Wall clock time and date at job start Mon Mar 30 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00025 * 2 1 4 4 H 1.48504 * 109.46976 * 174.66335 * 3 2 1 5 5 H 1.48503 * 109.47296 * 294.66069 * 3 2 1 6 6 H 1.48498 * 109.47242 * 54.66212 * 3 2 1 7 7 C 1.37874 * 119.99667 * 180.02562 * 2 1 3 8 8 C 1.51269 * 120.85062 * 348.88098 * 7 2 1 9 9 C 1.53234 * 108.53255 * 231.32452 * 8 7 2 10 10 C 1.52958 * 109.41872 * 305.37533 * 9 8 7 11 11 H 1.08997 * 109.40206 * 303.48635 * 10 9 8 12 12 N 1.46495 * 109.42600 * 183.69450 * 10 9 8 13 13 C 1.39021 * 120.00371 * 84.64105 * 12 10 9 14 14 C 1.39115 * 119.64208 * 359.72616 * 13 12 10 15 15 C 1.39508 * 118.92926 * 179.75417 * 14 13 12 16 16 C 1.48163 * 120.88232 * 180.27943 * 15 14 13 17 17 N 1.34775 * 119.99979 * 180.22867 * 16 15 14 18 18 O 1.21515 * 120.00372 * 0.23785 * 16 15 14 19 19 C 1.40014 * 118.23329 * 0.50919 * 15 14 13 20 20 C 1.37941 * 119.17722 * 359.75138 * 19 15 14 21 21 N 1.31915 * 121.00201 * 359.97438 * 20 19 15 22 22 C 1.52961 * 109.81451 * 63.57749 * 10 9 8 23 23 C 1.51267 * 120.84955 * 168.85171 * 7 2 1 24 24 H 0.97005 * 119.99781 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.62949 * 351.03517 * 8 7 2 26 26 H 1.09004 * 109.62819 * 111.42101 * 8 7 2 27 27 H 1.08993 * 109.48346 * 65.35375 * 9 8 7 28 28 H 1.09009 * 109.48042 * 185.39256 * 9 8 7 29 29 H 0.97001 * 120.00050 * 264.63720 * 12 10 9 30 30 H 1.08003 * 120.54172 * 0.02562 * 14 13 12 31 31 H 0.97002 * 120.00421 * 0.02562 * 17 16 15 32 32 H 0.97007 * 119.99950 * 180.02562 * 17 16 15 33 33 H 1.08008 * 120.41099 * 179.72656 * 19 15 14 34 34 H 1.08006 * 119.49846 * 179.97438 * 20 19 15 35 35 H 1.09006 * 109.47988 * 176.43498 * 22 10 9 36 36 H 1.08997 * 109.48040 * 56.41060 * 22 10 9 37 37 H 1.09003 * 109.62690 * 8.96806 * 23 7 2 38 38 H 1.08997 * 109.63259 * 248.39023 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7040 1.3493 0.1302 5 1 1.9908 2.3385 -1.2724 6 1 1.7954 2.4513 1.1421 7 6 2.0045 -1.1941 -0.0005 8 6 1.2887 -2.5031 0.2493 9 6 2.0330 -3.2623 1.3528 10 6 3.5044 -3.4130 0.9628 11 1 3.5735 -3.9127 -0.0033 12 7 4.1970 -4.2145 1.9748 13 6 4.1659 -5.6025 1.9031 14 6 3.4701 -6.2227 0.8704 15 6 3.4530 -7.6164 0.8098 16 6 2.7307 -8.3216 -0.2746 17 7 2.7220 -9.6688 -0.3134 18 8 2.1463 -7.6855 -1.1293 19 6 4.1325 -8.3309 1.8039 20 6 4.7938 -7.6384 2.7969 21 7 4.7940 -6.3195 2.8208 22 6 4.1600 -2.0341 0.8700 23 6 3.4958 -1.2287 -0.2516 24 1 -0.4850 0.8401 0.0004 25 1 0.2650 -2.3057 0.5673 26 1 1.2802 -3.0961 -0.6652 27 1 1.9600 -2.7078 2.2883 28 1 1.5876 -4.2491 1.4791 29 1 4.6774 -3.7767 2.6949 30 1 2.9550 -5.6348 0.1250 31 1 3.1883 -10.1767 0.3689 32 1 2.2494 -10.1306 -1.0236 33 1 4.1385 -9.4109 1.7935 34 1 5.3192 -8.1844 3.5665 35 1 5.2222 -2.1505 0.6542 36 1 4.0369 -1.5086 1.8169 37 1 3.8901 -0.2125 -0.2555 38 1 3.6945 -1.7052 -1.2116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:55 Heat of formation + Delta-G solvation = -33.360225 kcal Electronic energy + Delta-G solvation = -21005.528547 eV Core-core repulsion = 17846.067827 eV Total energy + Delta-G solvation = -3159.460720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.61261 -40.14188 -39.00210 -36.01705 -34.95435 -33.68794 -33.18821 -31.50329 -30.76699 -28.49040 -25.93875 -24.54763 -23.46050 -23.01505 -21.80564 -21.12625 -19.44586 -18.33296 -18.06747 -17.52504 -16.82736 -16.58288 -16.39368 -16.03816 -15.70240 -15.31541 -15.19216 -14.85808 -14.71630 -14.57849 -14.15278 -14.02292 -13.33204 -12.94660 -12.91204 -12.72972 -12.57204 -11.91447 -11.86551 -11.52621 -11.38749 -11.21907 -10.95772 -10.81383 -10.68905 -10.56160 -10.47859 -10.41697 -8.64695 -8.17822 -6.11935 -0.22537 0.38422 1.40221 1.43696 1.52784 1.87412 2.14013 2.41397 2.42254 2.98139 3.09932 3.72218 3.77402 3.96833 4.00437 4.12374 4.19703 4.30830 4.42669 4.68625 4.74995 4.86223 4.91494 4.96448 5.01085 5.11389 5.15322 5.20060 5.27382 5.55470 5.57280 5.60930 5.76039 5.79328 5.81835 6.04328 6.32635 6.36307 6.69726 6.93251 7.18948 7.23032 7.45766 8.93623 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026102 B = 0.004530 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.439939 B = 6179.929790 C = 6876.642778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.019 3.981 3 Si 0.939 3.061 4 H -0.229 1.229 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.501 4.501 8 C 0.011 3.989 9 C -0.105 4.105 10 C 0.176 3.824 11 H 0.061 0.939 12 N -0.712 5.712 13 C 0.395 3.605 14 C -0.211 4.211 15 C -0.063 4.063 16 C 0.558 3.442 17 N -0.817 5.817 18 O -0.585 6.585 19 C -0.195 4.195 20 C 0.146 3.854 21 N -0.549 5.549 22 C -0.105 4.105 23 C -0.023 4.023 24 H 0.262 0.738 25 H 0.019 0.981 26 H -0.009 1.009 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.408 0.592 30 H 0.115 0.885 31 H 0.421 0.579 32 H 0.415 0.585 33 H 0.183 0.817 34 H 0.203 0.797 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.978 -19.137 5.792 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.179 4.179 3 Si 0.765 3.235 4 H -0.153 1.153 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.520 4.520 8 C -0.027 4.027 9 C -0.144 4.144 10 C 0.071 3.929 11 H 0.079 0.921 12 N -0.342 5.342 13 C 0.159 3.841 14 C -0.238 4.238 15 C -0.074 4.074 16 C 0.343 3.657 17 N -0.382 5.382 18 O -0.465 6.465 19 C -0.218 4.218 20 C -0.012 4.012 21 N -0.268 5.268 22 C -0.143 4.143 23 C -0.061 4.061 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.009 0.991 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.244 0.756 30 H 0.133 0.867 31 H 0.255 0.745 32 H 0.248 0.752 33 H 0.200 0.800 34 H 0.220 0.780 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 11.853 -17.956 5.835 22.293 hybrid contribution -0.838 0.529 -0.647 1.183 sum 11.015 -17.428 5.188 21.259 Atomic orbital electron populations 1.70068 1.08129 1.27551 1.51436 1.25728 0.95284 1.02285 0.94633 0.85791 0.81169 0.79212 0.77335 1.15266 1.21166 1.21491 1.20608 0.92936 0.91883 1.46597 1.19267 0.96209 0.94221 0.92995 1.21862 0.95616 0.97561 0.99397 1.20722 0.90982 0.91442 0.89777 0.92051 1.44802 1.56893 1.01147 1.31365 1.18369 0.90193 0.86052 0.89450 1.21550 1.05575 0.95309 1.01341 1.20113 0.98110 0.93068 0.96093 1.18457 0.79295 0.83812 0.84107 1.43437 1.56409 1.04957 1.33430 1.90849 1.46318 1.67965 1.41385 1.22298 1.01278 1.02712 0.95530 1.23145 0.93590 0.87654 0.96767 1.67138 1.22987 1.10195 1.26477 1.21723 0.98270 0.93705 1.00617 1.19921 0.93922 0.97579 0.94715 0.92856 0.96185 0.99110 0.93502 0.94936 0.75584 0.86693 0.74538 0.75190 0.80029 0.78025 0.91344 0.92070 0.92979 0.96216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 12.82 21.45 0.28 -55.94 16 2 C 0.02 1.05 5.44 84.65 0.46 1.51 16 3 Si 0.94 42.41 27.95 68.60 1.92 44.33 16 4 H -0.23 -9.25 5.58 99.48 0.56 -8.70 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.50 -26.72 5.48 -16.17 -0.09 -26.81 16 8 C 0.01 0.60 5.93 30.11 0.18 0.77 16 9 C -0.11 -4.67 5.39 30.66 0.17 -4.50 16 10 C 0.18 6.71 2.04 44.97 0.09 6.80 16 11 H 0.06 2.51 6.46 -2.39 -0.02 2.49 16 12 N -0.71 -23.16 5.24 -324.75 -1.70 -24.87 16 13 C 0.40 12.54 7.63 133.08 1.01 13.56 16 14 C -0.21 -7.06 8.34 22.79 0.19 -6.87 16 15 C -0.06 -1.62 5.91 -19.90 -0.12 -1.74 16 16 C 0.56 14.61 8.07 86.88 0.70 15.31 16 17 N -0.82 -10.73 8.83 -175.39 -1.55 -12.28 16 18 O -0.59 -22.10 17.28 -3.76 -0.07 -22.17 16 19 C -0.20 -3.15 9.61 22.63 0.22 -2.93 16 20 C 0.15 2.62 11.16 84.61 0.94 3.57 16 21 N -0.55 -14.71 10.37 -193.42 -2.00 -16.71 16 22 C -0.10 -3.92 5.40 30.66 0.17 -3.75 16 23 C -0.02 -1.05 5.65 30.11 0.17 -0.88 16 24 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 25 H 0.02 1.17 7.19 -2.39 -0.02 1.15 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.03 1.41 7.63 -2.38 -0.02 1.40 16 29 H 0.41 11.92 8.72 -92.71 -0.81 11.11 16 30 H 0.12 4.60 5.76 -2.91 -0.02 4.58 16 31 H 0.42 2.01 6.97 -92.71 -0.65 1.36 16 32 H 0.42 4.43 8.93 -92.70 -0.83 3.60 16 33 H 0.18 0.93 6.53 -2.91 -0.02 0.91 16 34 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 2.23 4.36 -2.39 -0.01 2.22 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -74.98 307.96 -0.34 -75.32 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -1.30 Total: 18.27 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 4.09 Total: -5.96 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -4.98 Total: -109.79 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.07 Total: -22.17 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.92 Total: 44.33 kcal Total: -74.98 -0.34 -75.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.956 kcal (2) G-P(sol) polarization free energy of solvation -74.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds