1773 20 7 5.5065 -6.5911 5.2000 21 8 3.8177 -5.4388 4.3313 22 6 3.9864 -2.1286 1.1497 23 6 3.5171 -1.2166 0.0052 24 1 -0.4849 0.8401 0.0004 25 1 0.2030 -2.3405 0.1608 26 1 1.4207 -3.0198 -0.9483 27 1 1.5819 -2.9152 2.1013 28 1 1.3662 -4.3709 1.0997 29 1 3.3603 -4.5227 2.8623 30 1 7.2551 -5.5382 -0.5416 31 1 8.3203 -6.9169 1.1922 32 1 7.2464 -7.1296 3.4182 33 1 6.3798 -6.9948 5.0771 34 1 5.0603 -6.6526 6.0591 35 1 3.6984 -1.6933 2.1066 36 1 5.0707 -2.2324 1.1091 37 1 3.8771 -1.6048 -0.9476 38 1 3.8982 -0.2072 0.1599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:21 Heat of formation + Delta-G solvation = -32.060185 kcal Electronic energy + Delta-G solvation = -21292.479967 eV Core-core repulsion = 18133.075621 eV Total energy + Delta-G solvation = -3159.404346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68657 -39.75958 -38.99053 -36.05999 -34.89182 -33.68166 -32.98678 -31.58894 -30.80278 -28.42646 -25.60967 -24.46070 -23.36295 -22.82996 -22.12486 -20.97463 -19.09624 -18.55041 -18.06850 -17.86141 -16.94047 -16.42704 -16.12236 -16.02004 -15.53954 -15.34918 -15.18354 -14.81768 -14.49524 -14.18788 -14.02031 -13.87142 -13.44575 -13.26214 -12.81111 -12.75152 -12.52721 -11.96567 -11.87874 -11.53788 -11.23194 -11.18873 -10.86854 -10.84764 -10.68177 -10.58974 -10.45096 -10.22324 -8.60763 -8.17465 -6.12067 -0.09921 0.62920 1.38203 1.40090 1.49066 1.89965 2.36497 2.40430 2.60965 3.06087 3.10449 3.67040 3.87370 4.00592 4.04636 4.19626 4.25574 4.44646 4.52973 4.67470 4.74780 4.88775 4.94948 5.02178 5.06071 5.15479 5.23299 5.26894 5.28673 5.54092 5.59122 5.72852 5.74779 5.78054 5.84971 6.29363 6.33830 6.44120 6.59527 6.92786 7.25095 7.45116 7.46085 8.93629 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025381 B = 0.004815 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.910919 B = 5813.366094 C = 6260.028560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.021 3.979 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.253 1.253 7 C -0.499 4.499 8 C 0.013 3.987 9 C -0.104 4.104 10 C 0.172 3.828 11 H 0.072 0.928 12 N -0.704 5.704 13 C 0.430 3.570 14 N -0.579 5.579 15 C 0.170 3.830 16 C -0.244 4.244 17 C 0.014 3.986 18 C -0.301 4.301 19 C 0.572 3.428 20 N -0.824 5.824 21 O -0.595 6.595 22 C -0.099 4.099 23 C -0.016 4.016 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.003 0.997 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.416 0.584 30 H 0.182 0.818 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.418 0.582 34 H 0.413 0.587 35 H 0.035 0.965 36 H 0.044 0.956 37 H 0.024 0.976 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.019 -15.829 7.595 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.178 1.178 7 C -0.518 4.518 8 C -0.025 4.025 9 C -0.142 4.142 10 C 0.067 3.933 11 H 0.090 0.910 12 N -0.342 5.342 13 C 0.191 3.809 14 N -0.297 5.297 15 C 0.009 3.991 16 C -0.266 4.266 17 C -0.012 4.012 18 C -0.313 4.313 19 C 0.361 3.639 20 N -0.388 5.388 21 O -0.477 6.477 22 C -0.138 4.138 23 C -0.054 4.054 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.022 0.978 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.264 0.736 30 H 0.199 0.801 31 H 0.193 0.807 32 H 0.195 0.805 33 H 0.251 0.749 34 H 0.245 0.755 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.662 -14.734 6.833 23.994 hybrid contribution -0.009 0.415 1.084 1.160 sum 17.653 -14.319 7.917 24.069 Atomic orbital electron populations 1.69982 1.07664 1.27504 1.52029 1.25643 0.95426 1.01912 0.94760 0.85769 0.79138 0.79340 0.78837 1.19550 1.21768 1.17776 1.20626 0.91152 0.91785 1.48241 1.19269 0.97098 0.93509 0.92631 1.21712 0.94279 0.98227 0.99987 1.20636 0.92755 0.88955 0.90943 0.91024 1.45958 1.21481 1.44658 1.22066 1.18766 0.86330 0.87002 0.88842 1.67435 1.13630 1.28020 1.20651 1.23350 0.87701 0.87539 1.00493 1.22115 1.04796 1.05607 0.94091 1.21892 0.89483 0.91715 0.98066 1.20123 1.02951 1.13149 0.95032 1.18139 0.84029 0.76917 0.84854 1.43351 1.24247 1.57510 1.13667 1.90493 1.23234 1.50346 1.83664 1.21815 0.97517 0.95544 0.98932 1.19855 0.94722 0.96090 0.94758 0.92768 0.95190 0.97816 0.94259 0.93606 0.73561 0.80081 0.80666 0.80455 0.74907 0.75510 0.94655 0.93719 0.95723 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 12.73 21.45 0.27 -56.45 16 2 C 0.02 1.18 5.46 84.65 0.46 1.64 16 3 Si 0.94 44.87 27.52 68.60 1.89 46.75 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.25 -11.45 6.11 99.48 0.61 -10.84 16 7 C -0.50 -27.74 5.50 -16.17 -0.09 -27.83 16 8 C 0.01 0.70 5.97 30.11 0.18 0.88 16 9 C -0.10 -4.90 5.40 30.66 0.17 -4.74 16 10 C 0.17 7.50 2.40 44.97 0.11 7.60 16 11 H 0.07 3.25 7.44 -2.39 -0.02 3.23 16 12 N -0.70 -27.71 5.09 -324.07 -1.65 -29.36 16 13 C 0.43 14.56 7.46 133.65 1.00 15.56 16 14 N -0.58 -18.52 9.14 -192.51 -1.76 -20.28 16 15 C 0.17 3.64 11.16 84.72 0.95 4.58 16 16 C -0.24 -3.51 10.08 22.32 0.23 -3.29 16 17 C 0.01 0.22 9.63 22.71 0.22 0.44 16 18 C -0.30 -7.71 5.91 -19.88 -0.12 -7.83 16 19 C 0.57 14.68 8.03 86.67 0.70 15.37 16 20 N -0.82 -10.93 8.83 -175.89 -1.55 -12.49 16 21 O -0.59 -20.97 14.51 -4.05 -0.06 -21.03 16 22 C -0.10 -4.46 5.53 30.81 0.17 -4.29 16 23 C -0.02 -0.79 5.62 30.26 0.17 -0.62 16 24 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.03 1.76 7.07 -2.39 -0.02 1.74 16 26 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.42 17.00 5.10 -94.27 -0.48 16.52 16 30 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.18 0.83 6.55 -2.91 -0.02 0.81 16 33 H 0.42 2.16 6.96 -92.71 -0.65 1.51 16 34 H 0.41 4.56 8.93 -92.71 -0.83 3.73 16 35 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.04 1.74 4.60 -2.39 -0.01 1.73 16 Total: -1.00 -75.21 306.24 0.34 -74.86 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.93 Total: 20.52 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.13 Total: -2.53 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.69 Total: -118.58 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.06 Total: -21.03 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.89 Total: 46.75 kcal Total: -75.21 0.34 -74.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.804 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds