Wall clock time and date at job start Mon Mar 30 2020 01:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00025 * 2 1 4 4 H 1.48504 * 109.46976 * 174.66335 * 3 2 1 5 5 H 1.48503 * 109.47296 * 294.66069 * 3 2 1 6 6 H 1.48498 * 109.47242 * 54.66212 * 3 2 1 7 7 C 1.37874 * 119.99667 * 180.02562 * 2 1 3 8 8 C 1.51269 * 120.85062 * 348.88098 * 7 2 1 9 9 C 1.53234 * 108.53255 * 231.32452 * 8 7 2 10 10 C 1.52958 * 109.41872 * 305.37533 * 9 8 7 11 11 H 1.08997 * 109.40206 * 303.48635 * 10 9 8 12 12 N 1.46495 * 109.42600 * 183.69450 * 10 9 8 13 13 C 1.39021 * 120.00371 * 84.64105 * 12 10 9 14 14 C 1.39115 * 119.64208 * 359.72616 * 13 12 10 15 15 C 1.39508 * 118.92926 * 179.75417 * 14 13 12 16 16 C 1.48163 * 120.88232 * 180.27943 * 15 14 13 17 17 N 1.34775 * 119.99979 * 180.22867 * 16 15 14 18 18 O 1.21515 * 120.00372 * 0.23785 * 16 15 14 19 19 C 1.40014 * 118.23329 * 0.50919 * 15 14 13 20 20 C 1.37941 * 119.17722 * 359.75138 * 19 15 14 21 21 N 1.31915 * 121.00201 * 359.97438 * 20 19 15 22 22 C 1.52961 * 109.81451 * 63.57749 * 10 9 8 23 23 C 1.51267 * 120.84955 * 168.85171 * 7 2 1 24 24 H 0.97005 * 119.99781 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.62949 * 351.03517 * 8 7 2 26 26 H 1.09004 * 109.62819 * 111.42101 * 8 7 2 27 27 H 1.08993 * 109.48346 * 65.35375 * 9 8 7 28 28 H 1.09009 * 109.48042 * 185.39256 * 9 8 7 29 29 H 0.97001 * 120.00050 * 264.63720 * 12 10 9 30 30 H 1.08003 * 120.54172 * 0.02562 * 14 13 12 31 31 H 0.97002 * 120.00421 * 0.02562 * 17 16 15 32 32 H 0.97007 * 119.99950 * 180.02562 * 17 16 15 33 33 H 1.08008 * 120.41099 * 179.72656 * 19 15 14 34 34 H 1.08006 * 119.49846 * 179.97438 * 20 19 15 35 35 H 1.09006 * 109.47988 * 176.43498 * 22 10 9 36 36 H 1.08997 * 109.48040 * 56.41060 * 22 10 9 37 37 H 1.09003 * 109.62690 * 8.96806 * 23 7 2 38 38 H 1.08997 * 109.63259 * 248.39023 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7040 1.3493 0.1302 5 1 1.9908 2.3385 -1.2724 6 1 1.7954 2.4513 1.1421 7 6 2.0045 -1.1941 -0.0005 8 6 1.2887 -2.5031 0.2493 9 6 2.0330 -3.2623 1.3528 10 6 3.5044 -3.4130 0.9628 11 1 3.5735 -3.9127 -0.0033 12 7 4.1970 -4.2145 1.9748 13 6 4.1659 -5.6025 1.9031 14 6 3.4701 -6.2227 0.8704 15 6 3.4530 -7.6164 0.8098 16 6 2.7307 -8.3216 -0.2746 17 7 2.7220 -9.6688 -0.3134 18 8 2.1463 -7.6855 -1.1293 19 6 4.1325 -8.3309 1.8039 20 6 4.7938 -7.6384 2.7969 21 7 4.7940 -6.3195 2.8208 22 6 4.1600 -2.0341 0.8700 23 6 3.4958 -1.2287 -0.2516 24 1 -0.4850 0.8401 0.0004 25 1 0.2650 -2.3057 0.5673 26 1 1.2802 -3.0961 -0.6652 27 1 1.9600 -2.7078 2.2883 28 1 1.5876 -4.2491 1.4791 29 1 4.6774 -3.7767 2.6949 30 1 2.9550 -5.6348 0.1250 31 1 3.1883 -10.1767 0.3689 32 1 2.2494 -10.1306 -1.0236 33 1 4.1385 -9.4109 1.7935 34 1 5.3192 -8.1844 3.5665 35 1 5.2222 -2.1505 0.6542 36 1 4.0369 -1.5086 1.8169 37 1 3.8901 -0.2125 -0.2555 38 1 3.6945 -1.7052 -1.2116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:56 Heat of formation + Delta-G solvation = -9.457322 kcal Electronic energy + Delta-G solvation = -21004.492040 eV Core-core repulsion = 17846.067827 eV Total energy + Delta-G solvation = -3158.424212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52741 -38.99257 -37.47981 -34.54195 -33.84254 -32.28560 -31.78792 -29.68713 -29.45542 -26.86366 -24.86648 -23.17122 -21.70400 -21.47999 -20.66769 -19.48239 -18.42513 -17.20442 -16.66765 -16.08399 -15.61271 -15.49937 -14.93096 -14.49709 -14.40861 -14.08423 -13.98560 -13.70267 -13.17070 -12.91722 -12.38491 -12.21289 -11.79075 -11.57426 -11.26294 -10.96346 -10.77569 -10.38068 -10.28447 -10.10466 -9.94641 -9.87908 -9.65850 -9.42300 -9.37842 -8.99266 -8.68319 -8.41600 -7.43729 -6.12482 -4.02091 0.84560 1.40356 2.93394 3.23579 3.25404 3.33678 3.35465 3.46593 4.03510 4.36663 4.61815 4.70486 5.01687 5.10566 5.16753 5.28666 5.54222 5.74227 5.79666 5.90335 6.03167 6.18770 6.41695 6.43368 6.55599 6.61638 6.70118 6.72925 6.86581 7.01629 7.08214 7.13429 7.33696 7.39703 7.62021 7.73928 7.81921 7.88262 8.09511 8.30521 8.36761 8.94967 9.52665 10.96957 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026102 B = 0.004530 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.439939 B = 6179.929790 C = 6876.642778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.491 4.491 8 C 0.013 3.987 9 C -0.120 4.120 10 C 0.157 3.843 11 H 0.074 0.926 12 N -0.710 5.710 13 C 0.412 3.588 14 C -0.176 4.176 15 C -0.054 4.054 16 C 0.562 3.438 17 N -0.850 5.850 18 O -0.525 6.525 19 C -0.226 4.226 20 C 0.147 3.853 21 N -0.541 5.541 22 C -0.112 4.112 23 C -0.021 4.021 24 H 0.264 0.736 25 H 0.055 0.945 26 H 0.008 0.992 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.401 0.599 30 H 0.150 0.850 31 H 0.401 0.599 32 H 0.405 0.595 33 H 0.129 0.871 34 H 0.156 0.844 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.875 -16.649 4.169 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.510 4.510 8 C -0.025 4.025 9 C -0.159 4.159 10 C 0.054 3.946 11 H 0.092 0.908 12 N -0.339 5.339 13 C 0.174 3.826 14 C -0.203 4.203 15 C -0.065 4.065 16 C 0.347 3.653 17 N -0.415 5.415 18 O -0.400 6.400 19 C -0.250 4.250 20 C -0.011 4.011 21 N -0.260 5.260 22 C -0.151 4.151 23 C -0.059 4.059 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.236 0.764 30 H 0.167 0.833 31 H 0.231 0.769 32 H 0.236 0.764 33 H 0.147 0.853 34 H 0.173 0.827 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.699 -15.376 4.180 18.154 hybrid contribution 0.146 0.072 -0.164 0.232 sum 8.845 -15.304 4.015 18.127 Atomic orbital electron populations 1.69911 1.06264 1.26886 1.49033 1.24853 0.94615 0.98585 0.94512 0.86757 0.81017 0.83756 0.77822 1.18102 1.20908 1.21238 1.20012 0.90860 0.92009 1.48091 1.19337 0.97343 0.93423 0.92419 1.22102 0.93730 0.98585 1.01490 1.21206 0.92736 0.91070 0.89573 0.90831 1.45230 1.56314 1.00840 1.31480 1.18390 0.89159 0.86252 0.88791 1.21712 1.03729 0.93861 1.00982 1.19918 0.97660 0.93818 0.95088 1.18322 0.79796 0.82416 0.84759 1.43700 1.57780 1.06882 1.33098 1.90868 1.43589 1.66394 1.39187 1.21752 1.04748 1.00278 0.98197 1.22249 0.94302 0.88687 0.95896 1.67080 1.23335 1.08433 1.27119 1.21857 0.96996 0.94338 1.01866 1.19922 0.96079 0.96483 0.93454 0.92629 0.92600 0.97400 0.92861 0.94782 0.76386 0.83253 0.76935 0.76424 0.85317 0.82685 0.94274 0.92445 0.93683 0.96166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.39 12.82 55.43 0.71 -24.68 16 2 C 0.08 2.09 5.44 -17.82 -0.10 2.00 16 3 Si 0.88 20.44 27.95 -169.99 -4.75 15.69 16 4 H -0.26 -5.63 5.58 56.52 0.32 -5.31 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.49 -12.70 5.48 -98.92 -0.54 -13.24 16 8 C 0.01 0.32 5.93 -27.48 -0.16 0.16 16 9 C -0.12 -2.54 5.39 -26.63 -0.14 -2.68 16 10 C 0.16 2.96 2.04 -67.98 -0.14 2.82 16 11 H 0.07 1.44 6.46 -51.93 -0.34 1.10 16 12 N -0.71 -11.70 5.24 -54.00 -0.28 -11.99 16 13 C 0.41 6.69 7.63 -155.08 -1.18 5.50 16 14 C -0.18 -2.90 8.34 -38.78 -0.32 -3.22 16 15 C -0.05 -0.74 5.91 -104.68 -0.62 -1.36 16 16 C 0.56 7.64 8.07 -12.18 -0.10 7.54 16 17 N -0.85 -6.89 8.83 30.60 0.27 -6.62 16 18 O -0.53 -9.56 17.28 5.35 0.09 -9.47 16 19 C -0.23 -2.35 9.61 -39.02 -0.37 -2.72 16 20 C 0.15 1.66 11.16 -17.62 -0.20 1.46 16 21 N -0.54 -7.97 10.37 -12.49 -0.13 -8.10 16 22 C -0.11 -2.16 5.40 -26.63 -0.14 -2.30 16 23 C -0.02 -0.48 5.65 -27.49 -0.16 -0.64 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.06 1.54 7.19 -51.93 -0.37 1.16 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.03 0.70 7.63 -51.92 -0.40 0.30 16 29 H 0.40 6.10 8.72 -40.82 -0.36 5.75 16 30 H 0.15 2.75 5.76 -52.48 -0.30 2.45 16 31 H 0.40 1.96 6.97 -40.82 -0.28 1.68 16 32 H 0.40 2.70 8.93 -40.82 -0.36 2.34 16 33 H 0.13 0.80 6.53 -52.48 -0.34 0.45 16 34 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.04 1.01 4.36 -51.93 -0.23 0.78 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -31.62 307.96 -8.37 -39.99 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.74 Total: 7.23 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -4.18 Total: -6.69 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.57 Total: -51.40 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.75 Total: 15.69 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.62 -8.37 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.531 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds